mRNA_H-elongata_contig7306.14983.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7306.14983.1
Unique NamemRNA_H-elongata_contig7306.14983.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig7306.14983.1 vs. uniprot
Match: D7G6P6_ECTSI (tRNA (adenine(58)-N(1))-methyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6P6_ECTSI)

HSP 1 Score: 201 bits (511), Expect = 1.710e-60
Identity = 98/117 (83.76%), Postives = 103/117 (88.03%), Query Frame = 1 
Query:    1 EGAPAPAIRLGDTVIFFEGREAIGFDRMKHKTIWQCRHGAFHHDDIIGKPFGCRVFSRTTKGHVYALSPTPELWCQVVPSRTQI--DSDQSIVIFRLDLKPGDVVVESGTGSGVMST 345
            E + AP IR GD V+FFEGRE IGFDRMK KTIWQCRHGAFHHD+IIGKPFG RVFSRTTKG+VYALSPTPELW  VVP+RTQI  D DQSIVIFRLDLKPGD VVESGTGSGVMST
Sbjct:   20 EASTAPLIRNGDMVVFFEGREPIGFDRMKAKTIWQCRHGAFHHDEIIGKPFGSRVFSRTTKGYVYALSPTPELWSHVVPNRTQIVQDFDQSIVIFRLDLKPGDTVVESGTGSGVMST 136
[Close]
BLAST of mRNA_H-elongata_contig7306.14983.1 vs. uniprot
Match: A0A397CZF8_9STRA (tRNA (adenine(58)-N(1))-methyltransferase n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397CZF8_9STRA)

HSP 1 Score: 114 bits (286), Expect = 4.790e-30
Identity = 54/110 (49.09%), Postives = 74/110 (67.27%), Query Frame = 1 
Query:   22 IRLGDTVIFFEGREAIGFDRMKHKTIWQCRHGAFHHDDIIGKPFGCRVFSRTTKGHVYALSPTPELWCQVVPSRTQI--DSDQSIVIFRLDLKPGDVVVESGTGSGVMST 345
            +  GD VI FE   +I +  +K   I+Q RHGAFHH+DIIG  +G +V+SR +KG++Y LSPTPELW + +  RTQI    D S + F+    PG +V+ESGTGSG ++T
Sbjct:   28 VEAGDLVILFETHNSITYAYVKPDEIYQNRHGAFHHNDIIGNRYGAKVYSRMSKGYIYILSPTPELWSKALRHRTQIVFTLDASAITFQTHCAPGKIVIESGTGSGALTT 137
[Close]
BLAST of mRNA_H-elongata_contig7306.14983.1 vs. uniprot
Match: A0A418ATI8_9STRA (tRNA (adenine(58)-N(1))-methyltransferase n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418ATI8_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.670e-29
Identity = 55/110 (50.00%), Postives = 75/110 (68.18%), Query Frame = 1 
Query:   22 IRLGDTVIFFEGREAIGFDRMKHKTIWQCRHGAFHHDDIIGKPFGCRVFSRTTKGHVYALSPTPELWCQVVPSRTQI--DSDQSIVIFRLDLKPGDVVVESGTGSGVMST 345
            +  GD VI FE   +I +  +K   I+Q RHGAFHH+DIIG  +G +V+SR +KG++Y LSPTPELW + +  RTQI    D S +IF+    PG +V+ESGTGSG ++T
Sbjct:   29 VEAGDLVILFETHNSITYTYVKPDEIYQNRHGAFHHNDIIGNRYGAKVYSRISKGYMYVLSPTPELWSKALRHRTQIVFTLDASSIIFQTHCAPGKIVIESGTGSGALTT 138
[Close]
BLAST of mRNA_H-elongata_contig7306.14983.1 vs. uniprot
Match: A0A6G0XQT4_9STRA (tRNA (adenine(58)-N(1))-methyltransferase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XQT4_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.900e-29
Identity = 55/110 (50.00%), Postives = 75/110 (68.18%), Query Frame = 1 
Query:   22 IRLGDTVIFFEGREAIGFDRMKHKTIWQCRHGAFHHDDIIGKPFGCRVFSRTTKGHVYALSPTPELWCQVVPSRTQI--DSDQSIVIFRLDLKPGDVVVESGTGSGVMST 345
            +  GD VI FE   +I +  MK   I+Q RHGAFHH+D+IG  +G +V+SR +KG++Y LSPTPELW + +  RTQI    D S +IF+    PG +V+ESGTGSG ++T
Sbjct:   16 VEEGDLVILFETHNSITYAYMKRDEIYQNRHGAFHHNDMIGHKYGTKVYSRMSKGYIYILSPTPELWSKALRHRTQIVFTLDASAIIFQTHCAPGKIVIESGTGSGALTT 125
[Close]
BLAST of mRNA_H-elongata_contig7306.14983.1 vs. uniprot
Match: A0A024TN05_9STRA (tRNA (adenine(58)-N(1))-methyltransferase n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TN05_9STRA)

HSP 1 Score: 116 bits (290), Expect = 3.230e-29
Identity = 55/110 (50.00%), Postives = 75/110 (68.18%), Query Frame = 1 
Query:   22 IRLGDTVIFFEGREAIGFDRMKHKTIWQCRHGAFHHDDIIGKPFGCRVFSRTTKGHVYALSPTPELWCQVVPSRTQI--DSDQSIVIFRLDLKPGDVVVESGTGSGVMST 345
            +  GD VI FE   +I +  +K   I+Q RHGAFHH+DIIG  +G +V+SR +KG++Y LSPTPELW + +  RTQI    D S +IF+    PG +V+ESGTGSG ++T
Sbjct:   29 VEAGDLVILFETHNSITYTYVKPDEIYQNRHGAFHHNDIIGNRYGAKVYSRISKGYMYVLSPTPELWSKALRHRTQIVFTLDASSIIFQTHCAPGKIVIESGTGSGALTT 138
[Close]
BLAST of mRNA_H-elongata_contig7306.14983.1 vs. uniprot
Match: A0A485LAM3_9STRA (tRNA (adenine(58)-N(1))-methyltransferase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LAM3_9STRA)

HSP 1 Score: 115 bits (289), Expect = 5.180e-29
Identity = 55/110 (50.00%), Postives = 75/110 (68.18%), Query Frame = 1 
Query:   22 IRLGDTVIFFEGREAIGFDRMKHKTIWQCRHGAFHHDDIIGKPFGCRVFSRTTKGHVYALSPTPELWCQVVPSRTQI--DSDQSIVIFRLDLKPGDVVVESGTGSGVMST 345
            +  GD VI FE   +I +  MK   I+Q RHGAFHH+D+IG  +G +V+SR +KG++Y LSPTPELW + +  RTQI    D S +IF+    PG +V+ESGTGSG ++T
Sbjct:   29 VEAGDLVILFETHNSITYAYMKPDEIYQNRHGAFHHNDMIGHRYGTKVYSRMSKGYIYILSPTPELWSKALRHRTQIVFTLDASSIIFQTHCAPGKIVIESGTGSGALTT 138
[Close]
BLAST of mRNA_H-elongata_contig7306.14983.1 vs. uniprot
Match: A0A1V9Z9G2_9STRA (tRNA (adenine(58)-N(1))-methyltransferase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z9G2_9STRA)

HSP 1 Score: 115 bits (288), Expect = 7.820e-29
Identity = 53/115 (46.09%), Postives = 77/115 (66.96%), Query Frame = 1 
Query:    7 APAPAIRLGDTVIFFEGREAIGFDRMKHKTIWQCRHGAFHHDDIIGKPFGCRVFSRTTKGHVYALSPTPELWCQVVPSRTQI--DSDQSIVIFRLDLKPGDVVVESGTGSGVMST 345
            A  P + +GD VI +E   ++ +  M+   ++Q RHGAFHH+D+IG  +G +V+SR +KG++Y LSPTPELW + +  RTQI    D S ++F     PG +VVESGTGSG ++T
Sbjct:   26 AGKPIVEVGDLVILYETHNSVTYAFMEKDAVYQNRHGAFHHNDMIGHRYGTKVYSRMSKGYIYILSPTPELWSKALRHRTQIVFTLDASAILFNTHCGPGKIVVESGTGSGALTT 140
[Close]
BLAST of mRNA_H-elongata_contig7306.14983.1 vs. uniprot
Match: W4FYX8_9STRA (tRNA (adenine(58)-N(1))-methyltransferase n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FYX8_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.870e-28
Identity = 53/110 (48.18%), Postives = 74/110 (67.27%), Query Frame = 1 
Query:   22 IRLGDTVIFFEGREAIGFDRMKHKTIWQCRHGAFHHDDIIGKPFGCRVFSRTTKGHVYALSPTPELWCQVVPSRTQI--DSDQSIVIFRLDLKPGDVVVESGTGSGVMST 345
            +  GD V+ FE   +I +  +K   I+Q RHGAFHH+DIIG  +G +V+SR +KG++Y LSPTPELW + +  RTQI    D S + F+    PG +V+ESGTGSG ++T
Sbjct:   28 VEAGDLVVLFETHNSITYAYVKPDEIYQNRHGAFHHNDIIGNRYGAKVYSRMSKGYIYILSPTPELWSKALRHRTQIVFTLDASAITFQTHCAPGKIVIESGTGSGALTT 137
[Close]
BLAST of mRNA_H-elongata_contig7306.14983.1 vs. uniprot
Match: B7FTZ8_PHATC (tRNA (adenine(58)-N(1))-methyltransferase (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FTZ8_PHATC)

HSP 1 Score: 112 bits (279), Expect = 2.880e-28
Identity = 59/111 (53.15%), Postives = 74/111 (66.67%), Query Frame = 1 
Query:   22 IRLGDTVIFFEGREAIGFDRMKHKTIWQCRHGAFHHDDIIGKPFGCRVFSRTTKGH--VYALSPTPELWCQVVPSRTQI--DSDQSIVIFRLDLKPGDVVVESGTGSGVMS 342
            IR GD V+  E  + + F   K   I+  R+G FHH+D IGKPFGC++ SR+ +G+  VY L PTPELW + +  RTQI  + DQS VIF+L LKP   VVESGTGSG MS
Sbjct:    1 IRTGDLVVIMESFDNLAFVYAKEGEIFSNRNGNFHHNDFIGKPFGCKIRSRSHRGYGFVYLLKPTPELWARSLNHRTQIVHELDQSQVIFQLHLKPNMTVVESGTGSGAMS 111
[Close]
BLAST of mRNA_H-elongata_contig7306.14983.1 vs. uniprot
Match: A0A835ZH22_9STRA (tRNA (adenine(58)-N(1))-methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH22_9STRA)

HSP 1 Score: 110 bits (274), Expect = 2.330e-26
Identity = 52/72 (72.22%), Postives = 61/72 (84.72%), Query Frame = 1 
Query:  136 IIGKPFGCRVFSRTTKGHVYALSPTPELWCQVVPSRTQI--DSDQSIVIFRLDLKPGDVVVESGTGSGVMST 345
            +IG+P+G +VFSR+TKG +Y LSPTPELW  VVP+RTQI   SDQS VIFRLD+KPGD V+ESGTGSG MST
Sbjct:    1 MIGQPYGSKVFSRSTKGFIYVLSPTPELWSTVVPNRTQIVQPSDQSFVIFRLDMKPGDTVIESGTGSGAMST 72
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7306.14983.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6P6_ECTSI1.710e-6083.76tRNA (adenine(58)-N(1))-methyltransferase n=2 Tax=... [more]
A0A397CZF8_9STRA4.790e-3049.09tRNA (adenine(58)-N(1))-methyltransferase n=3 Tax=... [more]
A0A418ATI8_9STRA1.670e-2950.00tRNA (adenine(58)-N(1))-methyltransferase n=1 Tax=... [more]
A0A6G0XQT4_9STRA1.900e-2950.00tRNA (adenine(58)-N(1))-methyltransferase n=1 Tax=... [more]
A0A024TN05_9STRA3.230e-2950.00tRNA (adenine(58)-N(1))-methyltransferase n=1 Tax=... [more]
A0A485LAM3_9STRA5.180e-2950.00tRNA (adenine(58)-N(1))-methyltransferase n=1 Tax=... [more]
A0A1V9Z9G2_9STRA7.820e-2946.09tRNA (adenine(58)-N(1))-methyltransferase n=1 Tax=... [more]
W4FYX8_9STRA1.870e-2848.18tRNA (adenine(58)-N(1))-methyltransferase n=1 Tax=... [more]
B7FTZ8_PHATC2.880e-2853.15tRNA (adenine(58)-N(1))-methyltransferase (Fragmen... [more]
A0A835ZH22_9STRA2.330e-2672.22tRNA (adenine(58)-N(1))-methyltransferase n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7306contigH-elongata_contig7306:8856..10156 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score201.1
Seed ortholog evalue2.9e-49
Seed eggNOG ortholog2880.D7G6P6
Preferred nameTRMT61A
KEGG koko:K07442
GOsGO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008174,GO:0008175,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016426,GO:0016429,GO:0016556,GO:0016740,GO:0016741,GO:0030488,GO:0031515,GO:0031974,GO:0031981,GO:0032259,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0034708,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0043527,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0061953,GO:0070013,GO:0071704,GO:0080009,GO:0090304,GO:0140098,GO:0140101,GO:1901360,GO:1902494,GO:1990234
EggNOG free text desc.tRNA (adenine-N1-)-methyltransferase activity
EggNOG OGsCOG2519@1,KOG2915@2759
EC2.1.1.219,2.1.1.220
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-26_000130.1
Exons3
Model size345
Cds size345
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7306.14983.1prot_H-elongata_contig7306.14983.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7306 8856..10156 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931132.224467-CDS-H-elongata_contig7306:8855..90171622931132.224467-CDS-H-elongata_contig7306:8855..9017Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7306 8856..9017 +
1691679711.4554663-CDS-H-elongata_contig7306:8855..90171691679711.4554663-CDS-H-elongata_contig7306:8855..9017Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7306 8856..9017 +
1622931132.2411766-CDS-H-elongata_contig7306:9638..97281622931132.2411766-CDS-H-elongata_contig7306:9638..9728Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7306 9639..9728 +
1691679711.4702802-CDS-H-elongata_contig7306:9638..97281691679711.4702802-CDS-H-elongata_contig7306:9638..9728Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7306 9639..9728 +
1622931132.256137-CDS-H-elongata_contig7306:10063..101561622931132.256137-CDS-H-elongata_contig7306:10063..10156Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7306 10064..10156 +
1691679711.4813678-CDS-H-elongata_contig7306:10063..101561691679711.4813678-CDS-H-elongata_contig7306:10063..10156Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7306 10064..10156 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7306.14983.1

>prot_H-elongata_contig7306.14983.1 ID=prot_H-elongata_contig7306.14983.1|Name=mRNA_H-elongata_contig7306.14983.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
EGAPAPAIRLGDTVIFFEGREAIGFDRMKHKTIWQCRHGAFHHDDIIGKP
FGCRVFSRTTKGHVYALSPTPELWCQVVPSRTQIDSDQSIVIFRLDLKPG
DVVVESGTGSGVMST
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mRNA from alignment at H-elongata_contig7306:8856..10156+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7306.14983.1 ID=mRNA_H-elongata_contig7306.14983.1|Name=mRNA_H-elongata_contig7306.14983.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1301bp|location=Sequence derived from alignment at H-elongata_contig7306:8856..10156+ (Himanthalia elongata Himel1 dioecious)
GAGGGGGCACCCGCACCAGCGATTCGATTGGGAGACACAGTTATCTTCTT
CGAGGGCCGTGAGGCGATAGGTTTCGATCGGATGAAGCACAAGACGATTT
GGCAATGCCGTCATGGGGCGTTCCACCACGATGACATAATTGGCAAGCCT
TTCGGCTGCAGGGTAAGCTATAGTCGGTGCTACTTCTTTTATAAGAAGCC
GTTAAAGAGTAAACTGTGAATGGGTAGGCTGTGCAAAGGTAAGCTTTGCA
TGGCGGGTAGAGCTGTACTTATGCGCGTCGTTAGAGCAACCACGTACTGC
CTGTTGAGCCACGTTTTGCATCTCGGTGTTGGAGATGAGTTGCTTGGATT
AAGGTTTGGGTTAGGGTGGCGATGACCCTCACCTTAAGGTATGACATTCG
CGCAAATCGCCCTCGGAAGGGTCGTCGAGTTAGGGTTAGGGTTAGGGTTA
GTTTTGAAGCTTTTGCCCAAGCGGGTTATTCTAACCCTAACCCTAACTCT
AGTTGTCCAAGGGTTAGGGTTAGGGTTAGGGTCTAGTAATAGTCATAGTA
ATAATAATAGTAATAATAATACTAATCATAATCATAATCATAATAGTCAT
CATCATAACAGTACTAGTAATAGTCATAGTAATAGTAATAATAATAATTA
ATAATAATAATAATAAATAATAATAATAGTATAATACTCATCATAACAGT
AATAATACTAATAAAATAAATAATAATAATGATAATAATAATAATGAGCA
TAATTATAATAGTCTGATAATAATCACCATCAGGTGTTTTCGAGGACGAC
GAAAGGTCACGTATATGCACTGTCTCCGACACCGGAGCTTTGGTGCCAAG
TCGTGCCCAGTCGGACGCAAATTGTACAGGCAAGCTCAAGGTCCAGCGGG
GCCGGTATCTTGAGTTATTAAAATGATTTCATATTTAATAGAGAACATAT
TTATTATTATTATTTTATTTTTGCAGAACTGTCAATAGATTTAGACTACC
GTACTAGTACTAGTAATAGGCACCGAATAACTTATCCGGACCCTAACCCT
AATACTAACCCTAACCCTAACCCTAACCTTAACCCTAACCCTAGACTACC
GTACTAGTACTAGTAATAGGCACCGAATAACTTATCCGGACCCTAACCCT
AACCCTAACCCTAACCCTATTATATTCTTCGGTTCATCTTTGCTGCTGTC
GGCTTCAGGATTCCGATCAGAGTATCGTGATCTTCCGCCTAGATCTCAAG
CCGGGGGACGTGGTAGTGGAGTCGGGGACAGGCAGCGGAGTCATGTCGAC
G
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Coding sequence (CDS) from alignment at H-elongata_contig7306:8856..10156+

>mRNA_H-elongata_contig7306.14983.1 ID=mRNA_H-elongata_contig7306.14983.1|Name=mRNA_H-elongata_contig7306.14983.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig7306:8856..10156+ (Himanthalia elongata Himel1 dioecious)
GAGGGGGCACCCGCACCAGCGATTCGATTGGGAGACACAGTTATCTTCTT
CGAGGGCCGTGAGGCGATAGGTTTCGATCGGATGAAGCACAAGACGATTT
GGCAATGCCGTCATGGGGCGTTCCACCACGATGACATAATTGGCAAGCCT
TTCGGCTGCAGGGAGGGGGCACCCGCACCAGCGATTCGATTGGGAGACAC
AGTTATCTTCTTCGAGGGCCGTGAGGCGATAGGTTTCGATCGGATGAAGC
ACAAGACGATTTGGCAATGCCGTCATGGGGCGTTCCACCACGATGACATA
ATTGGCAAGCCTTTCGGCTGCAGGGTGTTTTCGAGGACGACGAAAGGTCA
CGTATATGCACTGTCTCCGACACCGGAGCTTTGGTGCCAAGTCGTGCCCA
GTCGGACGCAAATTGTGTTTTCGAGGACGACGAAAGGTCACGTATATGCA
CTGTCTCCGACACCGGAGCTTTGGTGCCAAGTCGTGCCCAGTCGGACGCA
AATTGATTCCGATCAGAGTATCGTGATCTTCCGCCTAGATCTCAAGCCGG
GGGACGTGGTAGTGGAGTCGGGGACAGGCAGCGGAGTCATGTCGACGGAT
TCCGATCAGAGTATCGTGATCTTCCGCCTAGATCTCAAGCCGGGGGACGT
GGTAGTGGAGTCGGGGACAGGCAGCGGAGTCATGTCGACG
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