mRNA_H-elongata_contig73112.14988.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig73112.14988.1 vs. uniprot
Match: A0A6H5LAA3_9PHAE (PHS protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LAA3_9PHAE) HSP 1 Score: 200 bits (508), Expect = 2.850e-59 Identity = 90/112 (80.36%), Postives = 101/112 (90.18%), Query Frame = 1
Query: 1 PLLALAGFIFLPLVWSVPEAMVTAELSSTFPEAAGCVAWVSTAFGPFWGWMEGYCTWVSGVTDNSLYPVLFLDYLVSLLSEDNFIRRDGLGRWGCIVVLNVVMSLLTYRGLR 336
P LAL GF+FLP+VWS+PEA+VTAELS+TFPEAAGCVAWVSTAFGPFWGWMEGY +W+SGV DNSLYPVLFLDYLVSLL D+F+R DGLGRWGCIV LN+ +S L YRGLR
Sbjct: 137 PFLALMGFLFLPMVWSIPEALVTAELSTTFPEAAGCVAWVSTAFGPFWGWMEGYASWMSGVADNSLYPVLFLDYLVSLLPRDSFLREDGLGRWGCIVCLNLGLSYLAYRGLR 248
BLAST of mRNA_H-elongata_contig73112.14988.1 vs. uniprot
Match: A0A5J4Y4F8_9CHLO (Neutral amino acid transport n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y4F8_9CHLO) HSP 1 Score: 137 bits (344), Expect = 9.020e-36 Identity = 65/111 (58.56%), Postives = 86/111 (77.48%), Query Frame = 1
Query: 1 PLLALAGFIFLPLVWSVPEAMVTAELSSTFPEAAGCVAWVSTAFGPFWGWMEGYCTWVSGVTDNSLYPVLFLDYLVSLLSEDNFIRRDGLGRWGCIVVLNVVMSLLTYRGL 333
PLLA+ GF+ LP++WSVPEA++TAEL++TFPE +G VAWV+ AFGPFWG+ EG+ +WVSGVTDNSLYPV+FL YL +L+ R G R +VV+++ +S L YRGL
Sbjct: 59 PLLAILGFLLLPIIWSVPEALITAELATTFPENSGYVAWVTAAFGPFWGFQEGFWSWVSGVTDNSLYPVMFLSYLDALVPG----LRTGWQRTILLVVVSLALSYLNYRGL 165
BLAST of mRNA_H-elongata_contig73112.14988.1 vs. uniprot
Match: A0A7S3M5W3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M5W3_9STRA) HSP 1 Score: 127 bits (318), Expect = 4.030e-35 Identity = 65/118 (55.08%), Postives = 84/118 (71.19%), Query Frame = 1
Query: 1 PLLALAGFIFLPLVWSVPEAMVTAELSSTFPEAAGCVAWVSTAFGPFWGWMEGYCTWVSGVTDNSLYPVLFLDYLVSLLSEDN-----FIRRDG--LGRWGCIVVLNVVMSLLTYRGL 333
P+ AL GF L LVW +PEA+VTAELS+ PEA+G VAWV TAFGPFW + +G+ +W+SGVTDN+LYP+LFLD LV LLSED F + G + RW I++ V++ L +RGL
Sbjct: 2 PMYALLGF-SLFLVWVIPEALVTAELSTALPEASGAVAWVDTAFGPFWAFQKGWLSWLSGVTDNALYPILFLDCLVGLLSEDAEHPSIFAAQGGNPIARWSFILITITVLTYLNFRGL 118
BLAST of mRNA_H-elongata_contig73112.14988.1 vs. uniprot
Match: A0A835YRE6_9STRA (Amino acid permease-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRE6_9STRA) HSP 1 Score: 132 bits (332), Expect = 2.810e-34 Identity = 63/112 (56.25%), Postives = 84/112 (75.00%), Query Frame = 1
Query: 1 PLLALAGFIFLPLVWSVPEAMVTAELSSTFPEAAGCVAWVSTAFGPFWGWMEGYCTWVSGVTDNSLYPVLFLDYLVSLLSEDNFIRRDGLGRWGCIVVLNVVMSLLTYRGLR 336
PLL L G + LPL WS+PEA+VTAELS+ FPEA+G VAWVS AFGP+WG+MEGY +W+SGV DNSLY VL LDY++ LL D+ + +GL R ++ ++++L RGL+
Sbjct: 122 PLLTLLGLVLLPLAWSIPEALVTAELSTAFPEASGFVAWVSAAFGPYWGFMEGYWSWLSGVADNSLYAVLILDYVLRLLDPDSPLM-EGLPRAAFLLATCALLTMLNLRGLQ 232
BLAST of mRNA_H-elongata_contig73112.14988.1 vs. uniprot
Match: A0A8J9WRS2_9CHLO (Polyamine transporter PUT1 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WRS2_9CHLO) HSP 1 Score: 132 bits (331), Expect = 7.270e-34 Identity = 62/111 (55.86%), Postives = 82/111 (73.87%), Query Frame = 1
Query: 1 PLLALAGFIFLPLVWSVPEAMVTAELSSTFPEAAGCVAWVSTAFGPFWGWMEGYCTWVSGVTDNSLYPVLFLDYLVSLLSEDNFIRRDGLGRWGCIVVLNVVMSLLTYRGL 333
PL+AL GF+ LP VWSVPEA+VTAEL++ FPE +G VAWV+ AFGPFWG+ EG+ +W+SGVTDNS+YPVLFL YL +++ G R C+ ++++S L YRGL
Sbjct: 77 PLVALLGFLILPFVWSVPEALVTAELATAFPEDSGYVAWVTAAFGPFWGFQEGWWSWLSGVTDNSVYPVLFLSYLDAVVPG----LLQGWARSACLFATSILLSYLNYRGL 183
BLAST of mRNA_H-elongata_contig73112.14988.1 vs. uniprot
Match: A0A2P6TDB3_CHLSO (Putative polyamine transporter isoform B n=2 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TDB3_CHLSO) HSP 1 Score: 132 bits (333), Expect = 1.150e-33 Identity = 63/111 (56.76%), Postives = 82/111 (73.87%), Query Frame = 1
Query: 1 PLLALAGFIFLPLVWSVPEAMVTAELSSTFPEAAGCVAWVSTAFGPFWGWMEGYCTWVSGVTDNSLYPVLFLDYLVSLLSEDNFIRRDGLGRWGCIVVLNVVMSLLTYRGL 333
PLLAL GF+ LPL+WSVPEA+VTAEL++TFPE +G VAWV+ AFGPFWG+ +G+ WVSGVTDN++YPVLFLDYL + + + G R ++ N ++ L YRGL
Sbjct: 139 PLLALLGFLLLPLIWSVPEALVTAELATTFPENSGYVAWVTAAFGPFWGFQKGFYAWVSGVTDNAVYPVLFLDYLQQVYP----VFQSGWPRMVFLIGFNAALTYLNYRGL 245
BLAST of mRNA_H-elongata_contig73112.14988.1 vs. uniprot
Match: A0A059LGR7_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LGR7_9CHLO) HSP 1 Score: 126 bits (317), Expect = 1.600e-33 Identity = 61/111 (54.95%), Postives = 81/111 (72.97%), Query Frame = 1
Query: 1 PLLALAGFIFLPLVWSVPEAMVTAELSSTFPEAAGCVAWVSTAFGPFWGWMEGYCTWVSGVTDNSLYPVLFLDYLVSLLSEDNFIRRDGLGRWGCIVVLNVVMSLLTYRGL 333
PLLA+ GF+ LPLVWSVPEA+VTAEL++ FPE AG VAWV+ AFGP WG+ EG+ +W+SGVTDN++YPV+ L Y+ L+S + G R ++ LN ++ L YRGL
Sbjct: 57 PLLAILGFLILPLVWSVPEALVTAELATAFPENAGYVAWVTAAFGPAWGFQEGFWSWLSGVTDNAVYPVMILTYVGELVS----LPTSGWPRVALLLALNAGLAYLNYRGL 163
BLAST of mRNA_H-elongata_contig73112.14988.1 vs. uniprot
Match: A0A7I4E6B8_PHYPA (Uncharacterized protein n=4 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4E6B8_PHYPA) HSP 1 Score: 130 bits (328), Expect = 1.990e-33 Identity = 57/111 (51.35%), Postives = 80/111 (72.07%), Query Frame = 1
Query: 1 PLLALAGFIFLPLVWSVPEAMVTAELSSTFPEAAGCVAWVSTAFGPFWGWMEGYCTWVSGVTDNSLYPVLFLDYLVSLLSEDNFIRRDGLGRWGCIVVLNVVMSLLTYRGL 333
PLLA+ GF+ P VWS+PEA++TAEL++ FPE G V W+S AFG FWG+ EG+C W+SGV DN+LYPVLFLDY ++ + DG R+ ++V+ ++++ L YRGL
Sbjct: 101 PLLAIVGFLVFPFVWSIPEALITAELATAFPENGGYVVWISAAFGEFWGFQEGWCKWISGVADNALYPVLFLDYFKRVVP----LFADGPARYIALIVITILLTYLNYRGL 207
BLAST of mRNA_H-elongata_contig73112.14988.1 vs. uniprot
Match: W9SCG8_9ROSA (Y+L amino acid transporter 2 n=1 Tax=Morus notabilis TaxID=981085 RepID=W9SCG8_9ROSA) HSP 1 Score: 130 bits (326), Expect = 2.050e-33 Identity = 58/111 (52.25%), Postives = 82/111 (73.87%), Query Frame = 1
Query: 1 PLLALAGFIFLPLVWSVPEAMVTAELSSTFPEAAGCVAWVSTAFGPFWGWMEGYCTWVSGVTDNSLYPVLFLDYLVSLLSEDNFIRRDGLGRWGCIVVLNVVMSLLTYRGL 333
PLLALAGF+ P+VWS+P A++TAE+ +TFPE +GC+ W+S+A GPFWG+ +G+ WVSGV DN+LYP+LFLDYL S + G+ R ++V VV++ ++YRGL
Sbjct: 56 PLLALAGFLVFPIVWSIPGALITAEMGTTFPENSGCIVWMSSALGPFWGFQQGWMKWVSGVIDNALYPILFLDYLKSAFP----VLGGGVPRIIAVLVFTVVLTYMSYRGL 162
BLAST of mRNA_H-elongata_contig73112.14988.1 vs. uniprot
Match: A0A0B0P988_GOSAR (Transporter protein n=23 Tax=Gossypium TaxID=3633 RepID=A0A0B0P988_GOSAR) HSP 1 Score: 129 bits (325), Expect = 3.090e-33 Identity = 61/111 (54.95%), Postives = 81/111 (72.97%), Query Frame = 1
Query: 1 PLLALAGFIFLPLVWSVPEAMVTAELSSTFPEAAGCVAWVSTAFGPFWGWMEGYCTWVSGVTDNSLYPVLFLDYLVSLLSEDNFIRRDGLGRWGCIVVLNVVMSLLTYRGL 333
PLLAL GF+ +P VWSVPEA++TAEL + FPE G V WVS+A GP+WG+ +G+ W+SGV DN+LYPVLFLDYL S + +GL R ++VL VV++ ++YRGL
Sbjct: 76 PLLALLGFLLVPFVWSVPEALITAELGTMFPENGGYVVWVSSALGPYWGFQQGWMKWLSGVIDNALYPVLFLDYLKSAIPA----LENGLPRTVAVLVLTVVLTYMSYRGL 182 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73112.14988.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig73112.14988.1 >prot_H-elongata_contig73112.14988.1 ID=prot_H-elongata_contig73112.14988.1|Name=mRNA_H-elongata_contig73112.14988.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp PLLALAGFIFLPLVWSVPEAMVTAELSSTFPEAAGCVAWVSTAFGPFWGWback to top mRNA from alignment at H-elongata_contig73112:745..1780+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig73112.14988.1 ID=mRNA_H-elongata_contig73112.14988.1|Name=mRNA_H-elongata_contig73112.14988.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1036bp|location=Sequence derived from alignment at H-elongata_contig73112:745..1780+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig73112:745..1780+ >mRNA_H-elongata_contig73112.14988.1 ID=mRNA_H-elongata_contig73112.14988.1|Name=mRNA_H-elongata_contig73112.14988.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig73112:745..1780+ (Himanthalia elongata Himel1 dioecious)back to top |