mRNA_H-elongata_contig73002.14977.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig73002.14977.1
Unique NamemRNA_H-elongata_contig73002.14977.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig73002.14977.1 vs. uniprot
Match: D7G521_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G521_ECTSI)

HSP 1 Score: 186 bits (473), Expect = 1.470e-55
Identity = 90/119 (75.63%), Postives = 97/119 (81.51%), Query Frame = 1 
Query:   13 VTKGLEMNNLRGELYVQVMKQLNKNSTPASVQRCWEVLMMLVTCFPPPKARCRNGAMPGSDVENYVHYFVRCNAPENTRDKFNLAVHMSVYDGDKEKAPAAKEIPPLLSGFFEREISAR 369
            V KGLEM  LRGELYVQ MKQL KN+ PASVQRCWEV+ ML+TCFPPPK           D+ENYVHYFVRCNAPE+TR+KF LAVHMSVYDG KE AP+ KEIPPLLSGFFEREISAR
Sbjct:   99 VAKGLEMTELRGELYVQAMKQLTKNANPASVQRCWEVVTMLLTCFPPPK-----------DMENYVHYFVRCNAPEDTREKFKLAVHMSVYDGVKETAPSVKEIPPLLSGFFEREISAR 206
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BLAST of mRNA_H-elongata_contig73002.14977.1 vs. uniprot
Match: A0A6H5KSK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSK5_9PHAE)

HSP 1 Score: 182 bits (462), Expect = 7.310e-51
Identity = 89/119 (74.79%), Postives = 96/119 (80.67%), Query Frame = 1 
Query:   13 VTKGLEMNNLRGELYVQVMKQLNKNSTPASVQRCWEVLMMLVTCFPPPKARCRNGAMPGSDVENYVHYFVRCNAPENTRDKFNLAVHMSVYDGDKEKAPAAKEIPPLLSGFFEREISAR 369
            V KGLEM  LRGELYVQ MKQL KN+ PASVQR WEV+ ML+TCFPPPK           D+ENYVHYFVRCNAPE+TR+KF LAVHMSVYDG KE AP+ KEIPPLLSGFFEREISAR
Sbjct: 1092 VAKGLEMTELRGELYVQAMKQLTKNANPASVQRYWEVVTMLLTCFPPPK-----------DMENYVHYFVRCNAPEDTREKFKLAVHMSVYDGVKETAPSVKEIPPLLSGFFEREISAR 1199
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BLAST of mRNA_H-elongata_contig73002.14977.1 vs. uniprot
Match: A0A7S1U0W2_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U0W2_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 2.070e-20
Identity = 45/112 (40.18%), Postives = 70/112 (62.50%), Query Frame = 1 
Query:   34 NNLRGELYVQVMKQLNKNSTPASVQRCWEVLMMLVTCFPPPKARCRNGAMPGSDVENYVHYFVRCNAPENTRDKFNLAVHMSVYDGDKEKAPAAKEIPPLLSGFFEREISAR 369
            + LR E Y+QVMKQL  N +  S ++ WEV++ +++ FPPP++           VEN+V  F+R  APE  +DKF++A+H S Y G +    +  E P +LS F+E+E+SA+
Sbjct:  798 SELRAEFYIQVMKQLRNNPSTESAKKGWEVMIFMLSSFPPPES-----------VENFVALFLRQMAPEGQKDKFSIALHASTYGGGRSAPISLPEFPQILSKFYEQEMSAK 898
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BLAST of mRNA_H-elongata_contig73002.14977.1 vs. uniprot
Match: A0A7S2WRB6_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WRB6_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 2.460e-14
Identity = 37/110 (33.64%), Postives = 62/110 (56.36%), Query Frame = 1 
Query:   13 VTKGLEMNN-LRGELYVQVMKQLNKNSTPASVQRCWEVLMMLVTCFPPPKARCRNGAMPGSDVENYVHYFVRCNAPENTRDKFNLAVHMSVYDGDKEKAPAAKEIPPLLS 339
            V+ G++ +  LR E+Y Q++K L +N  P S+ + W++  + +  FP           P +D+ NY+H F+R NAP + +D +   ++   YDG K  APA  +IP L+S
Sbjct: 1275 VSSGIQQSEKLRDEIYCQILKHLTENPDPQSLSQAWKLFALCIQYFP-----------PSTDLGNYLHIFIRNNAPPHLKDSYKQYLYSIEYDGAKPVAPAVDQIPSLVS 1373
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BLAST of mRNA_H-elongata_contig73002.14977.1 vs. uniprot
Match: A0A7S3LM69_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LM69_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 5.860e-9
Identity = 31/103 (30.10%), Postives = 52/103 (50.49%), Query Frame = 1 
Query:   37 NLRGELYVQVMKQLNKNSTPASVQRCWEVLMMLVTCFPPPKARCRNGAMPGSDVENYVHYFVRCNAPENTRDKFNLAVHMSVYDGDKEKAPAAKEIPPLLSGF 345
            ++R E++  +MK    N +  SV + W++  + +  F             G D+ NYVH F+R NAP + + K   A++   Y+G K   P+  +IP L+S F
Sbjct:  757 DVRDEIFCLLMKHTTANPSAHSVSQAWKLFGLCIQFF-----------SAGEDLSNYVHIFIRRNAPSHLKQKLIDAMYTREYEGSKTVPPSVDQIPLLISNF 848
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BLAST of mRNA_H-elongata_contig73002.14977.1 vs. uniprot
Match: X6LS73_RETFI (MyTH4 domain-containing protein (Fragment) n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6LS73_RETFI)

HSP 1 Score: 58.9 bits (141), Expect = 1.020e-7
Identity = 31/110 (28.18%), Postives = 56/110 (50.91%), Query Frame = 1 
Query:   19 KGLEMNNLRGELYVQVMKQLNKNSTPASVQRCWEVLMMLVTCFPPPKARCRNGAMPGSDVENYVHYFVRCNAPENTRDKFNLAVHMSVY--DGDKEKAPAAKEIPPLLSG 342
            KG     LR E+Y Q++KQL  N    S+ R W  +++ +  FP           P  ++ENY+  F+R N P+  RD+  +A+   +Y  +   ++ P  +++  +L+G
Sbjct:  204 KGHSEQELRNEIYCQLIKQLTNNPKNQSITRGWNAMILCLYTFP-----------PSQELENYLEVFIR-NQPQERRDRCLIALQSLMYSKNSGSKRPPTLQDMTDILNG 301
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BLAST of mRNA_H-elongata_contig73002.14977.1 vs. uniprot
Match: A0A7S3FHF1_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3FHF1_9EUKA)

HSP 1 Score: 56.2 bits (134), Expect = 8.440e-7
Identity = 35/100 (35.00%), Postives = 52/100 (52.00%), Query Frame = 1 
Query:   40 LRGELYVQVMKQLNKNSTPASVQRCWEVLMMLVTCFPPPKARCRNGAMPGSDVENYVHYFVRCNAPENTRDKFNLAVHMSVYDGDKEKAPAAKEIPPLLS 339
            L+ E+YVQ+MKQL  N +PAS +  W++  ++V CFPP              VENYV  F+R   P +      L  + +   G + +AP   E+P +LS
Sbjct:  164 LQTEVYVQMMKQLTSNPSPASERLGWQLFALMVQCFPPDPL-----------VENYVANFLR-GGPLSATFYLRLG-YAARRRGPRSRAPLDSELPGMLS 250
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BLAST of mRNA_H-elongata_contig73002.14977.1 vs. uniprot
Match: A0A553P2X3_TIGCA (Uncharacterized protein n=1 Tax=Tigriopus californicus TaxID=6832 RepID=A0A553P2X3_TIGCA)

HSP 1 Score: 52.0 bits (123), Expect = 3.630e-5
Identity = 25/73 (34.25%), Postives = 40/73 (54.79%), Query Frame = 1 
Query:   13 VTKGLEMNNLRGELYVQVMKQLNKNSTPASVQRCWEVLMMLVTCFPPPKARCR---NGAMPGSDVENYVHYFV 222
            +  G+E   LR E+YVQ ++QLN N     + R W +L ++V  FPP K+  +   +      DVE+ +H +V
Sbjct: 1233 IKNGIEREELRDEIYVQCVRQLNNNPNQEQIDRLWLLLCLVVVAFPPSKSFFKYFVSFLKKNIDVEDPIHQYV 1305
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig73002.14977.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7G521_ECTSI1.470e-5575.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KSK5_9PHAE7.310e-5174.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1U0W2_9STRA2.070e-2040.18Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S2WRB6_9STRA2.460e-1433.64Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A7S3LM69_9STRA5.860e-930.10Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
X6LS73_RETFI1.020e-728.18MyTH4 domain-containing protein (Fragment) n=1 Tax... [more]
A0A7S3FHF1_9EUKA8.440e-735.00Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A553P2X3_TIGCA3.630e-534.25Uncharacterized protein n=1 Tax=Tigriopus californ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig73002contigH-elongata_contig73002:875..2766 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.3
Seed ortholog evalue4.4e-11
Seed eggNOG ortholog227086.JGI_V11_140911
KEGG koko:K10357,ko:K21868
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005856,GO:0015629,GO:0016459,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032991,GO:0042623,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0160@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03029,ko04131,ko04812
Hectar predicted targeting categoryother localisation
Exons3
Model size372
Cds size372
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig73002.14977.1prot_H-elongata_contig73002.14977.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig73002 875..2766 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931131.7049522-CDS-H-elongata_contig73002:874..9821622931131.7049522-CDS-H-elongata_contig73002:874..982Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73002 875..982 -
1691679711.1922402-CDS-H-elongata_contig73002:874..9821691679711.1922402-CDS-H-elongata_contig73002:874..982Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73002 875..982 -
1622931131.719425-CDS-H-elongata_contig73002:1327..13991622931131.719425-CDS-H-elongata_contig73002:1327..1399Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73002 1328..1399 -
1691679711.2148905-CDS-H-elongata_contig73002:1327..13991691679711.2148905-CDS-H-elongata_contig73002:1327..1399Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73002 1328..1399 -
1622931131.7364652-CDS-H-elongata_contig73002:2574..27661622931131.7364652-CDS-H-elongata_contig73002:2574..2766Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73002 2575..2766 -
1691679711.2261465-CDS-H-elongata_contig73002:2574..27661691679711.2261465-CDS-H-elongata_contig73002:2574..2766Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig73002 2575..2766 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig73002.14977.1

>prot_H-elongata_contig73002.14977.1 ID=prot_H-elongata_contig73002.14977.1|Name=mRNA_H-elongata_contig73002.14977.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp
MCVCVTKGLEMNNLRGELYVQVMKQLNKNSTPASVQRCWEVLMMLVTCFP
PPKARCRNGAMPGSDVENYVHYFVRCNAPENTRDKFNLAVHMSVYDGDKE
KAPAAKEIPPLLSGFFEREISAR*
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mRNA from alignment at H-elongata_contig73002:875..2766-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig73002.14977.1 ID=mRNA_H-elongata_contig73002.14977.1|Name=mRNA_H-elongata_contig73002.14977.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1892bp|location=Sequence derived from alignment at H-elongata_contig73002:875..2766- (Himanthalia elongata Himel1 dioecious)
ATGTGTGTGTGTGTGACAAAAGGGTTAGAGATGAATAATCTGCGAGGGGA
ACTGTACGTCCAGGTGATGAAGCAGCTCAACAAGAACTCCACTCCGGCGT
CCGTTCAGCGGTGCTGGGAGGTGCTCATGATGCTTGTGACGTGCTTCCCT
CCTCCCAAGGCGAGATGTAGAAACGGGGCGATGCCAGGCAGCGTGCGTAT
CAAGCGTCCCCCCTCCCCGGGTGTTCCACTCGATACAGCAGTATATGTTC
GAACCTTGGATCAAATAACGTAAAACGCATACATGTGTGCACTGCAGTAT
TGTGTCGAAAATAAAAAGTAAAAAATATGAACTGCAGTAGTATTGTGTTT
TATGTCTTGTGTATTATGTCGATTTGGTTGACGAGATGGAGGGAGCGCGT
GTGTTGAACTTCATTTCATTTCGCGATTTTTGTTTGTTTGTTTGGTGGTT
GAAAGTGTAGGCGTTAACCGAACCTCGACAGAAAAAGGGGTGTTTGGGTA
GATAGCTCGCTTTGGACCAAAGTGGTCGAGATGGTCGGGATAAGGGGTCT
AAAGCCGTGGGAGTCCCGTCTTCAAGTTAATTTCATCGCGGTCGAGTCGC
GATGCGATGCGATGCGGTTAGTTTGCTAGTTGGTTGGTTAAGTTACTTAT
GGAATCGCCTTTTTGCAGCAGAAGTCAGCGGGGAAAATGTTTTGTAGGTG
TGGAGGCGTTTTTCTCGTGCGATGAGCGCGCAACGCGGTGTTGCACGACG
AGCACCCGCGGTGTGACCGTGTCATGATGTCCGCCTGCTCGTAGAAAGAA
GAGAGAAAAAAAAATGTCCGAAAAACGCGCGCGGTTAATTTCTCGCATCA
TTAGTGTCGAGTTTGGGTCTGAAAACTTCTTGTTTGTTTCTTTGGCTATT
TTCTCCTTTCACCTTTTTTTGTGTGTTTCGTCACTTTTTGTTTGTTTGTT
TTTGTTTTTGAAGCAATAGCCGTGAACGATCGAAAGGTGTAGCAAGCCAA
AAAACAAAACGCCTTAACTCTTAATAATGAACAATGAAAACGTTGTTGCT
GCTACGTTCACTTTTATCCCTCCGTGTCCCCGGTCTGGGCGGAGGCTAGG
CGGAGGCTGATGTCCTCGAAGCTTTCATCCCCGTCCCTATTCATGCTGTC
TATATGTATGCTGTCTATATGTATGCTGTCTATCTGTATGCTGTCTATAT
GTATGCTGTCTATATGATTATATGTATATATGTATGCTGTCTATATGTAT
GCTGTCTATATGTATGCTGTCTATATGATTATATGTATATATGTATGCTG
TCTATATGTATGCTGTCTATATGTATGCTGTCTATATGTATGCTGTCTAT
ATGTCTGTCTTTCTCAGGATGTGGAGAACTACGTCCATTACTTCGTTCGC
TGCAATGCGCCGGAAAACACTCGCGACAAGTTCAACCTGGTAAGACCGTC
CATACATTGCGTTCGATACATTAATATGTCAACATTCAATATATCAATAG
GTCAATATATTAGCTCTTTCAGACATGTTATCTCCTCTCCATTGTCTCTT
TAGACATAATTGAGCTTCCTGAAAAAGAAAAGAAGAAGAAAGCACAGCCA
GCCGCAGTCGCAGCGAATCGCGTCACGAGTTCCTCCTCGTGTCCTTCAGT
AGCACACTGGAGATATAATAATAACATATTAAAACCCGCTGCTTCTCCTC
CTCCTCTTCTCCTCCTCCTTCTCCATGGTCTTCGTTAATTGGCTGTTGGC
GAACACGAACCGAACCAAACGGAACGGAATGAAGGCGGTGCACATGTCGG
TGTACGACGGCGATAAGGAGAAGGCGCCCGCCGCGAAGGAGATTCCCCCG
CTGCTGTCGGGGTTCTTTGAGAGAGAAATCAGCGCCAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig73002:875..2766-

>mRNA_H-elongata_contig73002.14977.1 ID=mRNA_H-elongata_contig73002.14977.1|Name=mRNA_H-elongata_contig73002.14977.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at H-elongata_contig73002:875..2766- (Himanthalia elongata Himel1 dioecious)
ATGTGTGTGTGTGTGACAAAAGGGTTAGAGATGAATAATCTGCGAGGGGA
ACTGTACGTCCAGGTGATGAAGCAGCTCAACAAGAACTCCACTCCGGCGT
CCGTTCAGCGGTGCTGGGAGGTGCTCATGATGCTTGTGACGTGCTTCCCT
CCTCCCAAGGCGAGATGTAGAAACGGGGCGATGCCAGGCAGCATGTGTGT
GTGTGTGACAAAAGGGTTAGAGATGAATAATCTGCGAGGGGAACTGTACG
TCCAGGTGATGAAGCAGCTCAACAAGAACTCCACTCCGGCGTCCGTTCAG
CGGTGCTGGGAGGTGCTCATGATGCTTGTGACGTGCTTCCCTCCTCCCAA
GGCGAGATGTAGAAACGGGGCGATGCCAGGCAGCGATGTGGAGAACTACG
TCCATTACTTCGTTCGCTGCAATGCGCCGGAAAACACTCGCGACAAGTTC
AACCTGGATGTGGAGAACTACGTCCATTACTTCGTTCGCTGCAATGCGCC
GGAAAACACTCGCGACAAGTTCAACCTGGCGGTGCACATGTCGGTGTACG
ACGGCGATAAGGAGAAGGCGCCCGCCGCGAAGGAGATTCCCCCGCTGCTG
TCGGGGTTCTTTGAGAGAGAAATCAGCGCCAGGTGAGCGGTGCACATGTC
GGTGTACGACGGCGATAAGGAGAAGGCGCCCGCCGCGAAGGAGATTCCCC
CGCTGCTGTCGGGGTTCTTTGAGAGAGAAATCAGCGCCAGGTGA
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