mRNA_H-elongata_contig73041.14982.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig73041.14982.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI) HSP 1 Score: 272 bits (696), Expect = 1.960e-82 Identity = 128/215 (59.53%), Postives = 161/215 (74.88%), Query Frame = 2
Query: 212 PDLEDGGCGTMTDPYQSCVECYGWTPKGPIYILDDNDGIMYSPTSVTGKWRLTSHLFVLRGSIFYCRGTSIGGDCDELRIQSTSSTNYNELRGHGGSLYFEDTLVTSWHTLNKTPQ----DGRSFINCVSEYKSDETCEDQSKHNYGECRMDIIDSEMGYLGWSDSDSYGLTWKARGFCADKNNPEVFDTTNVYGGITNSDIHHMYYDMYSYGYQ 844
PD E GC T+TD Y +E G + KGPI+ LDD+ + +P ++ KW LT+ L + G++FYCRG+SIGGDCDELRIQST T+++E+R HGGS+YFE T+VTSW T NKTPQ GRSF+NCVSE + E C Q+++ GECRMDII+SE+GYLG+ DS+SYGLTWK RGFC D +NP+VFDTTNVYG + SDIHH YY YSYG+Q
Sbjct: 80 PDAEGEGCFTITDLYNFRLESDG-SAKGPIFNLDDSYNTVLNPKVLSNKWLLTAELHITGGAVFYCRGSSIGGDCDELRIQSTGPTDFHEVRAHGGSMYFESTIVTSWDTPNKTPQATYVGGRSFLNCVSEKLTGEVCVGQAQNEMGECRMDIINSEIGYLGYFDSESYGLTWKVRGFCKDLSNPDVFDTTNVYGNLIGSDIHHNYYGQYSYGHQ 293
BLAST of mRNA_H-elongata_contig73041.14982.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE) HSP 1 Score: 264 bits (675), Expect = 5.450e-80 Identity = 131/241 (54.36%), Postives = 165/241 (68.46%), Query Frame = 2
Query: 197 SFVVDPDLEDGGCGTMTDPYQSCVECYGWTPKGPIYILDDNDGIMYSPTSVTGKWRLTSHLFVLRGSIFYCRGTSIGGDCDELRIQSTSSTNYNELRGHGGSLYFEDTLVTSWHTLNKTPQD----GRSFINCVSEYKSDETCEDQSKHNYGECRMDIIDSEMGYLGWSDSDSYGLTWKAR---------GFCADKNNPEVFDTTNVYGGITNSDIHHMYYDMYSYGYQVTCENLWTPGNV 880
+ VV D E GC T+TD Y + KGP+Y+LD + + +PTSVT KW L + L+V G+IFYC G+ GGDCDELRIQST ++ E+RGHGGS+YF T+VTSW T NK PQ+ GRSF+NCVSE + ETC+ +K++ GECRMDII+SEMGY+G+ DS+SYGLTWK R GFC D +NP+VF+TTNVYG I NSDIHHMYY YSYG+Q +WT +
Sbjct: 10 AIVVHTDAESEGCFTLTDLYNFRGTENDGSSKGPLYMLDGSGSKITAPTSVTKKWLLEAELYVTNGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKQPQETYEGGRSFLNCVSEKLTGETCDGMAKNDMGECRMDIINSEMGYMGFFDSESYGLTWKVRRQAGRGVVRGFCKDLSNPDVFETTNVYGDIKNSDIHHMYYGHYSYGHQ---GGVWTNNEM 247
BLAST of mRNA_H-elongata_contig73041.14982.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI) HSP 1 Score: 266 bits (680), Expect = 6.940e-77 Identity = 131/255 (51.37%), Postives = 169/255 (66.27%), Query Frame = 2
Query: 134 LKSYSESCGPFFYLSCHDFTTSFVVDPDL--EDGGCGTMTDPYQSCVECYGWTPKGPIYILDDNDGIMYSPTSVTGKWRLTSHLFVLRGSIFYCRGTSIGGDCDELRIQSTSSTNYNELRGHGGSLYFEDTLVTSWHTLNKTPQD----GRSFINCVSEYKSDETCEDQSKHNYGECRMDIIDSEMGYLGWSDSDSYGLTWKARGFCADKNNPEVFDTTNVYGGITNSDIHHMYYDMYSYGYQVTCENLWTPGNV 880
L S SCG + S V L E GC TMTD Y + KGP+Y+LDD+ + P+ +T W L + L++ G +FYC+GTS GGDC++LRIQST S +++E+RGHGGSLYFEDT+VTSW T NK PQ+ GRSF+NCVSE + + CE +K+ GECRMDII+SE+ YLG+ DS+SYG+TWK RGFC D +NPEVF+ TNVYG +T SDIHH+YY YSYG+Q +WT +
Sbjct: 414 LMEISSSCGDDEDRPSFRYAASSGVAGRLYAEGEGCFTMTDLYNFRGTENDGSSKGPVYMLDDDGTKLDIPSGITNNWLLAAELYITGGGVFYCKGTSAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYENGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKVRGFCKDLSNPEVFELTNVYGDLTGSDIHHLYYGHYSYGHQ---GGVWTNNKM 665
BLAST of mRNA_H-elongata_contig73041.14982.1 vs. uniprot
Match: A0A6H5KWQ2_9PHAE (MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ2_9PHAE) HSP 1 Score: 251 bits (640), Expect = 3.920e-76 Identity = 120/225 (53.33%), Postives = 156/225 (69.33%), Query Frame = 2
Query: 242 MTDPYQSCVECYGWTPKGPIYILDDNDGIMYSPTSVTGKWRLTSHLFVLRGSIFYCRGTSIGGDCDELRIQSTSSTNYNELRGHGGSLYFEDTLVTSWHTLNKTPQD----GRSFINCVSEYKSDETCEDQSKHNYGECRMDIIDSEMGYLGWSDSDSYGLTWKAR--------GFCADKNNPEVFDTTNVYGGITNSDIHHMYYDMYSYGYQVTCENLWTPGNV 880
MTD Y + KGP+Y+LDD+ + P+ +T W L + L++ G +FYC+GTS GGDC++LRIQST S +++E+RGHGGSLYFEDT+VTSW T NK PQ+ GRSF+NCVSE + + CE +K+ GECRMDII+SE+ YLG+ DS+SYG+TWKAR GFC D +NPEVFD TNVYG + SDIHH+YY YSYG+Q +WT +
Sbjct: 1 MTDLYNFRGTEKDGSSKGPVYMLDDDGTKLDIPSGITNNWLLAAELYITGGGVFYCKGTSAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYEGGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKARLTRGFPVRGFCKDLSNPEVFDLTNVYGDLIGSDIHHLYYGHYSYGHQ---GGVWTNNKM 222
BLAST of mRNA_H-elongata_contig73041.14982.1 vs. uniprot
Match: D7FIU4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU4_ECTSI) HSP 1 Score: 251 bits (641), Expect = 3.980e-76 Identity = 119/196 (60.71%), Postives = 150/196 (76.53%), Query Frame = 2
Query: 305 ILDDNDGIMYSPTSVTGKWRLTSHLFVLRGSIFYCRGTSIGGDCDELRIQSTSSTNYNELRGHGGSLYFEDTLVTSWHTLNKTPQD----GRSFINCVSEYKSDETCEDQSKHNYGECRMDIIDSEMGYLGWSDSDSYGLTWKARGFCADKNNPEVFDTTNVYGGITNSDIHHMYYDMYSYGYQVTCENLWTPGNV 880
+LDD+ + SPTSVT KW L S L+V G+IFYC G+ GGDCDELRIQST ++ E+RGHGGS+YF T+VTSW T NK PQ+ GRSF+NCVSE + ETC+ ++K++ GECRMDII+SEMGY+G+ D++SYGLTWK RGFC D +NP+VF+TTNVYG I NS+IHHMYY MYSYG+Q +WT +
Sbjct: 1 MLDDSGNKITSPTSVTKKWLLESELYVTDGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGETCDGKAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCKDLSNPDVFETTNVYGDIKNSNIHHMYYGMYSYGHQ---GGVWTNNEM 193
BLAST of mRNA_H-elongata_contig73041.14982.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI) HSP 1 Score: 253 bits (646), Expect = 6.810e-76 Identity = 122/227 (53.74%), Postives = 160/227 (70.48%), Query Frame = 2
Query: 203 VVDPDLEDGGCGTMTDPYQSCVECYGWTPKGPIYILDDNDGIMYSPTSVTGKWRLTSHLFVLRGSIFYCRGTSIGGDCDELRIQSTSSTNYNELRGHGGSLYFEDTLVTSWHTLNKTPQ----DGRSFINCVSEYKSDE-TCEDQSKHNYGECRMDIIDSEMGYLGWSDSDSYGLTWKARGFCADKNNPEVFDTTNVYGGITNSDIHHMYYDMYSYGYQVTCENLWT 868
++D + + GGC T++D Y KGP+++LD ND + + T+ TGKW LT+ LFV G+ YCRG +GG+C ELRI+STS +++ E+RGHGG+LYFEDT+VTSW + PQ DGRSFI CVSE + E TC + +N GECRMDIIDSEMGYLG+ S++YG+TWK RGFC+D +NP+VFD NVYG + SDIHHMYY MYS+G+Q +WT
Sbjct: 1 MIDAEGDGGGCFTLSDLYAWQGFYNNGNSKGPVFVLDSNDRVDETATTTTGKWLLTADLFVTGGATLYCRGKGVGGNCAELRIRSTSGSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKDGRSFIRCVSEVLTGEDTC---AINNMGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSDLSNPDVFDDVNVYGDMKGSDIHHMYYGMYSFGHQ---GGVWT 221
BLAST of mRNA_H-elongata_contig73041.14982.1 vs. uniprot
Match: D7FXE5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE5_ECTSI) HSP 1 Score: 201 bits (510), Expect = 2.630e-56 Identity = 113/240 (47.08%), Postives = 143/240 (59.58%), Query Frame = 2
Query: 143 YSESCGPFFYLSCHDFTTSFVVDPDLEDGGCGTMTDPYQSCVECYGWTPKGPIYILDDNDGIMYSPTSVTGKWRLTSHLFVLRGSIFYCRGTSIGGDCDELRIQSTSSTNYNELRGHGGSLYFEDTLVTSWHTLNKTPQ----DGRSFINCVSEY--KSDETCEDQSKHNYGECRMDIIDSEMGYLGWSDSDSYGLTWKARGFCADKNNPEVFDTTNVYGGITNSDIHHMYYDMYSYGYQ 844
Y+ES + S + TT GGC T+ ++S KGP+Y +D + G + TS TG W LT L+V G G+ GGD DELR+ ST+ T N LR HGGSL F T V SW T +P DGRS+I+ +SE DETCE +K+ GE RMDI SE+GYLG+ DS+SYGLTWK RGFC DK+NPEVFD NVYG + +SDIHHM + +Y+YG+Q
Sbjct: 48 YAESTARLYLESADNGTTR---------GGCVTLGQIWESRAG------KGPLYAVDPDSGNV--STSATGTWLLTEELYVEDGITLEVYGSEAGGDADELRLLSTNETFIN-LRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQ 269
BLAST of mRNA_H-elongata_contig73041.14982.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI) HSP 1 Score: 199 bits (507), Expect = 8.090e-55 Identity = 108/219 (49.32%), Postives = 135/219 (61.64%), Query Frame = 2
Query: 206 VDPDLEDGGCGTMTDPYQSCVECYGWTPKGPIYILDDNDGIMYSPTSVTGKWRLTSHLFVLRGSIFYCRGTSIGGDCDELRIQSTSSTNYNELRGHGGSLYFEDTLVTSWHTLNKTPQ----DGRSFINCVSEY--KSDETCEDQSKHNYGECRMDIIDSEMGYLGWSDSDSYGLTWKARGFCADKNNPEVFDTTNVYGGITNSDIHHMYYDMYSYGYQ 844
D GGC T+ ++S KGP+Y +D + G + TS TG W LT L+V G G+ GGD DELR+ ST+ T N LR HGGSL F T V SW T +P DGRS+I+ +SE DETCE +K+ GE RMDI SE+GYLG+ DS+SYGLTWK RGFC DK+NPEVFD NVYG + +SDIHHM + +Y+YG+Q
Sbjct: 60 ADNGTTRGGCVTLGQIWESRAG------KGPLYAVDPDSGNV--STSATGTWLLTEELYVEDGITLKVYGSEAGGDADELRLLSTNETFIN-LRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQ 269
BLAST of mRNA_H-elongata_contig73041.14982.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI) HSP 1 Score: 196 bits (497), Expect = 2.460e-53 Identity = 107/212 (50.47%), Postives = 135/212 (63.68%), Query Frame = 2
Query: 227 GGCGTMTDPYQSCVECYGWTPKGPIYILDDNDGIMYSPTSVTGKWRLTSHLFVLRGSIFYCRGTSIGGDCDELRIQSTSSTNYNELRGHGGSLYFEDTLVTSWHTLNKTPQ----DGRSFINCVSEYKSDE--TCEDQSKHNYGECRMDIIDSEMGYLGWSDSDSYGLTWKARGFCADKNNPEVFDTTNVYGGITNSDIHHMYYDMYSYGYQ 844
GGC T+ ++S K P+Y +D + G + S T TG W LT L+V G GT GGD DELR+ STS T Y LR HGGSL F T V SW T +P DGRS+I+ VSE +DE TCE +K+ GE RMDI +SE+GYLG+ DS+SYGLTWK RGFC DK+NPE+FD NVYG + +SDIHH+ + +Y+YG+Q
Sbjct: 71 GGCATLGQIWESRAG------KAPLYAVDPDSGDV-SETE-TGTWLLTEELYVEDGITLKVYGTDEGGDADELRLLSTSET-YINLRAHGGSLDFVGTKVFSWDTSTNSPDEDETDGRSYISAVSEIVTDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPEIFDDVNVYGNMYDSDIHHLRFGLYTYGHQ 273
BLAST of mRNA_H-elongata_contig73041.14982.1 vs. uniprot
Match: D8LHA2_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA2_ECTSI) HSP 1 Score: 188 bits (478), Expect = 5.430e-53 Identity = 104/210 (49.52%), Postives = 133/210 (63.33%), Query Frame = 2
Query: 227 GGCGTMTDPYQSCVECYGWTPKGPIYILDDNDGIMYSPTSVTGKWRLTSHLFVLRGSIFYCRGTSIGGDCDELRIQSTSSTNYNELRGHGGSLYFEDTLVTSWHTLNKTPQ----DGRSFINCVSEYKSDE--TCEDQSKHNYGECRMDIIDSEMGYLGWSDSDSYGLTWKARGFCADKNNPEVFDTTNVYGGITNSDIHHMYYDMYSYG 838
GGC T+ ++S KGP+Y +D + G + S T TG W LT L+V G GT GGD DELR+ STS T Y LR +GGSL F T V SW T +P DGRS+I+ VSE +DE +CE +K+ GE RMDI +SE+GYLG+ DS+SYGLTWK RGFC DK+NPE+FD NVYG + +SDIHH+ + +Y+ G
Sbjct: 71 GGCATLGQVWESRAG------KGPLYAVDPDSGDV-SETQ-TGTWLLTEELYVEDGITLKVYGTDEGGDADELRLLSTSDT-YINLRAYGGSLDFVGTKVFSWDTSTNSPDVVETDGRSYISAVSEIVTDEDESCEGHAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPEIFDDVNVYGNMYDSDIHHLRFGLYTDG 271 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73041.14982.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig73041.14982.1 >prot_H-elongata_contig73041.14982.1 ID=prot_H-elongata_contig73041.14982.1|Name=mRNA_H-elongata_contig73041.14982.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=293bp MILIPKPSDQTRQRGVCMCMCVFVCVRPRIDWLPTCCLKSYSESCGPFFYback to top mRNA from alignment at H-elongata_contig73041:1738..3127- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig73041.14982.1 ID=mRNA_H-elongata_contig73041.14982.1|Name=mRNA_H-elongata_contig73041.14982.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1390bp|location=Sequence derived from alignment at H-elongata_contig73041:1738..3127- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig73041:1738..3127- >mRNA_H-elongata_contig73041.14982.1 ID=mRNA_H-elongata_contig73041.14982.1|Name=mRNA_H-elongata_contig73041.14982.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1758bp|location=Sequence derived from alignment at H-elongata_contig73041:1738..3127- (Himanthalia elongata Himel1 dioecious)back to top |