mRNA_H-elongata_contig7317.14995.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7317.14995.1
Unique NamemRNA_H-elongata_contig7317.14995.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig7317.14995.1 vs. uniprot
Match: D7FWP4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWP4_ECTSI)

HSP 1 Score: 206 bits (525), Expect = 7.680e-67
Identity = 101/105 (96.19%), Postives = 103/105 (98.10%), Query Frame = 1
Query:   28 QMVNVPKERRTYCKAKRCNKHTVHKVTQYKAGKASNFAQGKRRYDHKQRGFGGQTKPIFHKKAKTTKKVTLRLECKECKAKKQLVIARCKHFELGEKKQATGHQY 342
            +MVNVPKERRTYCK KRCNKHTVHKVTQYK+GKASNFAQGKRRYDHKQRGFGGQTKPIFHKKAKTTKKVTLRLECK CKAKKQLVIARCKHFELGEKKQATGHQY
Sbjct:   34 EMVNVPKERRTYCKDKRCNKHTVHKVTQYKSGKASNFAQGKRRYDHKQRGFGGQTKPIFHKKAKTTKKVTLRLECKLCKAKKQLVIARCKHFELGEKKQATGHQY 138          
BLAST of mRNA_H-elongata_contig7317.14995.1 vs. uniprot
Match: A0A835YP36_9STRA (Zinc-binding ribosomal protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP36_9STRA)

HSP 1 Score: 193 bits (490), Expect = 5.560e-62
Identity = 93/104 (89.42%), Postives = 100/104 (96.15%), Query Frame = 1
Query:   31 MVNVPKERRTYCKAKRCNKHTVHKVTQYKAGKASNFAQGKRRYDHKQRGFGGQTKPIFHKKAKTTKKVTLRLECKECKAKKQLVIARCKHFELGEKKQATGHQY 342
            MVNVPKERRTYCK+K+C KHTVHKV+QYK+GKASNFAQGKRRYD KQ+G+GGQTKPIFHKKAKTTKKVTLRLECKECKAKKQLVI RCKHFELGEKK+ATGH Y
Sbjct:    1 MVNVPKERRTYCKSKKCGKHTVHKVSQYKSGKASNFAQGKRRYDSKQKGYGGQTKPIFHKKAKTTKKVTLRLECKECKAKKQLVIKRCKHFELGEKKKATGHVY 104          
BLAST of mRNA_H-elongata_contig7317.14995.1 vs. uniprot
Match: A0A7S2UXA0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXA0_9STRA)

HSP 1 Score: 191 bits (486), Expect = 2.270e-61
Identity = 92/104 (88.46%), Postives = 98/104 (94.23%), Query Frame = 1
Query:   31 MVNVPKERRTYCKAKRCNKHTVHKVTQYKAGKASNFAQGKRRYDHKQRGFGGQTKPIFHKKAKTTKKVTLRLECKECKAKKQLVIARCKHFELGEKKQATGHQY 342
            MVNVPKERRTYCKAK CNKHT+HKVTQYKAGKASNFAQGKRRYDHKQ+G+GGQTKPIFHKKAKTTKK+ LRLECKECK KKQLVI R KHFELGEKK++TG QY
Sbjct:    1 MVNVPKERRTYCKAKNCNKHTIHKVTQYKAGKASNFAQGKRRYDHKQKGYGGQTKPIFHKKAKTTKKIVLRLECKECKTKKQLVIKRTKHFELGEKKKSTGPQY 104          
BLAST of mRNA_H-elongata_contig7317.14995.1 vs. uniprot
Match: F0YGF9_AURAN (RL44_PICJA 60S ribosomal protein L44 n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0YGF9_AURAN)

HSP 1 Score: 191 bits (484), Expect = 4.580e-61
Identity = 92/104 (88.46%), Postives = 96/104 (92.31%), Query Frame = 1
Query:   31 MVNVPKERRTYCKAKRCNKHTVHKVTQYKAGKASNFAQGKRRYDHKQRGFGGQTKPIFHKKAKTTKKVTLRLECKECKAKKQLVIARCKHFELGEKKQATGHQY 342
            MVNVPKER+TYCKAK+C KHT HKVTQYKAGKASNFAQGKRRYD KQ GFGGQTKP+FHKKAKTTKKVTLRLECKECKAKKQL I RCKHFELGEKK+ TGH Y
Sbjct:    1 MVNVPKERKTYCKAKKCRKHTTHKVTQYKAGKASNFAQGKRRYDMKQMGFGGQTKPVFHKKAKTTKKVTLRLECKECKAKKQLTIKRCKHFELGEKKKTTGHTY 104          
BLAST of mRNA_H-elongata_contig7317.14995.1 vs. uniprot
Match: W7TXG3_9STRA (60s ribosomal protein l44 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TXG3_9STRA)

HSP 1 Score: 182 bits (463), Expect = 7.290e-58
Identity = 88/104 (84.62%), Postives = 96/104 (92.31%), Query Frame = 1
Query:   31 MVNVPKERRTYCKAKRCNKHTVHKVTQYKAGKASNFAQGKRRYDHKQRGFGGQTKPIFHKKAKTTKKVTLRLECKECKAKKQLVIARCKHFELGEKKQATGHQY 342
            MV +PKER+T+CK K+C KHTVHKVTQYKAGKASN+AQGKRRYD KQ+G+GGQTKPI HKKAKTTKKVTLRLECKECK KKQLVI R KHFELGEKK+ATGHQY
Sbjct:    1 MVCIPKERKTFCKGKKCKKHTVHKVTQYKAGKASNYAQGKRRYDRKQQGYGGQTKPILHKKAKTTKKVTLRLECKECKTKKQLVIKRTKHFELGEKKKATGHQY 104          
BLAST of mRNA_H-elongata_contig7317.14995.1 vs. uniprot
Match: A0A7S3NIT2_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NIT2_9STRA)

HSP 1 Score: 182 bits (462), Expect = 1.000e-57
Identity = 89/100 (89.00%), Postives = 94/100 (94.00%), Query Frame = 1
Query:   31 MVNVPKERRTYCKAKRCNKHTVHKVTQYKAGKASNFAQGKRRYDHKQRGFGGQTKPIFHKKAKTTKKVTLRLECKECKAKKQLVIARCKHFELGEKKQAT 330
            MVNVPKERRTYCK K+C KHTVHKVTQYKAGKASNFAQGKRRYD KQ+G+GGQTKPIFHKKAKTTKKV LRLECKECKAKKQL I RCKHFELGEKK++T
Sbjct:    1 MVNVPKERRTYCKGKKCKKHTVHKVTQYKAGKASNFAQGKRRYDAKQQGYGGQTKPIFHKKAKTTKKVVLRLECKECKAKKQLCIKRCKHFELGEKKKST 100          
BLAST of mRNA_H-elongata_contig7317.14995.1 vs. uniprot
Match: I6ZGD0_9STRA (Ribosomal protein L44 n=1 Tax=Aurantiochytrium sp. KRS101 TaxID=797128 RepID=I6ZGD0_9STRA)

HSP 1 Score: 181 bits (459), Expect = 2.970e-57
Identity = 87/104 (83.65%), Postives = 95/104 (91.35%), Query Frame = 1
Query:   31 MVNVPKERRTYCKAKRCNKHTVHKVTQYKAGKASNFAQGKRRYDHKQRGFGGQTKPIFHKKAKTTKKVTLRLECKECKAKKQLVIARCKHFELGEKKQATGHQY 342
            MVNVPKERRT+CK K+C KHTVHKVTQYKAGKASNFAQGKRRYD KQ+G+GGQTKPIFHKKAKTTKKVTLRLECKECK K Q+ + RCK FELG+KK+A GHQY
Sbjct:    1 MVNVPKERRTFCKGKQCRKHTVHKVTQYKAGKASNFAQGKRRYDRKQKGYGGQTKPIFHKKAKTTKKVTLRLECKECKTKCQIGLKRCKTFELGQKKEAAGHQY 104          
BLAST of mRNA_H-elongata_contig7317.14995.1 vs. uniprot
Match: A0A485LSL1_9STRA (Aste57867_25253 protein n=7 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485LSL1_9STRA)

HSP 1 Score: 180 bits (457), Expect = 6.000e-57
Identity = 85/104 (81.73%), Postives = 96/104 (92.31%), Query Frame = 1
Query:   31 MVNVPKERRTYCKAKRCNKHTVHKVTQYKAGKASNFAQGKRRYDHKQRGFGGQTKPIFHKKAKTTKKVTLRLECKECKAKKQLVIARCKHFELGEKKQATGHQY 342
            MVN+PKERRT+CK K+C KHTVHKVTQYKAGKAS FAQG RRY+ KQ+GFGGQTKP+FHKKAKTTKK+TLR+ECKECKAKKQL I R KHFELGEKK+++GHQY
Sbjct:    1 MVNIPKERRTFCKGKKCRKHTVHKVTQYKAGKASKFAQGARRYNEKQQGFGGQTKPVFHKKAKTTKKITLRMECKECKAKKQLPIKRTKHFELGEKKKSSGHQY 104          
BLAST of mRNA_H-elongata_contig7317.14995.1 vs. uniprot
Match: A0A418ASI0_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418ASI0_9STRA)

HSP 1 Score: 181 bits (459), Expect = 1.100e-56
Identity = 85/105 (80.95%), Postives = 97/105 (92.38%), Query Frame = 1
Query:   28 QMVNVPKERRTYCKAKRCNKHTVHKVTQYKAGKASNFAQGKRRYDHKQRGFGGQTKPIFHKKAKTTKKVTLRLECKECKAKKQLVIARCKHFELGEKKQATGHQY 342
            QMVN+PKERRT+CK K+C KHTVHKVTQYKAGKAS +AQG RRY+ KQ+GFGGQTKP+FHKKAKTTKK+TLR+ECKECKAKKQL I R KHFELGEKK+++GHQY
Sbjct:   41 QMVNIPKERRTFCKGKKCRKHTVHKVTQYKAGKASKYAQGARRYNEKQQGFGGQTKPVFHKKAKTTKKITLRMECKECKAKKQLPIKRTKHFELGEKKKSSGHQY 145          
BLAST of mRNA_H-elongata_contig7317.14995.1 vs. uniprot
Match: A0A7R9UFU1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UFU1_9STRA)

HSP 1 Score: 179 bits (454), Expect = 1.720e-56
Identity = 83/104 (79.81%), Postives = 94/104 (90.38%), Query Frame = 1
Query:   31 MVNVPKERRTYCKAKRCNKHTVHKVTQYKAGKASNFAQGKRRYDHKQRGFGGQTKPIFHKKAKTTKKVTLRLECKECKAKKQLVIARCKHFELGEKKQATGHQY 342
            MVNVPKERRTYCK+  C +H +HKVTQYK+GKASNFAQGKRRYDHKQ G+GGQTKPIFHKKAKTTKK+TLRLECK+CK+K  LV+ RCKHFE+GEKK+  GHQY
Sbjct:    1 MVNVPKERRTYCKSPICRRHELHKVTQYKSGKASNFAQGKRRYDHKQMGYGGQTKPIFHKKAKTTKKITLRLECKKCKSKSHLVVKRCKHFEIGEKKKTAGHQY 104          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7317.14995.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWP4_ECTSI7.680e-6796.19Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YP36_9STRA5.560e-6289.42Zinc-binding ribosomal protein n=1 Tax=Tribonema m... [more]
A0A7S2UXA0_9STRA2.270e-6188.46Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
F0YGF9_AURAN4.580e-6188.46RL44_PICJA 60S ribosomal protein L44 n=2 Tax=Pelag... [more]
W7TXG3_9STRA7.290e-5884.6260s ribosomal protein l44 n=2 Tax=Monodopsidaceae ... [more]
A0A7S3NIT2_9STRA1.000e-5789.00Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
I6ZGD0_9STRA2.970e-5783.65Ribosomal protein L44 n=1 Tax=Aurantiochytrium sp.... [more]
A0A485LSL1_9STRA6.000e-5781.73Aste57867_25253 protein n=7 Tax=Saprolegniaceae Ta... [more]
A0A418ASI0_9STRA1.100e-5680.95Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A7R9UFU1_9STRA1.720e-5679.81Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7317contigH-elongata_contig7317:2357..4221 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score207.2
Seed ortholog evalue3.7e-51
Seed eggNOG ortholog2880.D7FWP4
KEGG koko:K02929
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG1631@1,KOG3464@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal protein L44e
Ec32 orthologEc-06_001420.1
Exons3
Model size345
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7317.14995.1prot_H-elongata_contig7317.14995.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7317 2387..4221 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931133.425817-UTR-H-elongata_contig7317:2356..23861622931133.425817-UTR-H-elongata_contig7317:2356..2386Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7317 2357..2386 +
1691679711.9627917-UTR-H-elongata_contig7317:2356..23861691679711.9627917-UTR-H-elongata_contig7317:2356..2386Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7317 2357..2386 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931133.4459422-CDS-H-elongata_contig7317:2386..25001622931133.4459422-CDS-H-elongata_contig7317:2386..2500Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7317 2387..2500 +
1691679711.974137-CDS-H-elongata_contig7317:2386..25001691679711.974137-CDS-H-elongata_contig7317:2386..2500Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7317 2387..2500 +
1622931133.4977324-CDS-H-elongata_contig7317:3743..38121622931133.4977324-CDS-H-elongata_contig7317:3743..3812Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7317 3744..3812 +
1691679711.984426-CDS-H-elongata_contig7317:3743..38121691679711.984426-CDS-H-elongata_contig7317:3743..3812Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7317 3744..3812 +
1622931133.533374-CDS-H-elongata_contig7317:4089..42211622931133.533374-CDS-H-elongata_contig7317:4089..4221Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7317 4090..4221 +
1691679711.995306-CDS-H-elongata_contig7317:4089..42211691679711.995306-CDS-H-elongata_contig7317:4089..4221Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7317 4090..4221 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7317.14995.1

>prot_H-elongata_contig7317.14995.1 ID=prot_H-elongata_contig7317.14995.1|Name=mRNA_H-elongata_contig7317.14995.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
MVNVPKERRTYCKAKRCNKHTVHKVTQYKAGKASNFAQGKRRYDHKQRGF
GGQTKPIFHKKAKTTKKVTLRLECKECKAKKQLVIARCKHFELGEKKQAT
GHQY*
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mRNA from alignment at H-elongata_contig7317:2357..4221+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7317.14995.1 ID=mRNA_H-elongata_contig7317.14995.1|Name=mRNA_H-elongata_contig7317.14995.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1865bp|location=Sequence derived from alignment at H-elongata_contig7317:2357..4221+ (Himanthalia elongata Himel1 dioecious)
CGTCTGGTTCCACGTGGATCGACCGTTCAGATGGTCAACGTTCCCAAGGA GAGGCGGACATACTGCAAGGCCAAGAGGTGCAACAAGCACACCGTGCACA AAGTCACCCAGTACAAAGCCGGCAAGGCCTCGAACTTCGCCCAGGTAAAC CGCGTTACCTTAGTTTTATCCGCCGCCTATTGGGAGCCCGGAGACTAGTT AAACCAACGCCAGGAACGTTTCTTGTGGTTTGTACTGCTGTAGAGTTGAC CCGATGCGACCATCGGGGAACCCGATTAATGTGTGACGATCACATGTAGC AGAGTTTAGTTCCCTCCTTCTTGTGATTAGCTGAACAGGGAGGAAATCAA TTATTTTTCCCTATCCTCGTTCGCGCCTGAGAATTTGGTATTAGTGGATA TGTGCAATATACAGTCGTTTGACGATTTTTTTTGCTGATTCCTTGTAATG GACACATTCGAACCTGGAGATACTTGGTCCTCTAGACTTTCACCAAACTC GCTGTGTTGAATGTGTGAATGTGTAACTTCTACAATAATTTATCTTCCCG ATTGATGACGACAATACTGCCGAAAAAGTTAACTTCGTGGTATGGGCAAC GATCACCGTCGACATCGCTGCGAGTATGTTTTTTTTTGTTTTTATCCACC ACCCGTTGGCATTCCGATTTTTTAATATATGACATAGGCTAGGCTATGGA AGTCGCAAAACAGTGTCACAGGCCAGGCCGTGCCTGCTTCTTTTGGATAG CCTGATAACGCTGATACACACTGGCGGGGGTGAGTCATCGATTACAGCCC ACCAGTGCTTGGTTGCTTCCGGGTACCTAAATGTTGAAGTTCCAGGACAG TTTTCGTTCGCCGTGACCCTCCGCCAGGGTCAACCCTAAATAATCCACCC CAATCTCCCGCAGCATAGGTTATATAAGGGTGCATTCTGATTCGAACGCG AGTGATGATTGAAGGTACATAACGTTACCTCTTTTCTGCAAAGATCTCGT TTCACGTCCTCCCGGCGGATATATTTTTTAGGGCCTGTCGTCTCTGTGTT TTCCAACAGTGCGAAAGTCGTACCCCCCAGGCGCAAGTGTTTGGATGGTT CTACTTCCCGATGTTTTTTTGGGGTTGCTGGACAGCAACGTCGTTTACGA CAAGCGTCGTTTCTATAGCATTGGAAACAGCTTGAGAGAAAGCGTTGGTC ATCCACCGAAGGGGCAGCTCTGTAGACTCCGTCGGTGCTTCACGCGACGC GCAAATTTATCACGTATGCTTGTCCCCTGCGGGGAAAACAATGTGCTTGT TGCGATTCCGTCAAATGATTCTCGATGCACGTCAATCGCATTCTATCCCC CCCCCCCCTCCCCTTTTTTTTCTTATGCTTTTCGTAGGGCAAGCGCCGGT ATGACCACAAGCAAAGGGGGTTCGGTGGTCAGACGAAGCCCATCTTCCAC AAGAAGGTGAAGCCTGAACCAGCGCCTAAGGGTGTGTGCAGTGTGCACTC GATGCCCCGAAATGATTTTGATTTTAACCGCGTTGTTGAGGAATTGTCGA GATTTCCGTTTCCAATAGACGCGGTAGAAGACACTTATGGTGTAACCTTA CCACATTTTTGGTTACTTGCGCGTCCAGTCGAATATTTTCCGCGGTCGTA TACTGTATAGTAGGCGTTTTTTGTAGGCAAAACTTCCTAAATCCCATGGC TCTCTCAATATCCGGCCACTGTCGTCTCAACAGGCAAAGACGACGAAGAA GGTGACTCTCCGACTGGAGTGCAAGGAGTGCAAGGCCAAGAAGCAACTTG TCATCGCCCGCTGCAAGCACTTCGAGCTCGGCGAAAAGAAGCAGGCCACT GGTCACCAGTATTAA
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Coding sequence (CDS) from alignment at H-elongata_contig7317:2357..4221+

>mRNA_H-elongata_contig7317.14995.1 ID=mRNA_H-elongata_contig7317.14995.1|Name=mRNA_H-elongata_contig7317.14995.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig7317:2357..4221+ (Himanthalia elongata Himel1 dioecious)
ATGGTCAACGTTCCCAAGGAGAGGCGGACATACTGCAAGGCCAAGAGGTG
CAACAAGCACACCGTGCACAAAGTCACCCAGTACAAAGCCGGCAAGGCCT
CGAACTTCGCCCAGATGGTCAACGTTCCCAAGGAGAGGCGGACATACTGC
AAGGCCAAGAGGTGCAACAAGCACACCGTGCACAAAGTCACCCAGTACAA
AGCCGGCAAGGCCTCGAACTTCGCCCAGGGCAAGCGCCGGTATGACCACA
AGCAAAGGGGGTTCGGTGGTCAGACGAAGCCCATCTTCCACAAGAAGGGC
AAGCGCCGGTATGACCACAAGCAAAGGGGGTTCGGTGGTCAGACGAAGCC
CATCTTCCACAAGAAGGCAAAGACGACGAAGAAGGTGACTCTCCGACTGG
AGTGCAAGGAGTGCAAGGCCAAGAAGCAACTTGTCATCGCCCGCTGCAAG
CACTTCGAGCTCGGCGAAAAGAAGCAGGCCACTGGTCACCAGTATTAAGC
AAAGACGACGAAGAAGGTGACTCTCCGACTGGAGTGCAAGGAGTGCAAGG
CCAAGAAGCAACTTGTCATCGCCCGCTGCAAGCACTTCGAGCTCGGCGAA
AAGAAGCAGGCCACTGGTCACCAGTATTAA
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