mRNA_H-elongata_contig7313.14990.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig7313.14990.1 vs. uniprot
Match: D7FWN9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWN9_ECTSI) HSP 1 Score: 240 bits (612), Expect = 1.750e-71 Identity = 130/177 (73.45%), Postives = 151/177 (85.31%), Query Frame = 3
Query: 126 QDEELTVVTDYQPVVATG-ANSGPIMVTDPVTGQKMAASDLSDHMRIQLLDPKWKEQQARAAAKQKDTALVDGESMAKSLGSLARKRGDIFGSAEDEEKQLLAESNARKKRKEDVTRVMWDGNIATADAARQAALAKQIAAPRTATRTGPISNIGPQIPGRGA------IRALPPLP 635
+D+++ VVTDY+P VATG A + P MV DP+TG +AAS+LSDHMRIQL+DPKW+E+QARAAAKQKDTAL +GES+A SL SLARKRGDIFGSAEDEE+QLL ESNARKKRKE+VTRV+WDGNIATA AARQAAL KQI PRTA RTGPISNIGPQ+ GRG +++LPPLP
Sbjct: 415 EDDDIHVVTDYKPGVATGSATALPTMVIDPITGATVAASELSDHMRIQLMDPKWREEQARAAAKQKDTALAEGESIAASLKSLARKRGDIFGSAEDEEQQLLNESNARKKRKEEVTRVLWDGNIATATAARQAALQKQINTPRTAQRTGPISNIGPQVSGRGGGRGGAQMQSLPPLP 591
BLAST of mRNA_H-elongata_contig7313.14990.1 vs. uniprot
Match: A0A7S3UTY2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTY2_HETAK) HSP 1 Score: 118 bits (295), Expect = 7.810e-30 Identity = 63/122 (51.64%), Postives = 91/122 (74.59%), Query Frame = 3
Query: 138 LTVVTDYQPVVATGANSGPIMVTDPVTGQKMAASDLSDHMRIQLLDPKWKEQQARAAAKQKDTALVDGESMAKSLGSLARKRGDIFGSAEDEEKQLLAESNARKKRKEDVTRVMWDGNIATA 503
+ VV DY+P VA GA + P + DP+TG+++ ++L + MRIQLLDPKW EQ RAA +QKDT L G+++A++L ++RKRGDIFG+AE+E QL+ E+ RK+R E+ RV+WDG+ +TA
Sbjct: 2 IKVVEDYRPRVA-GAEALPQTMVDPITGKEVPIAELPERMRIQLLDPKWLEQTRRAADRQKDTGLAAGDAIAENLRVMSRKRGDIFGTAEEEATQLMEEAKRRKRRDEE-NRVVWDGHSSTA 121
BLAST of mRNA_H-elongata_contig7313.14990.1 vs. uniprot
Match: A0A7S2Y1I0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1I0_9STRA) HSP 1 Score: 113 bits (282), Expect = 1.810e-26 Identity = 72/174 (41.38%), Postives = 100/174 (57.47%), Query Frame = 3
Query: 120 DSQDEELTVVTDYQPVVATGANSGPIMVTDPVTGQKMAASDLSDHMRIQLLDPKWKEQQARAAAKQKDTALVDGESMAKSLGSLARKRGDIFGSAEDEEKQLLAESNARKKRKEDVTRVMWDGNIATADAARQAALAKQIAAPRTATRTGPISNIGPQIP----GRGAIRALPP 629
+ +D + VV DY P +A+G P + DP+TGQ++ S++ + MRIQLLDPKW+EQ RA KQ+DT L GE++A +L +A+KRGDIFG+AE+E ED RV+WDG+ A+A AA++ A K AT +IGP P G GA + P
Sbjct: 8 EEEDPNIKVVEDYTPRLASGKKL-PTHMVDPITGQEVPISEIPERMRIQLLDPKWREQTQRAQDKQRDTGLAAGEAIASNLRKIAQKRGDIFGTAEEEXXXXXXXXXXXXXXXED-NRVIWDGHSASAAAAQEEARHKPAQPAPAATMGTKGPSIGPAAPNKPSGGGAYNPMQP 179
BLAST of mRNA_H-elongata_contig7313.14990.1 vs. uniprot
Match: K8Z790_NANGC (Splicing factor 3A subunit 1 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z790_NANGC) HSP 1 Score: 111 bits (278), Expect = 1.410e-24 Identity = 53/125 (42.40%), Postives = 90/125 (72.00%), Query Frame = 3
Query: 117 LDSQDEELTVVTDYQPVVATGANSG-PIMVTDPVTGQKMAASDLSDHMRIQLLDPKWKEQQARAAAKQKDTALVDGESMAKSLGSLARKRGDIFGSAEDEEKQLLAESNARKKRKEDVTRVMWDG 488
+D + E+ VV+ Y+P VA G + P ++ DPVTG+++ +D+ +HMRIQ LDP+W+++Q RA K+K++AL +G +A ++ S A+KR DIFG++E+EE+Q+LA+ + R+E+ R++W G
Sbjct: 41 MDLDEGEIKVVSSYKPRVAAGGGAARPEVMLDPVTGKEVPIADVGEHMRIQFLDPRWRDEQRRALEKRKESALAEGGDIAANVRSFAKKRTDIFGTSEEEERQILADQERFRARQEENQRMIWQG 165
BLAST of mRNA_H-elongata_contig7313.14990.1 vs. uniprot
Match: A0A4D9CLT9_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CLT9_9STRA) HSP 1 Score: 111 bits (278), Expect = 4.880e-24 Identity = 53/125 (42.40%), Postives = 90/125 (72.00%), Query Frame = 3
Query: 117 LDSQDEELTVVTDYQPVVATGANSG-PIMVTDPVTGQKMAASDLSDHMRIQLLDPKWKEQQARAAAKQKDTALVDGESMAKSLGSLARKRGDIFGSAEDEEKQLLAESNARKKRKEDVTRVMWDG 488
+D + E+ VV+ Y+P VA G + P ++ DPVTG+++ +D+ +HMRIQ LDP+W+++Q RA K+K++AL +G +A ++ S A+KR DIFG++E+EE+Q+LA+ + R+E+ R++W G
Sbjct: 348 MDLDEGEIKVVSSYKPRVAAGGGAARPEVMLDPVTGKEVPIADVGEHMRIQFLDPRWRDEQRRALEKRKESALAEGGDIAANVRSFAKKRTDIFGTSEEEERQILADQERFRARQEENQRMIWQG 472
BLAST of mRNA_H-elongata_contig7313.14990.1 vs. uniprot
Match: W7TP71_9STRA (SWAP/Surp n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TP71_9STRA) HSP 1 Score: 110 bits (276), Expect = 9.270e-24 Identity = 53/124 (42.74%), Postives = 89/124 (71.77%), Query Frame = 3
Query: 120 DSQDEELTVVTDYQPVVATGANSG-PIMVTDPVTGQKMAASDLSDHMRIQLLDPKWKEQQARAAAKQKDTALVDGESMAKSLGSLARKRGDIFGSAEDEEKQLLAESNARKKRKEDVTRVMWDG 488
D + E+ VV+ Y+P VA G + P ++ DPVTG+++ +D+ +HMRIQ LDP+W+++Q RA K+K++AL +G +A ++ S A+KR DIFG++E+EE+Q+LA+ + R+E+ R++W G
Sbjct: 378 DLDEGEIKVVSSYKPRVAAGGGAARPEVMLDPVTGKEVPIADVGEHMRIQFLDPRWRDEQRRALEKRKESALAEGGDIAANVRSFAKKRTDIFGTSEEEERQILADQERFRARQEENQRMIWQG 501
BLAST of mRNA_H-elongata_contig7313.14990.1 vs. uniprot
Match: A0A7R9U8G3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8G3_9STRA) HSP 1 Score: 103 bits (256), Expect = 3.880e-21 Identity = 53/129 (41.09%), Postives = 82/129 (63.57%), Query Frame = 3
Query: 120 DSQDEELTVVTDYQPVVATGANSGPIMVTDPVTGQKMAASDLSDHMRIQLLDPKWKEQQARAAAKQKDTALVDGESMAKSLGSLARKRGDIFGSAEDEEKQLLAESNARKKRKEDVTRVMWDGNIATAD 506
D+ +E + VV DY+P V T P +V DPV+G+ + ++S+HMRIQL+DPK++ + RA +Q +T + G S+A +L S A +R DIFGS E+EE LL ++ +K E+ ++W+G A AD
Sbjct: 372 DAAEEGIKVVADYKPQVKTVTADAPKLVVDPVSGKAVPIDEVSEHMRIQLIDPKYRTETLRAQQRQSETNIAAGSSIADNLKSFANRRVDIFGSTEEEELALLKDARDAQKNAEERQAIIWEGRNAKAD 500
BLAST of mRNA_H-elongata_contig7313.14990.1 vs. uniprot
Match: A0A7S3LZ45_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3LZ45_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 2.400e-20 Identity = 56/134 (41.79%), Postives = 83/134 (61.94%), Query Frame = 3
Query: 120 DSQDEELTVVTDYQ--PVVATGANSGPIMVTDPVTGQKMAASDLSDHMRIQLLDPKWKEQQARAAAKQKDTALVDGESMAKSLGSLARKRGDIFGSAED----EEKQLLAESNARKKRKEDV-TRVMWDGNIAT 500
D +L VV DYQ + AN+ +M+ DP++G+ + S +S+HMRIQLLDP+W+EQQ R KQ++T +G S+A SL + ARKRGDIFG A +AE +++RK ++ ++V WDG+ T
Sbjct: 2 DEDLSDLKVVADYQHPSSLRANANTEGLMMVDPISGKAVPVSQMSEHMRIQLLDPRWREQQQRFVDKQRETGYAEGGSIADSLKNFARKRGDIFGQAATGSGPNTAAAIAELEEQERRKNEIQSQVQWDGHYGT 135
BLAST of mRNA_H-elongata_contig7313.14990.1 vs. uniprot
Match: A0A7S1XRM6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XRM6_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 3.190e-18 Identity = 49/121 (40.50%), Postives = 75/121 (61.98%), Query Frame = 3
Query: 132 EELTVVTDYQPVVATGANSG---PIMVTDPVTGQKMAASDLSDHMRIQLLDPKWKEQQARAAAKQKDTALVDGESMAKSLGSLARKRGDIFGSAEDEEKQLLAESNARKKRKEDVTRVMWD 485
E + VV DY+ ATG +G P +V DPV+G+ + +S+HMRIQL+DPK++EQ +A + +T G S+A +L + A +R DIFGS E+EE +LL + KK+ E ++W+
Sbjct: 53 EGIKVVADYK---ATGRGAGAQAPRLVVDPVSGESVPIDQVSEHMRIQLIDPKYREQNLKAQQRLSETNFASGSSIANNLKTFATRRSDIFGSTEEEELELLKDRRDAKKKAEQRQAIIWE 170
BLAST of mRNA_H-elongata_contig7313.14990.1 vs. uniprot
Match: A0A7S2K8M8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K8M8_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 1.270e-17 Identity = 55/131 (41.98%), Postives = 82/131 (62.60%), Query Frame = 3
Query: 132 EELTVVTDYQPVVATGANS----GPIMVTDPVTGQKMAASDLSDHMRIQLLDPKWKEQQARAAAKQKDTALVDGESMAKSLGSLARKRGDIFGSAEDEEKQLLAESNARKKRKEDVTRVMWDGNIATADAA 512
E++ VV DY P V A++ + DP+TG+ +A +D+S+HMRIQLLDPKW ++ R KQK++ V G+ +A ++ LA++R DIFGSAE+ L E++ KKR E+ R+M + A A AA
Sbjct: 58 EQIKVVPDYTPKVVDSASTLTDTTRTHMIDPITGKAVALTDMSEHMRIQLLDPKWAAEKRRFLEKQKESNFVAGDQIASNINRLAQQRSDIFGSAEE---AALREADT-KKRMEEANRIMREQASAAAAAA 184 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7313.14990.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig7313.14990.1 >prot_H-elongata_contig7313.14990.1 ID=prot_H-elongata_contig7313.14990.1|Name=mRNA_H-elongata_contig7313.14990.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=209bp MVTDPVTGQKMAASDLSDHMRIQLLDPKWKEQQARAAAKQKDTALVDGESback to top mRNA from alignment at H-elongata_contig7313:6877..8077- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig7313.14990.1 ID=mRNA_H-elongata_contig7313.14990.1|Name=mRNA_H-elongata_contig7313.14990.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1201bp|location=Sequence derived from alignment at H-elongata_contig7313:6877..8077- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig7313:6877..8077- >mRNA_H-elongata_contig7313.14990.1 ID=mRNA_H-elongata_contig7313.14990.1|Name=mRNA_H-elongata_contig7313.14990.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1254bp|location=Sequence derived from alignment at H-elongata_contig7313:6877..8077- (Himanthalia elongata Himel1 dioecious)back to top |