mRNA_H-elongata_contig73196.14997.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig73196.14997.1
Unique NamemRNA_H-elongata_contig73196.14997.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig73196.14997.1 vs. uniprot
Match: A0A6H5JLN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN2_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 2.170e-18
Identity = 61/154 (39.61%), Postives = 81/154 (52.60%), Query Frame = 1 
Query:   46 MDAQADEFCLVDPLVSMHGDESQEHIISQHVDGIVFAPPLSNAPGTPVPRLAGXXXP----------NANGENGAITVPSVLADDELWGPPAGARRPYEARGTAAAA---------AGAAAARTVSPPWGRTDSFGGRGAGSVGAFGGGSLASD 450
            M  QADEFCLV+PL ++  +  Q     +  + +VFAP  + AP TP P LAG              ++N  N +  V SVLADDELWGPPAGARRP++ARG                 A+ R +SPPW     +GG  +G  G   GG+ A++
Sbjct:    1 MSGQADEFCLVEPLAAVGINPGQSPGQPRGAECVVFAPAPTAAPNTPAPLLAGTSTNANSCLNGNGGSSNSSNSSGVVHSVLADDELWGPPAGARRPFQARGXXXXXXXXXXXXXXGAVASRRAISPPWTGNIDYGGGCSGGAGRVDGGASAAE 154
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73196.14997.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JLN2_9PHAE2.170e-1839.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73196contigH-elongata_contig73196:729..2855 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size556
Cds size510
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73196.14997.1prot_H-elongata_contig73196.14997.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig73196 774..2855 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931133.8073125-UTR-H-elongata_contig73196:728..7731622931133.8073125-UTR-H-elongata_contig73196:728..773Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73196 729..773 +
1691679712.1196613-UTR-H-elongata_contig73196:728..7731691679712.1196613-UTR-H-elongata_contig73196:728..773Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73196 729..773 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931133.823779-CDS-H-elongata_contig73196:773..8821622931133.823779-CDS-H-elongata_contig73196:773..882Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73196 774..882 +
1691679712.1300232-CDS-H-elongata_contig73196:773..8821691679712.1300232-CDS-H-elongata_contig73196:773..882Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73196 774..882 +
1622931133.8391037-CDS-H-elongata_contig73196:2454..28551622931133.8391037-CDS-H-elongata_contig73196:2454..2855Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73196 2455..2855 +
1691679712.1437442-CDS-H-elongata_contig73196:2454..28551691679712.1437442-CDS-H-elongata_contig73196:2454..2855Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73196 2455..2855 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig73196.14997.1

>prot_H-elongata_contig73196.14997.1 ID=prot_H-elongata_contig73196.14997.1|Name=mRNA_H-elongata_contig73196.14997.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=170bp
MDAQADEFCLVDPLVSMHGDESQEHIISQHVDGIVFAPPLSNAPGTPVPR
LAGTPIPNANGENGAITVPSVLADDELWGPPAGARRPYEARGTAAAAAGA
AAARTVSPPWGRTDSFGGRGAGSVGAFGGGSLASDDDEDEEGEEELGSRS
PGSADRSVNSPRPPGSRAEE
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mRNA from alignment at H-elongata_contig73196:729..2855+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig73196.14997.1 ID=mRNA_H-elongata_contig73196.14997.1|Name=mRNA_H-elongata_contig73196.14997.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2127bp|location=Sequence derived from alignment at H-elongata_contig73196:729..2855+ (Himanthalia elongata Himel1 dioecious)
CACCACAGTACCTCGTAATCACAGATAAAGCTTCAGTAGAGTGCCATGGA
CGCGCAAGCGGACGAGTTCTGCCTCGTCGACCCGCTGGTTTCGATGCACG
GTGATGAATCGCAGGAGCACATAATATCTCAGCACGTCGATGGGATCGTA
TTCGGTGAGTGAGTAGGGGGGCAAAGAAGTCTTCCCAATAATAACATTAC
TGTACAACAAAGTCTATCTGCTTCTCCTTTTTCCAAATATCTCGGTTTGA
ATTGGAAACAGCTCGAGGATTTCTCTCGTCCAGACTTATTCTCAGCAGGG
CTGGTGGGAATTGTTCCAGAAGCTCGTTCGATCTTCGAACGTATTTTGAG
CGGGACGGGGGTCAAGTGACATGCTGGTTGTTTCGCACGGTGCTTGTTTG
ATTTGCCCGCCACCTTCTTACCGTGAGAGGCAGCATGTGTGTGTGTGTGT
GTGTGTTTGTGTATTTATTAACATAACCGCGCAATCCGGCCCTGTCGTCC
TACTTTAGTGTGTTTGTGTATTTATTAAATTGCCCATAACCGCGCAATCC
GGCCCTGTCGTCCTAGTCCTTCTATGCCACTCGTATTGATCCTCCTAGGG
GGGGGGATCAATGTTACTTATTCCGAAAACCGTGATCGTGTGTGTGTGTG
TGTTTGTGTGTGTTTCTGCAATCGTGGGTTCTTTACATACCAATAACCAA
TCTGACCCCAACCATTTCCGATTCAATAATAACTATTAATATTAATATAC
TAAACTGATTGAGAGTCCCTTTGATTGCACTCTTGTCATCAGTCACCCTT
TGAGGTGTTTCGAGCTCTCGTCCTCCTACGTTTTTCTACTGCAAACCCTG
ATCCGTGCGGTTGGAAAATGTCTCCTAGCCTTTGGGACACCGAAAGCGAC
GAGATGAGGACATAAAGCCCCATGAGTGTTCCCCGGCTTCCTCGTAAGGA
TCCACAGACCGCACGCGACGCGAACCCGGACTTGAAAATAATTCGGCACC
TCCCCCCCCCCCATCCCCTGAACCTCAAAGTCTGGTAGTCATCCGCGCCA
TCGTTTTTACAGAAACAGCTGCTGCTCCTTCGTACAGGCCTCAATAAACA
TGCTACGTACAAAACTCCCGCTTCAACGGCTCTTGTTGTTGCCACAGTTC
TCATTTTCCTACTGAAGTCATTGCCCTGCATTTGTACCACAAATAGTGAG
ATAAACCCCGTTCAAGTTCAACCCTCCGCGGGGAGGTACATGAACTCCAG
TTCCCCCGCTACCTAACCCCCCACGCGCCGTTTGTTGAGGTGGTAACTTG
CAACAGTAGCGTGACACCAATCTTGAATTCGGATCTCGGGGATAGGGGAT
AGGGGTCGGTGGTGGTGGTGGCAAGGGGAGGAAAGGGAAAAGAGACTGTT
GTAGTCGAAAGCGTGAAGACGCGCGAAGTTCAACCATTGATTGACTAAGT
CTGGTGCAGGAGTGGTGCTGAACCCGCATGTCGATTAGACAACGTTGGCG
TTAATCAAGGTAAGGTGGGTAGATCGATCTCTCAGGGTCACAGACGGTGT
GAGTAACGTTACTCTATTTGGAAAGGATCACCTGGTACTTTGAATGGCTA
CATCCGCAGAACATGAAAAAAGAACTAAAAGAAGAAAATTGCGTACCTCT
CTACCCGCACTCGCGCACTCGCGCCCTTCTCCCATCCCCCACACTGCCAA
CGCCTCCTTATTTTTTCCGGAGCCAGCACCCCCTCTTTCGAACGCCCCTG
GTACGCCCGTACCACGACTCGCGGGCACACCAATCCCCAACGCCAATGGT
GAGAACGGCGCAATCACGGTTCCTTCGGTGCTAGCCGACGATGAGCTCTG
GGGGCCGCCAGCAGGAGCCAGAAGGCCCTACGAAGCGCGGGGCACGGCCG
CAGCGGCCGCGGGAGCTGCAGCAGCGAGGACCGTGTCGCCCCCTTGGGGA
AGAACAGACAGCTTCGGTGGCCGGGGGGCTGGCAGCGTGGGGGCCTTCGG
TGGAGGTAGTCTGGCCTCGGACGACGACGAGGATGAGGAAGGGGAGGAGG
AGTTGGGGTCGCGGTCACCAGGATCGGCGGATAGATCGGTGAACTCGCCC
AGACCGCCCGGGAGCAGGGCAGAAGAG
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Coding sequence (CDS) from alignment at H-elongata_contig73196:729..2855+

>mRNA_H-elongata_contig73196.14997.1 ID=mRNA_H-elongata_contig73196.14997.1|Name=mRNA_H-elongata_contig73196.14997.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1020bp|location=Sequence derived from alignment at H-elongata_contig73196:729..2855+ (Himanthalia elongata Himel1 dioecious)
ATGGACGCGCAAGCGGACGAGTTCTGCCTCGTCGACCCGCTGGTTTCGAT
GCACGGTGATGAATCGCAGGAGCACATAATATCTCAGCACGTCGATGGGA
TCGTATTCGATGGACGCGCAAGCGGACGAGTTCTGCCTCGTCGACCCGCT
GGTTTCGATGCACGGTGATGAATCGCAGGAGCACATAATATCTCAGCACG
TCGATGGGATCGTATTCGCACCCCCTCTTTCGAACGCCCCTGGTACGCCC
GTACCACGACTCGCGGGCACACCAATCCCCAACGCCAATGGTGAGAACGG
CGCAATCACGGTTCCTTCGGTGCTAGCCGACGATGAGCTCTGGGGGCCGC
CAGCAGGAGCCAGAAGGCCCTACGAAGCGCGGGGCACGGCCGCAGCGGCC
GCGGGAGCTGCAGCAGCGAGGACCGTGTCGCCCCCTTGGGGAAGAACAGA
CAGCTTCGGTGGCCGGGGGGCTGGCAGCGTGGGGGCCTTCGGTGGAGGTA
GTCTGGCCTCGGACGACGACGAGGATGAGGAAGGGGAGGAGGAGTTGGGG
TCGCGGTCACCAGGATCGGCGGATAGATCGGTGAACTCGCCCAGACCGCC
CGGGAGCAGGGCAGAAGAGCACCCCCTCTTTCGAACGCCCCTGGTACGCC
CGTACCACGACTCGCGGGCACACCAATCCCCAACGCCAATGGTGAGAACG
GCGCAATCACGGTTCCTTCGGTGCTAGCCGACGATGAGCTCTGGGGGCCG
CCAGCAGGAGCCAGAAGGCCCTACGAAGCGCGGGGCACGGCCGCAGCGGC
CGCGGGAGCTGCAGCAGCGAGGACCGTGTCGCCCCCTTGGGGAAGAACAG
ACAGCTTCGGTGGCCGGGGGGCTGGCAGCGTGGGGGCCTTCGGTGGAGGT
AGTCTGGCCTCGGACGACGACGAGGATGAGGAAGGGGAGGAGGAGTTGGG
GTCGCGGTCACCAGGATCGGCGGATAGATCGGTGAACTCGCCCAGACCGC
CCGGGAGCAGGGCAGAAGAG
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