mRNA_H-elongata_contig73074.14986.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig73074.14986.1
Unique NamemRNA_H-elongata_contig73074.14986.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig73074.14986.1 vs. uniprot
Match: A0A6H5K9A7_9PHAE (Protein N-terminal glutamine amidohydrolase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9A7_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 1.230e-46
Identity = 69/90 (76.67%), Postives = 81/90 (90.00%), Query Frame = 1 
Query:    1 YTSHYCEENTLRLCNNFLGPAEAAGVELYVVFISNHLRQVPVWCQRLAERRDEPVLWDYHVLLLARHPRGNWIYDLDTTLPFPSQATMYM 270
            YTSHYCEEN+LRLCN+ LG AE+AGV+L VVF+SN  RQVPVW QRLA+RRDEPVLWDYHV+LLA+HP GNW+YDLD+TL FPS A++YM
Sbjct:   49 YTSHYCEENSLRLCNHLLGRAESAGVQLSVVFVSNAARQVPVWFQRLADRRDEPVLWDYHVILLAQHPHGNWVYDLDSTLDFPSPASLYM 138
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BLAST of mRNA_H-elongata_contig73074.14986.1 vs. uniprot
Match: D7G8M5_ECTSI (Protein N-terminal glutamine amidohydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8M5_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 1.660e-27
Identity = 47/60 (78.33%), Postives = 53/60 (88.33%), Query Frame = 1 
Query:    1 YTSHYCEENTLRLCNNFLGPAEAAGVELYVVFISNHLRQVPVWCQRLAERRDEPVLWDYH 180
            YTSHYCEEN+LRLCN+ LG AE+ GV+L VVF+SN  RQVPVW QRLA+RRDEPVLWDYH
Sbjct:   48 YTSHYCEENSLRLCNHLLGRAESDGVQLSVVFVSNAARQVPVWFQRLADRRDEPVLWDYH 107
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BLAST of mRNA_H-elongata_contig73074.14986.1 vs. uniprot
Match: UPI00106D458D (protein N-terminal glutamine amidohydrolase-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106D458D)

HSP 1 Score: 97.1 bits (240), Expect = 2.860e-23
Identity = 44/89 (49.44%), Postives = 57/89 (64.04%), Query Frame = 1 
Query:    1 YTSHYCEENTLRLCNNFLGPAEAAGVELYVVFISNHLRQVPVWCQRLAERRDEPVLWDYHVLLLARHPRGNWIYDLDTTLPFPSQATMY 267
            YTS +CEEN  +LC +F         E YVVFISN  +Q+P+WCQR +E   +PV+WDYHV+LL +     ++YDLDTTL FP     Y
Sbjct:   12 YTSCFCEENVWKLCESFKEKLRLC--EFYVVFISNPSKQIPLWCQRSSEINSQPVVWDYHVILLHKRTTDAYVYDLDTTLDFPCNLKEY 98
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BLAST of mRNA_H-elongata_contig73074.14986.1 vs. uniprot
Match: A0A6P3VJN1_CLUHA (Protein N-terminal glutamine amidohydrolase n=1 Tax=Clupea harengus TaxID=7950 RepID=A0A6P3VJN1_CLUHA)

HSP 1 Score: 97.1 bits (240), Expect = 5.270e-23
Identity = 45/89 (50.56%), Postives = 59/89 (66.29%), Query Frame = 1 
Query:    1 YTSHYCEENTLRLCNNFLGPAEAAGVELYVVFISNHLRQVPVWCQRLAERRDEPVLWDYHVLLLARHPRGNWIYDLDTTLPFPSQATMY 267
            YTS YCEEN  +LC       +    ++Y VFISN  R VP+W Q+   RRD+PV+WDYHV+LL    R +++YDLDTTLPFP   ++Y
Sbjct:   22 YTSCYCEENIWKLCEYIKAQPQHCIQDVYAVFISNERRMVPLWKQKSC-RRDQPVVWDYHVILLHTGNRESYVYDLDTTLPFPCPLSLY 109
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BLAST of mRNA_H-elongata_contig73074.14986.1 vs. uniprot
Match: A0A8J4XFI0_CLAMG (Protein N-terminal glutamine amidohydrolase n=1 Tax=Clarias magur TaxID=1594786 RepID=A0A8J4XFI0_CLAMG)

HSP 1 Score: 94.7 bits (234), Expect = 5.420e-23
Identity = 44/90 (48.89%), Postives = 61/90 (67.78%), Query Frame = 1 
Query:    1 YTSHYCEENTLRLCNNFLGPAEAAGVELYVVFISNHLRQVPVWCQRLAERRDEPVLWDYHVLLLARHPRG-NWIYDLDTTLPFPSQATMY 267
            YTS YCEEN  +LC +       +  E+Y VFISN  + +P+W Q+ + R  EPV+WDYHV+LL  +P+  +++YDLDTTLPFP  A +Y
Sbjct:   22 YTSCYCEENVWKLCEHIQSQGTCSLDEVYAVFISNENKSIPIWRQK-SSRGSEPVIWDYHVVLLHFNPQAQSFVYDLDTTLPFPCPADVY 110
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BLAST of mRNA_H-elongata_contig73074.14986.1 vs. uniprot
Match: A0A6P7K340_9TELE (Protein N-terminal glutamine amidohydrolase n=1 Tax=Parambassis ranga TaxID=210632 RepID=A0A6P7K340_9TELE)

HSP 1 Score: 96.3 bits (238), Expect = 9.400e-23
Identity = 49/90 (54.44%), Postives = 60/90 (66.67%), Query Frame = 1 
Query:    1 YTSHYCEENTLRLCNNFLGPAEAAGVELYVVFISNHLRQVPVWCQRLAERRDEPVLWDYHVLLL-ARHPRGNWIYDLDTTLPFPSQATMY 267
            YTS YCEEN  +LC        AA  +L+VVFISN  R VP+W Q+ + RRD+PV+WDYHV+LL ARHP    IYDLD+ L FP    +Y
Sbjct:   16 YTSCYCEENVWKLCEFIRAERAAALEQLFVVFISNQNRTVPLWKQK-SGRRDQPVIWDYHVILLQARHPSDALIYDLDSELSFPCTLKLY 104
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BLAST of mRNA_H-elongata_contig73074.14986.1 vs. uniprot
Match: UPI000539B678 (protein N-terminal glutamine amidohydrolase-like n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI000539B678)

HSP 1 Score: 94.4 bits (233), Expect = 1.850e-22
Identity = 46/96 (47.92%), Postives = 62/96 (64.58%), Query Frame = 1 
Query:    1 YTSHYCEENTLRLCNNFL--GPAEAAGVELYVVFISNHLRQVPVWCQRLAERRDEPVLWDYHVLLLARHPRGN---WIYDLDTTLPFPSQATMYMA 273
            +T +YCEEN   LC      G A+A G +L+VVFISN  +QVP+W Q+ + R D  VLWDYHV+ + R    +    ++DLD+TLPFPS  T Y+A
Sbjct:   18 HTPYYCEENVYLLCKTLCENGVADATGSDLFVVFISNEKKQVPLWHQKASRRADGIVLWDYHVICVQRKKESDSEPLVWDLDSTLPFPSPLTSYVA 113
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BLAST of mRNA_H-elongata_contig73074.14986.1 vs. uniprot
Match: UPI0015ACDBEB (protein N-terminal glutamine amidohydrolase isoform X1 n=3 Tax=Anguilla anguilla TaxID=7936 RepID=UPI0015ACDBEB)

HSP 1 Score: 94.7 bits (234), Expect = 2.990e-22
Identity = 45/91 (49.45%), Postives = 61/91 (67.03%), Query Frame = 1 
Query:    1 YTSHYCEENTLRLCNNFLGPAEAAGVELYVVFISNHLRQVPVWCQRLAERRDEPVLWDYHVLLLARHP-RGNWIYDLDTTLPFPSQATMYM 270
            YTS YCEEN  +LC +     E     +Y VFISN  R +P+W Q+ + R ++PV+WDYHV+LL + P   ++IYDLDTTLPFP Q  +Y+
Sbjct:   27 YTSCYCEENVWKLCEHVKIQNEGTFDHIYAVFISNERRMIPIWRQK-SSRGNQPVIWDYHVILLHKSPTEQSFIYDLDTTLPFPCQFDVYV 116
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BLAST of mRNA_H-elongata_contig73074.14986.1 vs. uniprot
Match: B9SUD9_RICCO (Protein N-terminal glutamine amidohydrolase n=1 Tax=Ricinus communis TaxID=3988 RepID=B9SUD9_RICCO)

HSP 1 Score: 93.6 bits (231), Expect = 1.070e-21
Identity = 43/95 (45.26%), Postives = 64/95 (67.37%), Query Frame = 1 
Query:    1 YTSHYCEENTL----RLCNNFLGPAEAAGVELYVVFISNHLRQVPVWCQRLAERRDEPVLWDYHVLLLARHPRGNWIYDLDTTLPFPSQATMYMA 273
            +T  YCEEN      +LC N  G A+A G +L+V FISN  +QVP+W Q+ ++R D  +LWDYHV+ + R   G+ ++DLD++LPFPS   +Y++
Sbjct:   18 HTPFYCEENVYFVCKKLCQN--GMADAEGSDLFVAFISNEKKQVPLWHQKASKRADGVILWDYHVICIQRKRDGHLVWDLDSSLPFPSPLALYVS 110
[Close]
BLAST of mRNA_H-elongata_contig73074.14986.1 vs. uniprot
Match: V4SCG6_CITCL (Protein N-terminal glutamine amidohydrolase n=1 Tax=Citrus clementina TaxID=85681 RepID=V4SCG6_CITCL)

HSP 1 Score: 92.4 bits (228), Expect = 1.530e-21
Identity = 44/96 (45.83%), Postives = 63/96 (65.62%), Query Frame = 1 
Query:    1 YTSHYCEENTLRLCNNFL--GPAEAAGVELYVVFISNHLRQVPVWCQRLAERRDEPVLWDYHVLLLARHPRGN---WIYDLDTTLPFPSQATMYMA 273
            +T +YCEEN   LC      G AEA G +L+VVFISN  +Q+P+W Q+ ++R D  VLWDYHV+ + R   G+    ++DLD++LPFPS    Y++
Sbjct:   14 HTPYYCEENVYLLCKKLCANGTAEADGSDLFVVFISNEKKQIPLWHQKASQRADGVVLWDYHVICVQRKKGGDSPCLVWDLDSSLPFPSPLAPYVS 109
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73074.14986.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K9A7_9PHAE1.230e-4676.67Protein N-terminal glutamine amidohydrolase n=1 Ta... [more]
D7G8M5_ECTSI1.660e-2778.33Protein N-terminal glutamine amidohydrolase n=1 Ta... [more]
UPI00106D458D2.860e-2349.44protein N-terminal glutamine amidohydrolase-like n... [more]
A0A6P3VJN1_CLUHA5.270e-2350.56Protein N-terminal glutamine amidohydrolase n=1 Ta... [more]
A0A8J4XFI0_CLAMG5.420e-2348.89Protein N-terminal glutamine amidohydrolase n=1 Ta... [more]
A0A6P7K340_9TELE9.400e-2354.44Protein N-terminal glutamine amidohydrolase n=1 Ta... [more]
UPI000539B6781.850e-2247.92protein N-terminal glutamine amidohydrolase-like n... [more]
UPI0015ACDBEB2.990e-2249.45protein N-terminal glutamine amidohydrolase isofor... [more]
B9SUD9_RICCO1.070e-2145.26Protein N-terminal glutamine amidohydrolase n=1 Ta... [more]
V4SCG6_CITCL1.530e-2145.83Protein N-terminal glutamine amidohydrolase n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73074contigH-elongata_contig73074:190..849 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.8
Seed ortholog evalue2.6e-21
Seed eggNOG ortholog2880.D7G8M5
Preferred nameWDYHV1
KEGG rclassRC00010,RC00055,RC00523
KEGG koko:K01866,ko:K21286
KEGG ReactionR02918,R11560
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
GOsGO:0003008,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006464,GO:0006807,GO:0007610,GO:0007611,GO:0007612,GO:0007635,GO:0008150,GO:0008152,GO:0008306,GO:0008355,GO:0009056,GO:0009057,GO:0009987,GO:0016787,GO:0016810,GO:0016811,GO:0019538,GO:0030163,GO:0032501,GO:0036211,GO:0042048,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0050877,GO:0050890,GO:0050896,GO:0070773,GO:0071704,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides
EggNOG OGsKOG3261@1,KOG3261@2759
EC3.5.1.122,6.1.1.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029
Hectar predicted targeting categoryother localisation
Exons2
Model size273
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931132.5679212-CDS-H-elongata_contig73074:189..2811622931132.5679212-CDS-H-elongata_contig73074:189..281Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73074 190..281 -
1691679711.614016-CDS-H-elongata_contig73074:189..2811691679711.614016-CDS-H-elongata_contig73074:189..281Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73074 190..281 -
1622931132.585446-CDS-H-elongata_contig73074:668..8491622931132.585446-CDS-H-elongata_contig73074:668..849Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73074 669..849 -
1691679711.629216-CDS-H-elongata_contig73074:668..8491691679711.629216-CDS-H-elongata_contig73074:668..849Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73074 669..849 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73074.14986.1prot_H-elongata_contig73074.14986.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig73074 190..849 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig73074.14986.1

>prot_H-elongata_contig73074.14986.1 ID=prot_H-elongata_contig73074.14986.1|Name=mRNA_H-elongata_contig73074.14986.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
YTSHYCEENTLRLCNNFLGPAEAAGVELYVVFISNHLRQVPVWCQRLAER
RDEPVLWDYHVLLLARHPRGNWIYDLDTTLPFPSQATMYMA
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mRNA from alignment at H-elongata_contig73074:190..849-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig73074.14986.1 ID=mRNA_H-elongata_contig73074.14986.1|Name=mRNA_H-elongata_contig73074.14986.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=660bp|location=Sequence derived from alignment at H-elongata_contig73074:190..849- (Himanthalia elongata Himel1 dioecious)
TACACCTCACACTACTGCGAGGAGAATACGCTGCGATTGTGCAATAATTT
CCTTGGCCCCGCAGAAGCCGCCGGCGTCGAGCTGTACGTCGTATTCATCT
CCAACCACTTGCGCCAAGTTCCCGTATGGTGTCAACGTCTCGCCGAAAGA
CGGGATGAGCCCGTGCTTTGGGACTACCATGGTGAGCTGCTAATTTTATT
GGAGAGATGCGCGCATCCGACTCGATAATTTCAGTTCATCAAGTTGACCC
AGAGGGAACGAGCACATCAAATTTGAGACAGTACCTGTTTAGATCTTGGC
CGCCTAATTGCGCCTGCGCTCCACACAACAAGCAGACAACTGTGTACCGA
GGTCGATGATAAGACGACTTCCTGCTTGCCCAGGTTAGCAGTCACCTCGT
TTTCACGAAAAGTAACTGTTTCTTGACCTCTTCGTTCGCGTTCATGTTTT
TTTTTGTGAATATCGTCCTTTTTTAGTCTTGGTGACCTTACCATCAAGTT
ACAAACTCTAATATTTCCGCGACGATACTGTCCCACGCCCGCCCTTTCTT
ATTGTCGATGTCCGTTAGTCCTTCTGCTGGCGAGACATCCAAGAGGCAAC
TGGATTTATGACCTAGATACGACGCTGCCGTTTCCAAGCCAGGCCACGAT
GTACATGGCC
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Coding sequence (CDS) from alignment at H-elongata_contig73074:190..849-

>mRNA_H-elongata_contig73074.14986.1 ID=mRNA_H-elongata_contig73074.14986.1|Name=mRNA_H-elongata_contig73074.14986.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig73074:190..849- (Himanthalia elongata Himel1 dioecious)
TACACCTCACACTACTGCGAGGAGAATACGCTGCGATTGTGCAATAATTT
CCTTGGCCCCGCAGAAGCCGCCGGCGTCGAGCTGTACGTCGTATTCATCT
CCAACCACTTGCGCCAAGTTCCCGTATGGTGTCAACGTCTCGCCGAAAGA
CGGGATGAGCCCGTGCTTTGGGACTACCATGTACACCTCACACTACTGCG
AGGAGAATACGCTGCGATTGTGCAATAATTTCCTTGGCCCCGCAGAAGCC
GCCGGCGTCGAGCTGTACGTCGTATTCATCTCCAACCACTTGCGCCAAGT
TCCCGTATGGTGTCAACGTCTCGCCGAAAGACGGGATGAGCCCGTGCTTT
GGGACTACCATGTCCTTCTGCTGGCGAGACATCCAAGAGGCAACTGGATT
TATGACCTAGATACGACGCTGCCGTTTCCAAGCCAGGCCACGATGTACAT
GGCCTCCTTCTGCTGGCGAGACATCCAAGAGGCAACTGGATTTATGACCT
AGATACGACGCTGCCGTTTCCAAGCCAGGCCACGATGTACATGGCC
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