mRNA_H-elongata_contig73007.14978.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig73007.14978.1
Unique NamemRNA_H-elongata_contig73007.14978.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig73007.14978.1 vs. uniprot
Match: A0A6H5KYI2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYI2_9PHAE)

HSP 1 Score: 206 bits (525), Expect = 5.420e-59
Identity = 135/314 (42.99%), Postives = 179/314 (57.01%), Query Frame = 1 
Query:    1 ECSYHEGNRFMRFFVRVFEPPSRSSGQLLDEETTIVENIEGGL-----LVEIQLREGDHLYFSTLYREMMTNFLRSQDGVTITGTFCYQAKKLPEEGEGLVLKSPVNVLPCKSIMNKVDT--SICEFGSSIP-------------DEPMDEDMIEDVMNLVGALEAGFLDVQVDAATSIAGLTEGAEFLEQLCHPTAKKTANALCRASARLLVETDNRPARRQAAVTVANLSSSPELCLSLLDTDPPLSSHKKG---------------LVDALVTLSIQRSKDA----KEEEIGTRRECMRALTNLAESRSAR 825
            ECSYH GNRF+  F+RVF+ P R+SGQL D  +    N + G      LVE QLREGD L+FS L+RE++  F+ +Q+GV + GTF Y+ +  P  GEGL L+  VN+ P ++ +  +       + G S+P                +D DM++DV+ L   L   +LDVQ DAA ++AGLT   + LEQL    A   ANA+  A+ARLLVET +RPARRQAAV VANL+ +P+L  +LL +D                        LV++LV LS+ R   +     EEEIG RRECMRAL  LAESR  R
Sbjct:  243 ECSYHVGNRFLSLFIRVFKAPDRASGQLFDNSSVGNNNNDDGAEQTPYLVEAQLREGDRLHFSALFREILRAFM-NQEGVNLVGTFRYKPRTYPATGEGLALEQ-VNMAPSRNSIRLLAERGEATKTGGSLPVPASMARPQVSSSSPELDSDMMDDVVLLADMLSGSYLDVQADAAAAVAGLTTDVKLLEQLSRGAAANAANAIAHAAARLLVETRHRPARRQAAVAVANLTKTPQLRAALLASDXXXXXXXXXXXXXXXXXXXXXXXXLVESLVVLSMGRVDGSAARKSEEEIGMRRECMRALVGLAESRVVR 554
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73007.14978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KYI2_9PHAE5.420e-5942.99Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73007contigH-elongata_contig73007:374..2582 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size825
Cds size795
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73007.14978.1prot_H-elongata_contig73007.14978.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig73007 374..2552 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931131.7849836-CDS-H-elongata_contig73007:373..7021622931131.7849836-CDS-H-elongata_contig73007:373..702Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73007 374..702 -
1691679711.2351024-CDS-H-elongata_contig73007:373..7021691679711.2351024-CDS-H-elongata_contig73007:373..702Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73007 374..702 -
1622931131.8026412-CDS-H-elongata_contig73007:1397..16831622931131.8026412-CDS-H-elongata_contig73007:1397..1683Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73007 1398..1683 -
1691679711.2518728-CDS-H-elongata_contig73007:1397..16831691679711.2518728-CDS-H-elongata_contig73007:1397..1683Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73007 1398..1683 -
1622931131.8149464-CDS-H-elongata_contig73007:2372..25521622931131.8149464-CDS-H-elongata_contig73007:2372..2552Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73007 2373..2552 -
1691679711.269493-CDS-H-elongata_contig73007:2372..25521691679711.269493-CDS-H-elongata_contig73007:2372..2552Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73007 2373..2552 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931131.831035-UTR-H-elongata_contig73007:2552..25821622931131.831035-UTR-H-elongata_contig73007:2552..2582Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73007 2553..2582 -
1691679711.277897-UTR-H-elongata_contig73007:2552..25821691679711.277897-UTR-H-elongata_contig73007:2552..2582Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig73007 2553..2582 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig73007.14978.1

>prot_H-elongata_contig73007.14978.1 ID=prot_H-elongata_contig73007.14978.1|Name=mRNA_H-elongata_contig73007.14978.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=265bp
MRFFVRVFEPPSRSSGQLLDEETTIVENIEGGLLVEIQLREGDHLYFSTL
YREMMTNFLRSQDGVTITGTFCYQAKKLPEEGEGLVLKSPVNVLPCKSIM
NKVDTSICEFGSSIPDEPMDEDMIEDVMNLVGALEAGFLDVQVDAATSIA
GLTEGAEFLEQLCHPTAKKTANALCRASARLLVETDNRPARRQAAVTVAN
LSSSPELCLSLLDTDPPLSSHKKGLVDALVTLSIQRSKDAKEEEIGTRRE
CMRALTNLAESRSAR
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mRNA from alignment at H-elongata_contig73007:374..2582-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig73007.14978.1 ID=mRNA_H-elongata_contig73007.14978.1|Name=mRNA_H-elongata_contig73007.14978.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2209bp|location=Sequence derived from alignment at H-elongata_contig73007:374..2582- (Himanthalia elongata Himel1 dioecious)
GAGTGCTCCTACCACGAAGGGAACCGGTTCATGCGTTTTTTCGTTAGAGT
ATTCGAGCCGCCTTCGAGGTCATCCGGGCAGCTGCTCGACGAAGAAACGA
CGATTGTAGAAAATATCGAGGGAGGGCTGCTGGTGGAGATACAGCTGCGA
GAGGGCGACCACCTCTACTTTTCAACCCTCTACCGTGAAATGATGACAAA
CTTCTTAAGGGTGAGATTGAGAGAGGGGAGTAAGATATTTTTACCATAAT
CATCTTGGATGGTTAAAATCGGCGGGATAATATAGGGTTTCCAAGTGGTA
TAAAAAATGAATGAAAAAATTGCGCGAAAGTGAAAAGAAGCCTAAACTAG
TCCGCCAGTGGGAGGCTAGTTTAGGTTCCTTTTCACGTTGTTAGTGCATT
TTTTTCATGTACTTTTTATAACGCGGGGAAACCCTATCATGTACACAAAC
ACGTTGTATTAATATGTATCGAGGTAAATATAAATTAATGTCGCAATGCA
CCGACCGCGATTAAAAGCTAGAAGCATCGGATAGCGAGATGTACATCAAT
CAACCCCGGATACCAAAGGGGAGGATCGAAAAAAAGCATTTTCCCAATTC
TGCATACAGCCAGCGGGATGGGCAACCATATCCGACGAAGGCATACTGTG
CTATATATATATGTGTTGGCCATAAACACAGCTGCTCTGCATTCTTAGTA
CGCTAGTGGGGTAAAGCTATTTGTACATGGCATTTCATGAGTATTGTAGC
ATCATCGTCTGGTGATGATTTGGATATCGCGAGATAATTCCTAGATTCCT
AACCGGCCTTGCGTGGAGCCTAAAAAAATGCAAAATGAAACCGGAAGCGT
TGGCGTGCCATCCCTCGTTTACATTGCGTTTGTTCGGCGCAATTTGCAGT
CTCAAGATGGAGTTACAATAACGGGCACTTTTTGCTATCAGGCTAAAAAA
TTACCGGAGGAAGGCGAAGGTCTGGTGCTTAAAAGCCCCGTCAACGTACT
CCCTTGTAAAAGCATCATGAATAAAGTAGATACAAGCATTTGCGAATTCG
GTAGTTCGATTCCTGATGAGCCCATGGACGAAGATATGATCGAGGACGTC
ATGAATCTGGTTGGGGCCTTGGAGGCGGGCTTCCTGGATGTCCAAGTAGA
CGCCGCAACTTCAATCGCGGGTCTTACGGAGGGTGGTGAGATAATATCCT
TTATTTTCCGCTGTTCCTCTTGTTGCTTTGTTGGAATCTAAAATATCATG
TACAAAGGGTTTTATTATGGCGTAGTGTTTCGAAACAGGAAGCGAGGTGA
GTCTCTCCGGGAGCTTCACCCAGAAATTCTGTATCATAGGGCGTTTTGAT
GTACAGCAGCACTGCGCTACCAAACCAAACTGCGAGAGATATAATTACAC
ATTTTTTGGAAGACGGATTCTCGATGTTTGTGGCCTATTTTTCCCACGCC
TTGTGCATCCAACAAACCTATAGAAACCTCGGTAGTAAGTGACCCTTCGC
TCGCTCCCAGACTTTCTTTGACCATGTTGTATCGCTTCGTTCAGCCTCGG
GAATGCACGCTGCCGTGCGGTGCCTGTATTTCTTTTTGCTCAGATCGAGA
TTGTCCGCATATTTTATACTGATGACTGTGCTTCGTCAGTAATACTCCAC
AAACAGCATCAAGAATTAGTTACGTCCTTCACGTTGGTATATTCCAAAAT
ATAAATTTATATTTCATATTACACACAGTGCGTTCGTACGCACACTTAAT
ATCGCCCCGTACAATTCTACACGATGTATCCTGTACATGGTTGTGATGTC
AGTTAACCCTTTTCCTGCTACCTCCCACTTTCCGCGTGTCTGACATGATG
TTTGTCGCCTTCCTTTCCTTCCCGGCGAAGCCGAATTCCTAGAGCAGTTA
TGCCATCCAACCGCTAAAAAGACCGCAAATGCTCTTTGTCGCGCATCGGC
ACGCCTTCTCGTGGAGACCGACAACCGCCCCGCCAGACGTCAAGCCGCAG
TCACCGTCGCCAACCTTTCAAGTTCACCGGAACTATGCCTATCTCTCCTC
GACACTGACCCTCCTTTAAGTTCTCACAAGAAAGGGCTCGTAGACGCTCT
CGTGACCCTGTCGATTCAGAGGTCAAAAGACGCCAAAGAGGAGGAGATCG
GGACAAGGCGGGAGTGCATGCGCGCACTCACTAATCTTGCTGAATCTCGA
TCAGCCAGA
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Coding sequence (CDS) from alignment at H-elongata_contig73007:374..2582-

>mRNA_H-elongata_contig73007.14978.1 ID=mRNA_H-elongata_contig73007.14978.1|Name=mRNA_H-elongata_contig73007.14978.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1590bp|location=Sequence derived from alignment at H-elongata_contig73007:374..2582- (Himanthalia elongata Himel1 dioecious)
ATGCGTTTTTTCGTTAGAGTATTCGAGCCGCCTTCGAGGTCATCCGGGCA
GCTGCTCGACGAAGAAACGACGATTGTAGAAAATATCGAGGGAGGGCTGC
TGGTGGAGATACAGCTGCGAGAGGGCGACCACCTCTACTTTTCAACCCTC
TACCGTGAAATGATGACAAACTTCTTAAGGATGCGTTTTTTCGTTAGAGT
ATTCGAGCCGCCTTCGAGGTCATCCGGGCAGCTGCTCGACGAAGAAACGA
CGATTGTAGAAAATATCGAGGGAGGGCTGCTGGTGGAGATACAGCTGCGA
GAGGGCGACCACCTCTACTTTTCAACCCTCTACCGTGAAATGATGACAAA
CTTCTTAAGGTCTCAAGATGGAGTTACAATAACGGGCACTTTTTGCTATC
AGGCTAAAAAATTACCGGAGGAAGGCGAAGGTCTGGTGCTTAAAAGCCCC
GTCAACGTACTCCCTTGTAAAAGCATCATGAATAAAGTAGATACAAGCAT
TTGCGAATTCGGTAGTTCGATTCCTGATGAGCCCATGGACGAAGATATGA
TCGAGGACGTCATGAATCTGGTTGGGGCCTTGGAGGCGGGCTTCCTGGAT
GTCCAAGTAGACGCCGCAACTTCAATCGCGGGTCTTACGGAGGGTGTCTC
AAGATGGAGTTACAATAACGGGCACTTTTTGCTATCAGGCTAAAAAATTA
CCGGAGGAAGGCGAAGGTCTGGTGCTTAAAAGCCCCGTCAACGTACTCCC
TTGTAAAAGCATCATGAATAAAGTAGATACAAGCATTTGCGAATTCGGTA
GTTCGATTCCTGATGAGCCCATGGACGAAGATATGATCGAGGACGTCATG
AATCTGGTTGGGGCCTTGGAGGCGGGCTTCCTGGATGTCCAAGTAGACGC
CGCAACTTCAATCGCGGGTCTTACGGAGGGTGCCGAATTCCTAGAGCAGT
TATGCCATCCAACCGCTAAAAAGACCGCAAATGCTCTTTGTCGCGCATCG
GCACGCCTTCTCGTGGAGACCGACAACCGCCCCGCCAGACGTCAAGCCGC
AGTCACCGTCGCCAACCTTTCAAGTTCACCGGAACTATGCCTATCTCTCC
TCGACACTGACCCTCCTTTAAGTTCTCACAAGAAAGGGCTCGTAGACGCT
CTCGTGACCCTGTCGATTCAGAGGTCAAAAGACGCCAAAGAGGAGGAGAT
CGGGACAAGGCGGGAGTGCATGCGCGCACTCACTAATCTTGCTGAATCTC
GATCAGCCAGACCGAATTCCTAGAGCAGTTATGCCATCCAACCGCTAAAA
AGACCGCAAATGCTCTTTGTCGCGCATCGGCACGCCTTCTCGTGGAGACC
GACAACCGCCCCGCCAGACGTCAAGCCGCAGTCACCGTCGCCAACCTTTC
AAGTTCACCGGAACTATGCCTATCTCTCCTCGACACTGACCCTCCTTTAA
GTTCTCACAAGAAAGGGCTCGTAGACGCTCTCGTGACCCTGTCGATTCAG
AGGTCAAAAGACGCCAAAGAGGAGGAGATCGGGACAAGGCGGGAGTGCAT
GCGCGCACTCACTAATCTTGCTGAATCTCGATCAGCCAGA
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