mRNA_H-elongata_contig73041.14982.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig73041.14982.1
Unique NamemRNA_H-elongata_contig73041.14982.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig73041.14982.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI)

HSP 1 Score: 272 bits (696), Expect = 1.960e-82
Identity = 128/215 (59.53%), Postives = 161/215 (74.88%), Query Frame = 2
Query:  212 PDLEDGGCGTMTDPYQSCVECYGWTPKGPIYILDDNDGIMYSPTSVTGKWRLTSHLFVLRGSIFYCRGTSIGGDCDELRIQSTSSTNYNELRGHGGSLYFEDTLVTSWHTLNKTPQ----DGRSFINCVSEYKSDETCEDQSKHNYGECRMDIIDSEMGYLGWSDSDSYGLTWKARGFCADKNNPEVFDTTNVYGGITNSDIHHMYYDMYSYGYQ 844
            PD E  GC T+TD Y   +E  G + KGPI+ LDD+   + +P  ++ KW LT+ L +  G++FYCRG+SIGGDCDELRIQST  T+++E+R HGGS+YFE T+VTSW T NKTPQ     GRSF+NCVSE  + E C  Q+++  GECRMDII+SE+GYLG+ DS+SYGLTWK RGFC D +NP+VFDTTNVYG +  SDIHH YY  YSYG+Q
Sbjct:   80 PDAEGEGCFTITDLYNFRLESDG-SAKGPIFNLDDSYNTVLNPKVLSNKWLLTAELHITGGAVFYCRGSSIGGDCDELRIQSTGPTDFHEVRAHGGSMYFESTIVTSWDTPNKTPQATYVGGRSFLNCVSEKLTGEVCVGQAQNEMGECRMDIINSEIGYLGYFDSESYGLTWKVRGFCKDLSNPDVFDTTNVYGNLIGSDIHHNYYGQYSYGHQ 293          
BLAST of mRNA_H-elongata_contig73041.14982.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE)

HSP 1 Score: 264 bits (675), Expect = 5.450e-80
Identity = 131/241 (54.36%), Postives = 165/241 (68.46%), Query Frame = 2
Query:  197 SFVVDPDLEDGGCGTMTDPYQSCVECYGWTPKGPIYILDDNDGIMYSPTSVTGKWRLTSHLFVLRGSIFYCRGTSIGGDCDELRIQSTSSTNYNELRGHGGSLYFEDTLVTSWHTLNKTPQD----GRSFINCVSEYKSDETCEDQSKHNYGECRMDIIDSEMGYLGWSDSDSYGLTWKAR---------GFCADKNNPEVFDTTNVYGGITNSDIHHMYYDMYSYGYQVTCENLWTPGNV 880
            + VV  D E  GC T+TD Y         + KGP+Y+LD +   + +PTSVT KW L + L+V  G+IFYC G+  GGDCDELRIQST   ++ E+RGHGGS+YF  T+VTSW T NK PQ+    GRSF+NCVSE  + ETC+  +K++ GECRMDII+SEMGY+G+ DS+SYGLTWK R         GFC D +NP+VF+TTNVYG I NSDIHHMYY  YSYG+Q     +WT   +
Sbjct:   10 AIVVHTDAESEGCFTLTDLYNFRGTENDGSSKGPLYMLDGSGSKITAPTSVTKKWLLEAELYVTNGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKQPQETYEGGRSFLNCVSEKLTGETCDGMAKNDMGECRMDIINSEMGYMGFFDSESYGLTWKVRRQAGRGVVRGFCKDLSNPDVFETTNVYGDIKNSDIHHMYYGHYSYGHQ---GGVWTNNEM 247          
BLAST of mRNA_H-elongata_contig73041.14982.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI)

HSP 1 Score: 266 bits (680), Expect = 6.940e-77
Identity = 131/255 (51.37%), Postives = 169/255 (66.27%), Query Frame = 2
Query:  134 LKSYSESCGPFFYLSCHDFTTSFVVDPDL--EDGGCGTMTDPYQSCVECYGWTPKGPIYILDDNDGIMYSPTSVTGKWRLTSHLFVLRGSIFYCRGTSIGGDCDELRIQSTSSTNYNELRGHGGSLYFEDTLVTSWHTLNKTPQD----GRSFINCVSEYKSDETCEDQSKHNYGECRMDIIDSEMGYLGWSDSDSYGLTWKARGFCADKNNPEVFDTTNVYGGITNSDIHHMYYDMYSYGYQVTCENLWTPGNV 880
            L   S SCG         +  S  V   L  E  GC TMTD Y         + KGP+Y+LDD+   +  P+ +T  W L + L++  G +FYC+GTS GGDC++LRIQST S +++E+RGHGGSLYFEDT+VTSW T NK PQ+    GRSF+NCVSE  + + CE  +K+  GECRMDII+SE+ YLG+ DS+SYG+TWK RGFC D +NPEVF+ TNVYG +T SDIHH+YY  YSYG+Q     +WT   +
Sbjct:  414 LMEISSSCGDDEDRPSFRYAASSGVAGRLYAEGEGCFTMTDLYNFRGTENDGSSKGPVYMLDDDGTKLDIPSGITNNWLLAAELYITGGGVFYCKGTSAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYENGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKVRGFCKDLSNPEVFELTNVYGDLTGSDIHHLYYGHYSYGHQ---GGVWTNNKM 665          
BLAST of mRNA_H-elongata_contig73041.14982.1 vs. uniprot
Match: A0A6H5KWQ2_9PHAE (MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ2_9PHAE)

HSP 1 Score: 251 bits (640), Expect = 3.920e-76
Identity = 120/225 (53.33%), Postives = 156/225 (69.33%), Query Frame = 2
Query:  242 MTDPYQSCVECYGWTPKGPIYILDDNDGIMYSPTSVTGKWRLTSHLFVLRGSIFYCRGTSIGGDCDELRIQSTSSTNYNELRGHGGSLYFEDTLVTSWHTLNKTPQD----GRSFINCVSEYKSDETCEDQSKHNYGECRMDIIDSEMGYLGWSDSDSYGLTWKAR--------GFCADKNNPEVFDTTNVYGGITNSDIHHMYYDMYSYGYQVTCENLWTPGNV 880
            MTD Y         + KGP+Y+LDD+   +  P+ +T  W L + L++  G +FYC+GTS GGDC++LRIQST S +++E+RGHGGSLYFEDT+VTSW T NK PQ+    GRSF+NCVSE  + + CE  +K+  GECRMDII+SE+ YLG+ DS+SYG+TWKAR        GFC D +NPEVFD TNVYG +  SDIHH+YY  YSYG+Q     +WT   +
Sbjct:    1 MTDLYNFRGTEKDGSSKGPVYMLDDDGTKLDIPSGITNNWLLAAELYITGGGVFYCKGTSAGGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYEGGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKARLTRGFPVRGFCKDLSNPEVFDLTNVYGDLIGSDIHHLYYGHYSYGHQ---GGVWTNNKM 222          
BLAST of mRNA_H-elongata_contig73041.14982.1 vs. uniprot
Match: D7FIU4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU4_ECTSI)

HSP 1 Score: 251 bits (641), Expect = 3.980e-76
Identity = 119/196 (60.71%), Postives = 150/196 (76.53%), Query Frame = 2
Query:  305 ILDDNDGIMYSPTSVTGKWRLTSHLFVLRGSIFYCRGTSIGGDCDELRIQSTSSTNYNELRGHGGSLYFEDTLVTSWHTLNKTPQD----GRSFINCVSEYKSDETCEDQSKHNYGECRMDIIDSEMGYLGWSDSDSYGLTWKARGFCADKNNPEVFDTTNVYGGITNSDIHHMYYDMYSYGYQVTCENLWTPGNV 880
            +LDD+   + SPTSVT KW L S L+V  G+IFYC G+  GGDCDELRIQST   ++ E+RGHGGS+YF  T+VTSW T NK PQ+    GRSF+NCVSE  + ETC+ ++K++ GECRMDII+SEMGY+G+ D++SYGLTWK RGFC D +NP+VF+TTNVYG I NS+IHHMYY MYSYG+Q     +WT   +
Sbjct:    1 MLDDSGNKITSPTSVTKKWLLESELYVTDGAIFYCIGSEEGGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGETCDGKAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCKDLSNPDVFETTNVYGDIKNSNIHHMYYGMYSYGHQ---GGVWTNNEM 193          
BLAST of mRNA_H-elongata_contig73041.14982.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI)

HSP 1 Score: 253 bits (646), Expect = 6.810e-76
Identity = 122/227 (53.74%), Postives = 160/227 (70.48%), Query Frame = 2
Query:  203 VVDPDLEDGGCGTMTDPYQSCVECYGWTPKGPIYILDDNDGIMYSPTSVTGKWRLTSHLFVLRGSIFYCRGTSIGGDCDELRIQSTSSTNYNELRGHGGSLYFEDTLVTSWHTLNKTPQ----DGRSFINCVSEYKSDE-TCEDQSKHNYGECRMDIIDSEMGYLGWSDSDSYGLTWKARGFCADKNNPEVFDTTNVYGGITNSDIHHMYYDMYSYGYQVTCENLWT 868
            ++D + + GGC T++D Y           KGP+++LD ND +  + T+ TGKW LT+ LFV  G+  YCRG  +GG+C ELRI+STS +++ E+RGHGG+LYFEDT+VTSW    + PQ    DGRSFI CVSE  + E TC   + +N GECRMDIIDSEMGYLG+  S++YG+TWK RGFC+D +NP+VFD  NVYG +  SDIHHMYY MYS+G+Q     +WT
Sbjct:    1 MIDAEGDGGGCFTLSDLYAWQGFYNNGNSKGPVFVLDSNDRVDETATTTTGKWLLTADLFVTGGATLYCRGKGVGGNCAELRIRSTSGSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKDGRSFIRCVSEVLTGEDTC---AINNMGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSDLSNPDVFDDVNVYGDMKGSDIHHMYYGMYSFGHQ---GGVWT 221          
BLAST of mRNA_H-elongata_contig73041.14982.1 vs. uniprot
Match: D7FXE5_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE5_ECTSI)

HSP 1 Score: 201 bits (510), Expect = 2.630e-56
Identity = 113/240 (47.08%), Postives = 143/240 (59.58%), Query Frame = 2
Query:  143 YSESCGPFFYLSCHDFTTSFVVDPDLEDGGCGTMTDPYQSCVECYGWTPKGPIYILDDNDGIMYSPTSVTGKWRLTSHLFVLRGSIFYCRGTSIGGDCDELRIQSTSSTNYNELRGHGGSLYFEDTLVTSWHTLNKTPQ----DGRSFINCVSEY--KSDETCEDQSKHNYGECRMDIIDSEMGYLGWSDSDSYGLTWKARGFCADKNNPEVFDTTNVYGGITNSDIHHMYYDMYSYGYQ 844
            Y+ES    +  S  + TT          GGC T+   ++S         KGP+Y +D + G +   TS TG W LT  L+V  G      G+  GGD DELR+ ST+ T  N LR HGGSL F  T V SW T   +P     DGRS+I+ +SE     DETCE  +K+  GE RMDI  SE+GYLG+ DS+SYGLTWK RGFC DK+NPEVFD  NVYG + +SDIHHM + +Y+YG+Q
Sbjct:   48 YAESTARLYLESADNGTTR---------GGCVTLGQIWESRAG------KGPLYAVDPDSGNV--STSATGTWLLTEELYVEDGITLEVYGSEAGGDADELRLLSTNETFIN-LRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQ 269          
BLAST of mRNA_H-elongata_contig73041.14982.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI)

HSP 1 Score: 199 bits (507), Expect = 8.090e-55
Identity = 108/219 (49.32%), Postives = 135/219 (61.64%), Query Frame = 2
Query:  206 VDPDLEDGGCGTMTDPYQSCVECYGWTPKGPIYILDDNDGIMYSPTSVTGKWRLTSHLFVLRGSIFYCRGTSIGGDCDELRIQSTSSTNYNELRGHGGSLYFEDTLVTSWHTLNKTPQ----DGRSFINCVSEY--KSDETCEDQSKHNYGECRMDIIDSEMGYLGWSDSDSYGLTWKARGFCADKNNPEVFDTTNVYGGITNSDIHHMYYDMYSYGYQ 844
             D     GGC T+   ++S         KGP+Y +D + G +   TS TG W LT  L+V  G      G+  GGD DELR+ ST+ T  N LR HGGSL F  T V SW T   +P     DGRS+I+ +SE     DETCE  +K+  GE RMDI  SE+GYLG+ DS+SYGLTWK RGFC DK+NPEVFD  NVYG + +SDIHHM + +Y+YG+Q
Sbjct:   60 ADNGTTRGGCVTLGQIWESRAG------KGPLYAVDPDSGNV--STSATGTWLLTEELYVEDGITLKVYGSEAGGDADELRLLSTNETFIN-LRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCEDKSNPEVFDDVNVYGNVYDSDIHHMNFGLYTYGHQ 269          
BLAST of mRNA_H-elongata_contig73041.14982.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI)

HSP 1 Score: 196 bits (497), Expect = 2.460e-53
Identity = 107/212 (50.47%), Postives = 135/212 (63.68%), Query Frame = 2
Query:  227 GGCGTMTDPYQSCVECYGWTPKGPIYILDDNDGIMYSPTSVTGKWRLTSHLFVLRGSIFYCRGTSIGGDCDELRIQSTSSTNYNELRGHGGSLYFEDTLVTSWHTLNKTPQ----DGRSFINCVSEYKSDE--TCEDQSKHNYGECRMDIIDSEMGYLGWSDSDSYGLTWKARGFCADKNNPEVFDTTNVYGGITNSDIHHMYYDMYSYGYQ 844
            GGC T+   ++S         K P+Y +D + G + S T  TG W LT  L+V  G      GT  GGD DELR+ STS T Y  LR HGGSL F  T V SW T   +P     DGRS+I+ VSE  +DE  TCE  +K+  GE RMDI +SE+GYLG+ DS+SYGLTWK RGFC DK+NPE+FD  NVYG + +SDIHH+ + +Y+YG+Q
Sbjct:   71 GGCATLGQIWESRAG------KAPLYAVDPDSGDV-SETE-TGTWLLTEELYVEDGITLKVYGTDEGGDADELRLLSTSET-YINLRAHGGSLDFVGTKVFSWDTSTNSPDEDETDGRSYISAVSEIVTDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPEIFDDVNVYGNMYDSDIHHLRFGLYTYGHQ 273          
BLAST of mRNA_H-elongata_contig73041.14982.1 vs. uniprot
Match: D8LHA2_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA2_ECTSI)

HSP 1 Score: 188 bits (478), Expect = 5.430e-53
Identity = 104/210 (49.52%), Postives = 133/210 (63.33%), Query Frame = 2
Query:  227 GGCGTMTDPYQSCVECYGWTPKGPIYILDDNDGIMYSPTSVTGKWRLTSHLFVLRGSIFYCRGTSIGGDCDELRIQSTSSTNYNELRGHGGSLYFEDTLVTSWHTLNKTPQ----DGRSFINCVSEYKSDE--TCEDQSKHNYGECRMDIIDSEMGYLGWSDSDSYGLTWKARGFCADKNNPEVFDTTNVYGGITNSDIHHMYYDMYSYG 838
            GGC T+   ++S         KGP+Y +D + G + S T  TG W LT  L+V  G      GT  GGD DELR+ STS T Y  LR +GGSL F  T V SW T   +P     DGRS+I+ VSE  +DE  +CE  +K+  GE RMDI +SE+GYLG+ DS+SYGLTWK RGFC DK+NPE+FD  NVYG + +SDIHH+ + +Y+ G
Sbjct:   71 GGCATLGQVWESRAG------KGPLYAVDPDSGDV-SETQ-TGTWLLTEELYVEDGITLKVYGTDEGGDADELRLLSTSDT-YINLRAYGGSLDFVGTKVFSWDTSTNSPDVVETDGRSYISAVSEIVTDEDESCEGHAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKDKSNPEIFDDVNVYGNMYDSDIHHLRFGLYTDG 271          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73041.14982.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRM4_ECTSI1.960e-8259.53Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectoca... [more]
A0A6H5JGU8_9PHAE5.450e-8054.36MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D8LC73_ECTSI6.940e-7751.37Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus sili... [more]
A0A6H5KWQ2_9PHAE3.920e-7653.33MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7FIU4_ECTSI3.980e-7660.71Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7FRR8_ECTSI6.810e-7653.74Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7FXE5_ECTSI2.630e-5647.08Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7G339_ECTSI8.090e-5549.32Mannuronan C-5-epimerase n=2 Tax=Ectocarpus silicu... [more]
D7FXE4_ECTSI2.460e-5350.47Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D8LHA2_ECTSI5.430e-5349.52Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73041contigH-elongata_contig73041:1738..3127 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score268.5
Seed ortholog evalue3.8e-69
Seed eggNOG ortholog2880.D8LC73
KEGG koko:K11244
KEGG Pathwayko04011,ko04139,map04011,map04139
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Exons2
Model size1356
Cds size879
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73041.14982.1prot_H-elongata_contig73041.14982.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig73041 2227..3105 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931132.119748-UTR-H-elongata_contig73041:1737..20651622931132.119748-UTR-H-elongata_contig73041:1737..2065Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73041 1738..2065 -
1691679711.412866-UTR-H-elongata_contig73041:1737..20651691679711.412866-UTR-H-elongata_contig73041:1737..2065Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73041 1738..2065 -
1622931132.1357567-UTR-H-elongata_contig73041:2099..22261622931132.1357567-UTR-H-elongata_contig73041:2099..2226Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73041 2100..2226 -
1691679711.4243844-UTR-H-elongata_contig73041:2099..22261691679711.4243844-UTR-H-elongata_contig73041:2099..2226Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73041 2100..2226 -
1622931132.173632-UTR-H-elongata_contig73041:3105..31271622931132.173632-UTR-H-elongata_contig73041:3105..3127Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73041 3106..3127 -
1691679711.4435062-UTR-H-elongata_contig73041:3105..31271691679711.4435062-UTR-H-elongata_contig73041:3105..3127Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73041 3106..3127 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931132.1536608-CDS-H-elongata_contig73041:2226..31051622931132.1536608-CDS-H-elongata_contig73041:2226..3105Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73041 2227..3105 -
1691679711.433588-CDS-H-elongata_contig73041:2226..31051691679711.433588-CDS-H-elongata_contig73041:2226..3105Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73041 2227..3105 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig73041.14982.1

>prot_H-elongata_contig73041.14982.1 ID=prot_H-elongata_contig73041.14982.1|Name=mRNA_H-elongata_contig73041.14982.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=293bp
MILIPKPSDQTRQRGVCMCMCVFVCVRPRIDWLPTCCLKSYSESCGPFFY
LSCHDFTTSFVVDPDLEDGGCGTMTDPYQSCVECYGWTPKGPIYILDDND
GIMYSPTSVTGKWRLTSHLFVLRGSIFYCRGTSIGGDCDELRIQSTSSTN
YNELRGHGGSLYFEDTLVTSWHTLNKTPQDGRSFINCVSEYKSDETCEDQ
SKHNYGECRMDIIDSEMGYLGWSDSDSYGLTWKARGFCADKNNPEVFDTT
NVYGGITNSDIHHMYYDMYSYGYQVTCENLWTPGNVIIAITR*
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mRNA from alignment at H-elongata_contig73041:1738..3127-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig73041.14982.1 ID=mRNA_H-elongata_contig73041.14982.1|Name=mRNA_H-elongata_contig73041.14982.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1390bp|location=Sequence derived from alignment at H-elongata_contig73041:1738..3127- (Himanthalia elongata Himel1 dioecious)
TAATCCTCCTAGGCGAGGAGCAATGATACTTATTCCGAAACCCTCTGATC AAACGCGACAAAGGGGTGTATGTATGTGTATGTGTGTATTTGTGTGTGTC CGGCCACGTATTGACTGGCTACCTACTTGCTGCTTGAAATCATACTCTGA ATCTTGTGGACCATTTTTCTACCTTTCATGTCACGATTTTACAACGTCAT TTGTCGTTGATCCAGACCTCGAGGATGGTGGATGTGGAACCATGACCGAT CCCTACCAGAGTTGCGTGGAGTGCTATGGATGGACCCCGAAGGGGCCCAT CTACATCCTAGACGACAATGACGGCATCATGTACAGCCCCACTAGCGTGA CAGGCAAGTGGCGCCTCACTTCCCACCTCTTCGTCCTCAGAGGGTCCATA TTCTACTGCCGCGGCACCAGTATAGGTGGCGACTGCGACGAGCTGCGCAT TCAGTCCACAAGCTCCACAAACTACAACGAGCTCCGTGGCCACGGTGGCA GCCTGTACTTTGAGGACACTCTCGTCACCTCGTGGCATACTTTAAACAAG ACACCGCAGGACGGTCGGTCATTTATCAATTGCGTGTCTGAGTACAAGTC GGACGAGACGTGTGAAGATCAGTCCAAGCATAACTATGGGGAATGCCGGA TGGACATCATCGACTCTGAGATGGGCTACTTGGGATGGTCTGACTCCGAT TCCTATGGGTTGACGTGGAAGGCCCGCGGATTCTGCGCTGACAAAAACAA TCCAGAGGTGTTCGACACTACCAACGTTTATGGCGGCATAACAAACTCCG ATATTCACCACATGTACTACGACATGTACTCCTACGGCTACCAGGTAACA TGTGAGAATCTTTGGACTCCGGGTAACGTCATCATTGCGATCACGCGCTG ATATAAAATGTCACGTTTGACTGTAGTTTGTGTCTCCCGTGCGGAGCTAT GTTGTTTACTTCCATGAACCCGCCCCGCCCCTCGTGCATCCTCTCTGGGG ATGTGTGTCCCACCGACGCGAGAATAACGCATTAGTTATCGTTCTCTTGC CAAACGTGATAGGACGGAGTGTGGACGAATAACAAGATGCACGACAACTA TCAGTACGGTTTTGACCCCCACGATGATTCAGACTATCTCACCATCGCCA ATACCGATGTCTACAACAACGTCAATCATGGCATCATCGCCTCCAAGCGA TGCAACAATCTCAAGATTTACGAAAACGAAGTCTACAACGGAGGCGCAGA TGCTGTGGGCATCTTCCTCCGTCGTAGCTCCGATAACTGTGAGGTCTGCG GTAAGCCCAGGCATTGCCTAGCCTCGCTCCACCTATTATTTTGAATAAGA GAGGTATCGTGAGACTTGTGCACTGCAAACACCTCGTTCG
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Coding sequence (CDS) from alignment at H-elongata_contig73041:1738..3127-

>mRNA_H-elongata_contig73041.14982.1 ID=mRNA_H-elongata_contig73041.14982.1|Name=mRNA_H-elongata_contig73041.14982.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1758bp|location=Sequence derived from alignment at H-elongata_contig73041:1738..3127- (Himanthalia elongata Himel1 dioecious)
ATGATACTTATTCCGAAACCCTCTGATCAAACGCGACAAAGGGGTGTATG
TATGTGTATGTGTGTATTTGTGTGTGTCCGGCCACGTATTGACTGGCTAC
CTACTTGCTGCTTGAAATCATACTCTGAATCTTGTGGACCATTTTTCTAC
CTTTCATGTCACGATTTTACAACGTCATTTGTCGTTGATCCAGACCTCGA
GGATGGTGGATGTGGAACCATGACCGATCCCTACCAGAGTTGCGTGGAGT
GCTATGGATGGACCCCGAAGGGGCCCATCTACATCCTAGACGACAATGAC
GGCATCATGTACAGCCCCACTAGCGTGACAGGCAAGTGGCGCCTCACTTC
CCACCTCTTCGTCCTCAGAGGGTCCATATTCTACTGCCGCGGCACCAGTA
TAGGTGGCGACTGCGACGAGCTGCGCATTCAGTCCACAAGCTCCACAAAC
TACAACGAGCTCCGTGGCCACGGTGGCAGCCTGTACTTTGAGGACACTCT
CGTCACCTCGTGGCATACTTTAAACAAGACACCGCAGGACGGTCGGTCAT
TTATCAATTGCGTGTCTGAGTACAAGTCGGACGAGACGTGTGAAGATCAG
TCCAAGCATAACTATGGGGAATGCCGGATGGACATCATCGACTCTGAGAT
GGGCTACTTGGGATGGTCTGACTCCGATTCCTATGGGTTGACGTGGAAGG
CCCGCGGATTCTGCGCTGACAAAAACAATCCAGAGGTGTTCGACACTACC
AACGTTTATGGCGGCATAACAAACTCCGATATTCACCACATGTACTACGA
CATGTACTCCTACGGCTACCAGGTAACATGTGAGAATCTTTGGACTCCGG
GTAACGTCATCATTGCGATCACGCGCTGAATGATACTTATTCCGAAACCC
TCTGATCAAACGCGACAAAGGGGTGTATGTATGTGTATGTGTGTATTTGT
GTGTGTCCGGCCACGTATTGACTGGCTACCTACTTGCTGCTTGAAATCAT
ACTCTGAATCTTGTGGACCATTTTTCTACCTTTCATGTCACGATTTTACA
ACGTCATTTGTCGTTGATCCAGACCTCGAGGATGGTGGATGTGGAACCAT
GACCGATCCCTACCAGAGTTGCGTGGAGTGCTATGGATGGACCCCGAAGG
GGCCCATCTACATCCTAGACGACAATGACGGCATCATGTACAGCCCCACT
AGCGTGACAGGCAAGTGGCGCCTCACTTCCCACCTCTTCGTCCTCAGAGG
GTCCATATTCTACTGCCGCGGCACCAGTATAGGTGGCGACTGCGACGAGC
TGCGCATTCAGTCCACAAGCTCCACAAACTACAACGAGCTCCGTGGCCAC
GGTGGCAGCCTGTACTTTGAGGACACTCTCGTCACCTCGTGGCATACTTT
AAACAAGACACCGCAGGACGGTCGGTCATTTATCAATTGCGTGTCTGAGT
ACAAGTCGGACGAGACGTGTGAAGATCAGTCCAAGCATAACTATGGGGAA
TGCCGGATGGACATCATCGACTCTGAGATGGGCTACTTGGGATGGTCTGA
CTCCGATTCCTATGGGTTGACGTGGAAGGCCCGCGGATTCTGCGCTGACA
AAAACAATCCAGAGGTGTTCGACACTACCAACGTTTATGGCGGCATAACA
AACTCCGATATTCACCACATGTACTACGACATGTACTCCTACGGCTACCA
GGTAACATGTGAGAATCTTTGGACTCCGGGTAACGTCATCATTGCGATCA
CGCGCTGA
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