mRNA_H-elongata_contig73112.14988.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig73112.14988.1
Unique NamemRNA_H-elongata_contig73112.14988.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig73112.14988.1 vs. uniprot
Match: A0A6H5LAA3_9PHAE (PHS protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LAA3_9PHAE)

HSP 1 Score: 200 bits (508), Expect = 2.850e-59
Identity = 90/112 (80.36%), Postives = 101/112 (90.18%), Query Frame = 1
Query:    1 PLLALAGFIFLPLVWSVPEAMVTAELSSTFPEAAGCVAWVSTAFGPFWGWMEGYCTWVSGVTDNSLYPVLFLDYLVSLLSEDNFIRRDGLGRWGCIVVLNVVMSLLTYRGLR 336
            P LAL GF+FLP+VWS+PEA+VTAELS+TFPEAAGCVAWVSTAFGPFWGWMEGY +W+SGV DNSLYPVLFLDYLVSLL  D+F+R DGLGRWGCIV LN+ +S L YRGLR
Sbjct:  137 PFLALMGFLFLPMVWSIPEALVTAELSTTFPEAAGCVAWVSTAFGPFWGWMEGYASWMSGVADNSLYPVLFLDYLVSLLPRDSFLREDGLGRWGCIVCLNLGLSYLAYRGLR 248          
BLAST of mRNA_H-elongata_contig73112.14988.1 vs. uniprot
Match: A0A5J4Y4F8_9CHLO (Neutral amino acid transport n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y4F8_9CHLO)

HSP 1 Score: 137 bits (344), Expect = 9.020e-36
Identity = 65/111 (58.56%), Postives = 86/111 (77.48%), Query Frame = 1
Query:    1 PLLALAGFIFLPLVWSVPEAMVTAELSSTFPEAAGCVAWVSTAFGPFWGWMEGYCTWVSGVTDNSLYPVLFLDYLVSLLSEDNFIRRDGLGRWGCIVVLNVVMSLLTYRGL 333
            PLLA+ GF+ LP++WSVPEA++TAEL++TFPE +G VAWV+ AFGPFWG+ EG+ +WVSGVTDNSLYPV+FL YL +L+       R G  R   +VV+++ +S L YRGL
Sbjct:   59 PLLAILGFLLLPIIWSVPEALITAELATTFPENSGYVAWVTAAFGPFWGFQEGFWSWVSGVTDNSLYPVMFLSYLDALVPG----LRTGWQRTILLVVVSLALSYLNYRGL 165          
BLAST of mRNA_H-elongata_contig73112.14988.1 vs. uniprot
Match: A0A7S3M5W3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M5W3_9STRA)

HSP 1 Score: 127 bits (318), Expect = 4.030e-35
Identity = 65/118 (55.08%), Postives = 84/118 (71.19%), Query Frame = 1
Query:    1 PLLALAGFIFLPLVWSVPEAMVTAELSSTFPEAAGCVAWVSTAFGPFWGWMEGYCTWVSGVTDNSLYPVLFLDYLVSLLSEDN-----FIRRDG--LGRWGCIVVLNVVMSLLTYRGL 333
            P+ AL GF  L LVW +PEA+VTAELS+  PEA+G VAWV TAFGPFW + +G+ +W+SGVTDN+LYP+LFLD LV LLSED      F  + G  + RW  I++   V++ L +RGL
Sbjct:    2 PMYALLGF-SLFLVWVIPEALVTAELSTALPEASGAVAWVDTAFGPFWAFQKGWLSWLSGVTDNALYPILFLDCLVGLLSEDAEHPSIFAAQGGNPIARWSFILITITVLTYLNFRGL 118          
BLAST of mRNA_H-elongata_contig73112.14988.1 vs. uniprot
Match: A0A835YRE6_9STRA (Amino acid permease-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRE6_9STRA)

HSP 1 Score: 132 bits (332), Expect = 2.810e-34
Identity = 63/112 (56.25%), Postives = 84/112 (75.00%), Query Frame = 1
Query:    1 PLLALAGFIFLPLVWSVPEAMVTAELSSTFPEAAGCVAWVSTAFGPFWGWMEGYCTWVSGVTDNSLYPVLFLDYLVSLLSEDNFIRRDGLGRWGCIVVLNVVMSLLTYRGLR 336
            PLL L G + LPL WS+PEA+VTAELS+ FPEA+G VAWVS AFGP+WG+MEGY +W+SGV DNSLY VL LDY++ LL  D+ +  +GL R   ++    ++++L  RGL+
Sbjct:  122 PLLTLLGLVLLPLAWSIPEALVTAELSTAFPEASGFVAWVSAAFGPYWGFMEGYWSWLSGVADNSLYAVLILDYVLRLLDPDSPLM-EGLPRAAFLLATCALLTMLNLRGLQ 232          
BLAST of mRNA_H-elongata_contig73112.14988.1 vs. uniprot
Match: A0A8J9WRS2_9CHLO (Polyamine transporter PUT1 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WRS2_9CHLO)

HSP 1 Score: 132 bits (331), Expect = 7.270e-34
Identity = 62/111 (55.86%), Postives = 82/111 (73.87%), Query Frame = 1
Query:    1 PLLALAGFIFLPLVWSVPEAMVTAELSSTFPEAAGCVAWVSTAFGPFWGWMEGYCTWVSGVTDNSLYPVLFLDYLVSLLSEDNFIRRDGLGRWGCIVVLNVVMSLLTYRGL 333
            PL+AL GF+ LP VWSVPEA+VTAEL++ FPE +G VAWV+ AFGPFWG+ EG+ +W+SGVTDNS+YPVLFL YL +++         G  R  C+   ++++S L YRGL
Sbjct:   77 PLVALLGFLILPFVWSVPEALVTAELATAFPEDSGYVAWVTAAFGPFWGFQEGWWSWLSGVTDNSVYPVLFLSYLDAVVPG----LLQGWARSACLFATSILLSYLNYRGL 183          
BLAST of mRNA_H-elongata_contig73112.14988.1 vs. uniprot
Match: A0A2P6TDB3_CHLSO (Putative polyamine transporter isoform B n=2 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TDB3_CHLSO)

HSP 1 Score: 132 bits (333), Expect = 1.150e-33
Identity = 63/111 (56.76%), Postives = 82/111 (73.87%), Query Frame = 1
Query:    1 PLLALAGFIFLPLVWSVPEAMVTAELSSTFPEAAGCVAWVSTAFGPFWGWMEGYCTWVSGVTDNSLYPVLFLDYLVSLLSEDNFIRRDGLGRWGCIVVLNVVMSLLTYRGL 333
            PLLAL GF+ LPL+WSVPEA+VTAEL++TFPE +G VAWV+ AFGPFWG+ +G+  WVSGVTDN++YPVLFLDYL  +      + + G  R   ++  N  ++ L YRGL
Sbjct:  139 PLLALLGFLLLPLIWSVPEALVTAELATTFPENSGYVAWVTAAFGPFWGFQKGFYAWVSGVTDNAVYPVLFLDYLQQVYP----VFQSGWPRMVFLIGFNAALTYLNYRGL 245          
BLAST of mRNA_H-elongata_contig73112.14988.1 vs. uniprot
Match: A0A059LGR7_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LGR7_9CHLO)

HSP 1 Score: 126 bits (317), Expect = 1.600e-33
Identity = 61/111 (54.95%), Postives = 81/111 (72.97%), Query Frame = 1
Query:    1 PLLALAGFIFLPLVWSVPEAMVTAELSSTFPEAAGCVAWVSTAFGPFWGWMEGYCTWVSGVTDNSLYPVLFLDYLVSLLSEDNFIRRDGLGRWGCIVVLNVVMSLLTYRGL 333
            PLLA+ GF+ LPLVWSVPEA+VTAEL++ FPE AG VAWV+ AFGP WG+ EG+ +W+SGVTDN++YPV+ L Y+  L+S    +   G  R   ++ LN  ++ L YRGL
Sbjct:   57 PLLAILGFLILPLVWSVPEALVTAELATAFPENAGYVAWVTAAFGPAWGFQEGFWSWLSGVTDNAVYPVMILTYVGELVS----LPTSGWPRVALLLALNAGLAYLNYRGL 163          
BLAST of mRNA_H-elongata_contig73112.14988.1 vs. uniprot
Match: A0A7I4E6B8_PHYPA (Uncharacterized protein n=4 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4E6B8_PHYPA)

HSP 1 Score: 130 bits (328), Expect = 1.990e-33
Identity = 57/111 (51.35%), Postives = 80/111 (72.07%), Query Frame = 1
Query:    1 PLLALAGFIFLPLVWSVPEAMVTAELSSTFPEAAGCVAWVSTAFGPFWGWMEGYCTWVSGVTDNSLYPVLFLDYLVSLLSEDNFIRRDGLGRWGCIVVLNVVMSLLTYRGL 333
            PLLA+ GF+  P VWS+PEA++TAEL++ FPE  G V W+S AFG FWG+ EG+C W+SGV DN+LYPVLFLDY   ++     +  DG  R+  ++V+ ++++ L YRGL
Sbjct:  101 PLLAIVGFLVFPFVWSIPEALITAELATAFPENGGYVVWISAAFGEFWGFQEGWCKWISGVADNALYPVLFLDYFKRVVP----LFADGPARYIALIVITILLTYLNYRGL 207          
BLAST of mRNA_H-elongata_contig73112.14988.1 vs. uniprot
Match: W9SCG8_9ROSA (Y+L amino acid transporter 2 n=1 Tax=Morus notabilis TaxID=981085 RepID=W9SCG8_9ROSA)

HSP 1 Score: 130 bits (326), Expect = 2.050e-33
Identity = 58/111 (52.25%), Postives = 82/111 (73.87%), Query Frame = 1
Query:    1 PLLALAGFIFLPLVWSVPEAMVTAELSSTFPEAAGCVAWVSTAFGPFWGWMEGYCTWVSGVTDNSLYPVLFLDYLVSLLSEDNFIRRDGLGRWGCIVVLNVVMSLLTYRGL 333
            PLLALAGF+  P+VWS+P A++TAE+ +TFPE +GC+ W+S+A GPFWG+ +G+  WVSGV DN+LYP+LFLDYL S       +   G+ R   ++V  VV++ ++YRGL
Sbjct:   56 PLLALAGFLVFPIVWSIPGALITAEMGTTFPENSGCIVWMSSALGPFWGFQQGWMKWVSGVIDNALYPILFLDYLKSAFP----VLGGGVPRIIAVLVFTVVLTYMSYRGL 162          
BLAST of mRNA_H-elongata_contig73112.14988.1 vs. uniprot
Match: A0A0B0P988_GOSAR (Transporter protein n=23 Tax=Gossypium TaxID=3633 RepID=A0A0B0P988_GOSAR)

HSP 1 Score: 129 bits (325), Expect = 3.090e-33
Identity = 61/111 (54.95%), Postives = 81/111 (72.97%), Query Frame = 1
Query:    1 PLLALAGFIFLPLVWSVPEAMVTAELSSTFPEAAGCVAWVSTAFGPFWGWMEGYCTWVSGVTDNSLYPVLFLDYLVSLLSEDNFIRRDGLGRWGCIVVLNVVMSLLTYRGL 333
            PLLAL GF+ +P VWSVPEA++TAEL + FPE  G V WVS+A GP+WG+ +G+  W+SGV DN+LYPVLFLDYL S +        +GL R   ++VL VV++ ++YRGL
Sbjct:   76 PLLALLGFLLVPFVWSVPEALITAELGTMFPENGGYVVWVSSALGPYWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPA----LENGLPRTVAVLVLTVVLTYMSYRGL 182          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73112.14988.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LAA3_9PHAE2.850e-5980.36PHS protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A5J4Y4F8_9CHLO9.020e-3658.56Neutral amino acid transport n=1 Tax=Trebouxia sp.... [more]
A0A7S3M5W3_9STRA4.030e-3555.08Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A835YRE6_9STRA2.810e-3456.25Amino acid permease-domain-containing protein n=1 ... [more]
A0A8J9WRS2_9CHLO7.270e-3455.86Polyamine transporter PUT1 n=1 Tax=Coccomyxa sp. O... [more]
A0A2P6TDB3_CHLSO1.150e-3356.76Putative polyamine transporter isoform B n=2 Tax=C... [more]
A0A059LGR7_9CHLO1.600e-3354.95Uncharacterized protein (Fragment) n=1 Tax=Helicos... [more]
A0A7I4E6B8_PHYPA1.990e-3351.35Uncharacterized protein n=4 Tax=Physcomitrium pate... [more]
W9SCG8_9ROSA2.050e-3352.25Y+L amino acid transporter 2 n=1 Tax=Morus notabil... [more]
A0A0B0P988_GOSAR3.090e-3354.95Transporter protein n=23 Tax=Gossypium TaxID=3633 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73112contigH-elongata_contig73112:745..1780 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score204.1
Seed ortholog evalue3.4e-50
Seed eggNOG ortholog2880.D7FNQ0
Preferred namePUT1
KEGG koko:K11584
KEGG Pathwayko03015,ko04071,ko04113,ko04114,ko04151,ko04152,ko04261,ko04728,ko05165,map03015,map04071,map04113,map04114,map04151,map04152,map04261,map04728,map05165
GOsGO:0002376,GO:0003333,GO:0003674,GO:0005215,GO:0005342,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0005887,GO:0006082,GO:0006520,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006865,GO:0006928,GO:0006950,GO:0008150,GO:0008152,GO:0008509,GO:0008514,GO:0009266,GO:0009408,GO:0009628,GO:0009987,GO:0015075,GO:0015171,GO:0015179,GO:0015203,GO:0015291,GO:0015297,GO:0015318,GO:0015695,GO:0015696,GO:0015711,GO:0015807,GO:0015839,GO:0015846,GO:0015849,GO:0016020,GO:0016021,GO:0016043,GO:0016477,GO:0019752,GO:0022607,GO:0022804,GO:0022857,GO:0031224,GO:0031226,GO:0034220,GO:0040011,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0046942,GO:0046943,GO:0048870,GO:0050896,GO:0050900,GO:0051179,GO:0051234,GO:0051674,GO:0055085,GO:0065003,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0098656,GO:1901564,GO:1902047,GO:1902475,GO:1903825,GO:1905039
EggNOG free text desc.L-alpha-amino acid transmembrane transport
EggNOG OGsCOG0531@1,KOG1287@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036
Hectar predicted targeting categorysignal peptide
Exons3
Model size339
Cds size339
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73112.14988.1prot_H-elongata_contig73112.14988.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig73112 745..1780 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931132.6947944-CDS-H-elongata_contig73112:744..8611622931132.6947944-CDS-H-elongata_contig73112:744..861Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73112 745..861 +
1691679711.661508-CDS-H-elongata_contig73112:744..8611691679711.661508-CDS-H-elongata_contig73112:744..861Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73112 745..861 +
1622931132.7351458-CDS-H-elongata_contig73112:1027..11091622931132.7351458-CDS-H-elongata_contig73112:1027..1109Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73112 1028..1109 +
1691679711.6738608-CDS-H-elongata_contig73112:1027..11091691679711.6738608-CDS-H-elongata_contig73112:1027..1109Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73112 1028..1109 +
1622931132.7568526-CDS-H-elongata_contig73112:1640..17801622931132.7568526-CDS-H-elongata_contig73112:1640..1780Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73112 1641..1780 +
1691679711.6835244-CDS-H-elongata_contig73112:1640..17801691679711.6835244-CDS-H-elongata_contig73112:1640..1780Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73112 1641..1780 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig73112.14988.1

>prot_H-elongata_contig73112.14988.1 ID=prot_H-elongata_contig73112.14988.1|Name=mRNA_H-elongata_contig73112.14988.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp
PLLALAGFIFLPLVWSVPEAMVTAELSSTFPEAAGCVAWVSTAFGPFWGW
MEGYCTWVSGVTDNSLYPVLFLDYLVSLLSEDNFIRRDGLGRWGCIVVLN
VVMSLLTYRGLR*
back to top

mRNA from alignment at H-elongata_contig73112:745..1780+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig73112.14988.1 ID=mRNA_H-elongata_contig73112.14988.1|Name=mRNA_H-elongata_contig73112.14988.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1036bp|location=Sequence derived from alignment at H-elongata_contig73112:745..1780+ (Himanthalia elongata Himel1 dioecious)
CCGCTGCTTGCTCTCGCGGGATTTATCTTCCTCCCGCTGGTCTGGTCGGT TCCTGAGGCCATGGTGACGGCGGAGCTTTCCTCGACGTTTCCGGAGGCGG CTGGCTGTGTGGCCTGGGTGAGTGAAGAATAGCGGGGGCGCTGCTGCATT CGATCGTTGTTGTCTCGAGTTGACGTCTCACGCGTAGCTCTGCCCGTCCC GGCACCGTACAAGGTCAGCGCGACGACTTTGACACAAAAGGGCGTTAAGG ACATTACTTCGCTCTTCGCCTATTGATACACAGGTTTCAACGGCGTTCGG ACCGTTCTGGGGTTGGATGGAGGGGTACTGCACCTGGGTGTCTGGCGTGA CGGACAACAGCCTATGTTGAGTAACGCCTCAAGTGTTTTTGTCTGGATTA CTATTCCGCCGAAGCTCTAAGGCGGACGATGAGATTACCACCCCGCCTCA CCGCACCGAGGTTACTGTACCTTAAGTTACTGAGCCATGGGCGTGAACTC GCAGCGTTTGCGCTTGGCAACGTAGCCTGCATCGTCGCGAGCAAGCGCCA GCGGTCGAGTAGAGAGCGCTGTGGGTGAAGTACACACTGTTCGATGGGGG CTCTAGGACACTAAAACTCTTACTCTAGGCACCGTACACAGAGACGAACG ATACAAACGATATAAACGATACAAACGATATATACGATACAAACGTGTTA TCCCCACGATGATGAGATGTTGTAGCTTCCCGTTAATTGCCTTCGCAGGG CTCCCGTGCACTGTCATTCTATGAACCACGTCGGAAGCCGCCAAGCCGTC GCCTTGACAGGGTTATACCGCATTTCGCCCCGTCCTCTCAAACCGTGCCC GTCTTCGCTTCCCTTGGCGACGTCAACTGCCCCGAATGGGTGAAAGACCC GGTGCTCTTTTTGGACTACCTAGTGAGCCTCCTCTCCGAGGATAACTTTA TTCGGCGGGATGGACTGGGCCGCTGGGGTTGCATCGTCGTCCTCAACGTG GTCATGTCTTTACTAACGTACCGTGGCCTCAGGTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig73112:745..1780+

>mRNA_H-elongata_contig73112.14988.1 ID=mRNA_H-elongata_contig73112.14988.1|Name=mRNA_H-elongata_contig73112.14988.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig73112:745..1780+ (Himanthalia elongata Himel1 dioecious)
CCGCTGCTTGCTCTCGCGGGATTTATCTTCCTCCCGCTGGTCTGGTCGGT
TCCTGAGGCCATGGTGACGGCGGAGCTTTCCTCGACGTTTCCGGAGGCGG
CTGGCTGTGTGGCCTGGCCGCTGCTTGCTCTCGCGGGATTTATCTTCCTC
CCGCTGGTCTGGTCGGTTCCTGAGGCCATGGTGACGGCGGAGCTTTCCTC
GACGTTTCCGGAGGCGGCTGGCTGTGTGGCCTGGGTTTCAACGGCGTTCG
GACCGTTCTGGGGTTGGATGGAGGGGTACTGCACCTGGGTGTCTGGCGTG
ACGGACAACAGCCTATGTTTCAACGGCGTTCGGACCGTTCTGGGGTTGGA
TGGAGGGGTACTGCACCTGGGTGTCTGGCGTGACGGACAACAGCCTATAC
CCGGTGCTCTTTTTGGACTACCTAGTGAGCCTCCTCTCCGAGGATAACTT
TATTCGGCGGGATGGACTGGGCCGCTGGGGTTGCATCGTCGTCCTCAACG
TGGTCATGTCTTTACTAACGTACCGTGGCCTCAGGTGAACCCGGTGCTCT
TTTTGGACTACCTAGTGAGCCTCCTCTCCGAGGATAACTTTATTCGGCGG
GATGGACTGGGCCGCTGGGGTTGCATCGTCGTCCTCAACGTGGTCATGTC
TTTACTAACGTACCGTGGCCTCAGGTGA
back to top