mRNA_H-elongata_contig73137.14991.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig73137.14991.1 vs. uniprot
Match: D7G6K9_ECTSI (Chaperonin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6K9_ECTSI) HSP 1 Score: 245 bits (626), Expect = 7.800e-80 Identity = 122/138 (88.41%), Postives = 128/138 (92.75%), Query Frame = 1
Query: 1 MSSLVITLDDEVIDKPLQPVSNYILVKMFPAISRTAGGIVLPDEAQDLPCEGKVVAAGPGRTHPLTGTLIPMCVSEGDTVLFSRFSGRKTKYCGEDHMFIQDDDLVLVYRGAEITEGSLKMVRDQVLVAMEKGESETD 414
MSSLVITL+D+VIDKPLQPV NYILVKMF A+SRTAGGIVLPDEAQD+PCEG VVA GPGRTHPLTGTLIPMCVSEGDTVLFSR+SGRK KYCGEDHMFI DDDLVLVYRG E+TE SLKMVRDQVLV EKGESETD
Sbjct: 61 MSSLVITLEDDVIDKPLQPVGNYILVKMFAAVSRTAGGIVLPDEAQDVPCEGLVVAHGPGRTHPLTGTLIPMCVSEGDTVLFSRWSGRKVKYCGEDHMFIMDDDLVLVYRGPELTEDSLKMVRDQVLVVTEKGESETD 198
BLAST of mRNA_H-elongata_contig73137.14991.1 vs. uniprot
Match: A0A835YHA6_9STRA (Chaperonin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHA6_9STRA) HSP 1 Score: 163 bits (412), Expect = 1.280e-47 Identity = 82/138 (59.42%), Postives = 103/138 (74.64%), Query Frame = 1
Query: 1 MSSLVITLDDEVIDKPLQPVSNYILVKMFPAISRTAGGIVLPDEAQDLPCEGKVVAAGPGRTHPLTGTLIPMCVSEGDTVLFSRFSGRKTKYCGEDHMFIQDDDLVLVYRGAEITEGSLKMVRDQVLVAMEKGESETD 414
M+ LV TLDD+VI PLQPVSN+ILVK+ + S T GGIVLPD++ D P EG+VVA GPGR+HP T LIPMCV+ G V++S++SG+K KY G DH I DDDL+LVY G + T +LKM+RDQVLV + + E TD
Sbjct: 49 MAELVHTLDDKVIRGPLQPVSNFILVKIRDSASLTTGGIVLPDQSIDKPSEGEVVATGPGRSHPHTAELIPMCVAPGQRVMYSKYSGKKVKYDGLDHTLITDDDLLLVYEGEKPTAANLKMIRDQVLVKITRSEGRTD 186
BLAST of mRNA_H-elongata_contig73137.14991.1 vs. uniprot
Match: A0A8J2WID0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WID0_9STRA) HSP 1 Score: 137 bits (344), Expect = 1.240e-37 Identity = 70/132 (53.03%), Postives = 90/132 (68.18%), Query Frame = 1
Query: 19 TLDDEVIDKPLQPVSNYILVKMFPAISRTAGGIVLPDEAQDLPCEGKVVAAGPGRTHPLTGTLIPMCVSEGDTVLFSRFSGRKTKYCGEDHMFIQDDDLVLVYRG-AEITEGSLKMVRDQVLVAMEKGESET 411
TLDD I PL+PV+NYILVK+ I T GG+ LPD+A++ P G VVAAG G+ HP TG ++P V+EGD VL+ +F G KYCGEDH I+DDD++L + G A +T G +K V D VLV + K E ET
Sbjct: 32 TLDDAPIGGPLEPVANYILVKIDDGIDATKGGVFLPDQAKEKPSAGIVVAAGAGKAHPDTGVVVPNPVTEGDRVLYGKFDGTSVKYCGEDHQLIKDDDILLSWAGDASMTLGEVKCVADNVLVQVTKVEEET 163
BLAST of mRNA_H-elongata_contig73137.14991.1 vs. uniprot
Match: F0Y075_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y075_AURAN) HSP 1 Score: 116 bits (291), Expect = 1.860e-31 Identity = 53/90 (58.89%), Postives = 68/90 (75.56%), Query Frame = 1
Query: 49 LQPVSNYILVKMFPAISRTAGGIVLPDEAQDLPCEGKVVAAGPGRTHPLTGTLIPMCVSEGDTVLFSRFSGRKTKYCGEDHMFIQDDDLV 318
L PV NY LVK+ T GG++LPD+A++ P EG VVAAGPGR+HP TGTLI M V+EG++VL+ +F G KYCGEDHM I+DDD++
Sbjct: 2 LSPVGNYALVKITEGKDATKGGVLLPDQAKEKPSEGSVVAAGPGRSHPDTGTLIAMPVAEGESVLYGKFDGTPVKYCGEDHMLIRDDDVL 91
BLAST of mRNA_H-elongata_contig73137.14991.1 vs. uniprot
Match: A0A7R9UAA2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAA2_9STRA) HSP 1 Score: 118 bits (295), Expect = 2.540e-30 Identity = 58/130 (44.62%), Postives = 88/130 (67.69%), Query Frame = 1
Query: 22 LDDEVIDKPLQPVSNYILVKMFPAISRTAGGIVLPDEAQDLPCEGKVVAAGPGRTHPLTGTLIPMCVSEGDTVLFSRFSGRKTKYCGEDHMFIQDDDLVLVYRGAEITEGSLKMVRDQVLVAMEKGESET 411
LD I LQPVSN++LVK+ A+++TAGGI++P+ A+ P +G VA GPGR HP TG L+P+ V G+ V++ + G K KY EDH+ +++D+++L Y G I + +++ V D+VLV M K E +T
Sbjct: 33 LDGRPITSDLQPVSNFVLVKLRDAMAQTAGGIIMPETAKKRPNDGLAVAVGPGRYHPETGKLMPVSVKAGERVMYGEYMGTKIKYNEEDHVLVREDEVLLRYTGDIIKKDTVEPVGDKVLVEMTKEEKQT 162
BLAST of mRNA_H-elongata_contig73137.14991.1 vs. uniprot
Match: A0A7S2E919_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E919_9STRA) HSP 1 Score: 114 bits (286), Expect = 7.990e-29 Identity = 57/128 (44.53%), Postives = 85/128 (66.41%), Query Frame = 1
Query: 13 VITLDDEVIDKPLQPVSNYILVKMFPAISRTAGGIVLPDEAQDLPCEGKVVAAGPGRTHPLTGTLIPMCVSEGDTVLFSRFSGRKTKYCGEDHMFIQDDDLVLVYRGAEITEGSLKMVRDQVLVAMEK 396
V+TL+ E I + P+ N++LV+ ++S T GGI+LPD++++ P EG+VVAAGPG+ HP TGT I V+ G VL+ +F+G Y ED I+DDD++L Y G +T ++ VRD VLV +E+
Sbjct: 65 VVTLEGEKIRGEITPLGNFVLVRQKDSLSATGGGILLPDQSKERPTEGEVVAAGPGKLHPHTGTRITNPVTAGVNVLYGKFAGTPLNYNDEDMQMIRDDDIMLYYDGVSMTRDNVVPVRDYVLVELEE 192
BLAST of mRNA_H-elongata_contig73137.14991.1 vs. uniprot
Match: A0A7S2XTD7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XTD7_9STRA) HSP 1 Score: 107 bits (268), Expect = 5.470e-26 Identity = 57/126 (45.24%), Postives = 79/126 (62.70%), Query Frame = 1
Query: 19 TLDDEVIDKPLQPVSNYILVKMFPAISRTAGGIVLPDEAQDLPCEGKVVAAGPGRTHPLTGTLIPMCVSEGDTVLFSRFSGRKTKYCGEDHMFIQDDDLVLVYRGAEITEGSLKMVRDQVLVAMEK 396
TLD E I P+ P+ N++LV+ +S T GGI+LPD+AQ+ P EG+V+AAGPG HP TG LI V +G VL+ ++ G Y ED I+DDD++L Y G +T ++ RD VLV + K
Sbjct: 57 TLDGETIRGPIAPLGNFVLVRTKDMLSSTEGGILLPDQAQERPTEGEVMAAGPGNIHPDTGILIDNPVIKGMNVLYGKYDGVGMVYNDEDVQMIRDDDVLLYYTGIRMTLENVTPCRDYVLVEIPK 182
BLAST of mRNA_H-elongata_contig73137.14991.1 vs. uniprot
Match: A0A8J6CGT7_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CGT7_DIALT) HSP 1 Score: 102 bits (253), Expect = 6.440e-24 Identity = 50/122 (40.98%), Postives = 76/122 (62.30%), Query Frame = 1
Query: 19 TLDDEVIDKPLQPVSNYILVKMFPAISRTAGGIVLPDEAQDLPCEGKVVAAGPGRTHPLTGTLIPMCVSEGDTVLFSRFSGRKTKYCGEDHMFIQDDDLVLVYRGAEITEGSLKMVRDQVLV 384
TLD+ V+D PLQP+ + +LVK+ A +T GG+ L E D P G VVAAGPG+ HP T +I + GDT+LF ++G K KYC +DH+ + D+++ A +T+ + VRD+ ++
Sbjct: 50 TLDNMVLDGPLQPLKDQVLVKLAGAEKQTKGGLFLTGEMTDKPTRGTVVAAGPGKPHPYTDVMITNPIKAGDTILFGSYTGTKVKYCQDDHVMLSMDEVL-----ATVTDKGVVPVRDRAML 166
BLAST of mRNA_H-elongata_contig73137.14991.1 vs. uniprot
Match: A0A6S8V3T8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8V3T8_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 1.330e-21 Identity = 44/130 (33.85%), Postives = 82/130 (63.08%), Query Frame = 1
Query: 22 LDDEVIDKPLQPVSNYILVKMFPAISRTAGGIVLPDEAQDLPCEGKVVAAGPGRTHPLTGTLIPMCVSEGDTVLFSRFSGRKTKYCGEDHMFIQDDDLVLVYRGAEITEGSLKMVRDQVLVAMEKGESET 411
+D+E + PL+P+S+Y+LVK+ +T+GGI++ D+A++ P G V GPG HP +GT++P+ GD V++ R++G KY E H ++D D+ + + G E+T G+ + + +L+ + + + +T
Sbjct: 40 IDNEDVGGPLEPLSDYLLVKVDETAEKTSGGIMISDKAKEPPPTGVVQTVGPGALHPESGTVLPIDCKAGDNVMWGRYAGANVKYQRESHTLLKDRDVQMSWNG-ELTSGNARPIGGNILIKVREEKGQT 168
BLAST of mRNA_H-elongata_contig73137.14991.1 vs. uniprot
Match: A0A7S4N500_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4N500_9EUKA) HSP 1 Score: 92.4 bits (228), Expect = 7.340e-21 Identity = 48/130 (36.92%), Postives = 75/130 (57.69%), Query Frame = 1
Query: 22 LDDEVIDKPLQPVSNYILVKMFPAISRTAGGIVLPDEAQDLPCEGKVVAAGPGRTHPLTGTLIPMCVSEGDTVLFSRFSGRKTKYCGEDHMFIQDDDLVLVYRGAEITEGSLKMVRDQVLVAMEKGESET 411
L++ V+DKP+ P+ + +L+K+ +T GG+ +P A + P EG VVAAGPG THP+TGT + + GD VLF+ +G + Y E H+F + D+ + G + G + D VLV + + ET
Sbjct: 31 LNNIVVDKPISPLGSQLLIKLNKVDDKTEGGLFVPTGASEKPKEGVVVAAGPGGTHPVTGTDVTNPYAPGDLVLFAEGAGERVDYNSEKHIFCESTDVYGKFTGDAASVGDFEPACDCVLVTITEAPEET 160 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73137.14991.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig73137.14991.1 >prot_H-elongata_contig73137.14991.1 ID=prot_H-elongata_contig73137.14991.1|Name=mRNA_H-elongata_contig73137.14991.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=138bp MSSLVITLDDEVIDKPLQPVSNYILVKMFPAISRTAGGIVLPDEAQDLPCback to top mRNA from alignment at H-elongata_contig73137:879..3121+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig73137.14991.1 ID=mRNA_H-elongata_contig73137.14991.1|Name=mRNA_H-elongata_contig73137.14991.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2243bp|location=Sequence derived from alignment at H-elongata_contig73137:879..3121+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig73137:879..3121+ >mRNA_H-elongata_contig73137.14991.1 ID=mRNA_H-elongata_contig73137.14991.1|Name=mRNA_H-elongata_contig73137.14991.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=828bp|location=Sequence derived from alignment at H-elongata_contig73137:879..3121+ (Himanthalia elongata Himel1 dioecious)back to top |