mRNA_H-elongata_contig72870.14970.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig72870.14970.1
Unique NamemRNA_H-elongata_contig72870.14970.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig72870.14970.1 vs. uniprot
Match: D8LHF5_ECTSI (Lipase_3 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHF5_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 5.980e-34
Identity = 63/89 (70.79%), Postives = 75/89 (84.27%), Query Frame = 1
Query:   40 TQVGLIQLISCSTAGKALQLSCHMLEGTICDIVRHCGDDRGRFTDCKFEYNMAHLLPQLLKLAQGKMIWVMGVAALILIIATLVILPEF 306
            TQVGLIQLISC TAGKALQLSCHMLEGTICDI+RHCGDDRGRFT+CKFEYNM+HL+PQ+L L QG+ +W+  +  L  + A L+ + EF
Sbjct:  904 TQVGLIQLISCDTAGKALQLSCHMLEGTICDIIRHCGDDRGRFTNCKFEYNMSHLVPQMLILLQGRWVWIGALLLLTGVAAMLLFVSEF 992          
BLAST of mRNA_H-elongata_contig72870.14970.1 vs. uniprot
Match: A0A7S2V565_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V565_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 3.340e-21
Identity = 42/94 (44.68%), Postives = 63/94 (67.02%), Query Frame = 1
Query:   22 PLSLSSTQVGLIQLISCSTAGKALQLSCHMLEGTICDIVRHCGDDRGRFTDCKFEYNMAHLLPQLLKLAQGKMIWVMGVAALILIIATLVILPE 303
            P+S+  TQVGL+Q I CS++  A+Q +CHM+EGT+C+++ HCGD RGRFT C + YN+  LLP +         W++    ++LI+   V+LPE
Sbjct:   48 PISMVDTQVGLVQHIMCSSSRLAIQNACHMIEGTLCELLSHCGDPRGRFTGCTYRYNVGALLPFVWNFLDDYFYWMLPGLGILLILGGSVLLPE 141          
BLAST of mRNA_H-elongata_contig72870.14970.1 vs. uniprot
Match: A0A7S3XTY2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XTY2_HETAK)

HSP 1 Score: 84.3 bits (207), Expect = 3.780e-17
Identity = 40/94 (42.55%), Postives = 58/94 (61.70%), Query Frame = 1
Query:   22 PLSLSSTQVGLIQLISCSTAGKALQLSCHMLEGTICDIVRHCGDDRGRFTDCKFEYNMAHLLPQLLKLAQGKMIWVMGVAALILIIATLVILPE 303
            P++   TQVG IQ I C +   AL  +CHMLEGT+C+++ HCGD RGRFT C++EYN+  L+P         + W++    L+ +   L I+PE
Sbjct:  248 PVARVDTQVGNIQHIMCKSESLALTNACHMLEGTLCELLAHCGDHRGRFTRCEYEYNIGSLVPFFWGFIDDYIFWLLPGVGLLFVFGALAIIPE 341          
BLAST of mRNA_H-elongata_contig72870.14970.1 vs. uniprot
Match: A0A6A5ACD0_9STRA (Lipase_3 domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5ACD0_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 7.200e-16
Identity = 32/61 (52.46%), Postives = 49/61 (80.33%), Query Frame = 1
Query:   22 PLSLSSTQVGLIQLISCSTAGKALQLSCHMLEGTICDIVRHCGDDRGRFTDCKFEYNMAHL 204
            P+++  TQ GLIQ I+C T   ++QLSCHM++GT+C++++HCGDDRGRF+ C+FE+ +  L
Sbjct:  131 PVTMIDTQSGLIQRITCDTPHLSMQLSCHMIQGTLCNLLQHCGDDRGRFSSCQFEHRITSL 191          
BLAST of mRNA_H-elongata_contig72870.14970.1 vs. uniprot
Match: A0A5D6XN61_9STRA (Lipase_3 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XN61_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.200e-14
Identity = 38/89 (42.70%), Postives = 60/89 (67.42%), Query Frame = 1
Query:   22 PLSLSSTQVGLIQLISCSTAGKALQLSCHMLEGTICDIVRHCGDDRGRFTDCKFEYNMAH----LLPQLLKLAQGKMIWVMGVAALILI 276
            P+++   Q G++Q ISC T   ++QLSCHMLEGTIC+++ +CGD RGR + C+FE+ +A     +LP+L  +   +++  M V A IL+
Sbjct:  799 PVTMIDVQAGMVQKISCDTPNLSMQLSCHMLEGTICNLLENCGDPRGRISACRFEHKIASVTDDMLPKLAAVLSPEVLVTMAVTAAILL 887          
BLAST of mRNA_H-elongata_contig72870.14970.1 vs. uniprot
Match: K3WLR8_GLOUD (Lipase_3 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WLR8_GLOUD)

HSP 1 Score: 77.8 bits (190), Expect = 1.630e-14
Identity = 36/69 (52.17%), Postives = 50/69 (72.46%), Query Frame = 1
Query:   22 PLSLSSTQVGLIQLISCSTAGKALQLSCHMLEGTICDIVRHCGDDRGRFTDCKFEYNMAH----LLPQL 216
            P+++   Q GLIQ ISC T   ++QLSCHMLEGT+C+++ HCGD +GR + CKFE+ +A     LLP+L
Sbjct:  730 PVTMIDAQAGLIQKISCDTPHLSMQLSCHMLEGTVCNLLEHCGDAQGRISSCKFEHKIASATDDLLPKL 798          
BLAST of mRNA_H-elongata_contig72870.14970.1 vs. uniprot
Match: A0A3M6VSC6_9STRA (Lipase_3 domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VSC6_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.250e-14
Identity = 37/81 (45.68%), Postives = 54/81 (66.67%), Query Frame = 1
Query:   22 PLSLSSTQVGLIQLISCSTAGKALQLSCHMLEGTICDIVRHCGDDRGRFTDCKFEYNMAH----LLPQLLKLAQGKMIWVM 252
            P+++   Q G+IQ ISC T   ++QLSCHMLEGTIC++V HCG  RGR + C FE+N+A     ++P +L +     I+V+
Sbjct:  818 PITMIDAQAGMIQKISCDTPHLSMQLSCHMLEGTICNLVEHCGSARGRISSCLFEHNIARATEDMIPNVLPIISKPEIYVL 898          
BLAST of mRNA_H-elongata_contig72870.14970.1 vs. uniprot
Match: A0A6G0XXD1_9STRA (Lipase_3 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XXD1_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 4.140e-14
Identity = 31/61 (50.82%), Postives = 46/61 (75.41%), Query Frame = 1
Query:   22 PLSLSSTQVGLIQLISCSTAGKALQLSCHMLEGTICDIVRHCGDDRGRFTDCKFEYNMAHL 204
            P+++  TQ GLIQ I+C T   ++QLSCHM++GT+C+++ HCGDDR RF  C+FE+ +  L
Sbjct:  731 PITMIDTQSGLIQRITCDTPHLSMQLSCHMIQGTLCNLLHHCGDDRARFATCQFEHRITSL 791          
BLAST of mRNA_H-elongata_contig72870.14970.1 vs. uniprot
Match: A0A485KXN8_9STRA (Aste57867_12985 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KXN8_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 4.140e-14
Identity = 32/65 (49.23%), Postives = 48/65 (73.85%), Query Frame = 1
Query:   22 PLSLSSTQVGLIQLISCSTAGKALQLSCHMLEGTICDIVRHCGDDRGRFTDCKFEYNMAHLLPQL 216
            P+++  +Q GLIQ I+C T   ++QLSCHM++GT+C+++ HCGDDRGRF  C+FE+ +  L   L
Sbjct:  733 PITMVDSQSGLIQRITCDTPHLSMQLSCHMIQGTLCNLLDHCGDDRGRFAACEFEHRITSLTEDL 797          
BLAST of mRNA_H-elongata_contig72870.14970.1 vs. uniprot
Match: A0A1V9Y4V9_9STRA (Transmembrane protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y4V9_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 5.650e-14
Identity = 36/95 (37.89%), Postives = 63/95 (66.32%), Query Frame = 1
Query:   22 PLSLSSTQVGLIQLISCSTAGKALQLSCHMLEGTICDIVRHCGDDRGRFTDCKFEYNMAHLLPQLLKLAQGKMIWVMGVAALILIIATLVILPEF 306
            P+++  TQ GLIQ I+C ++  ++QLSCHM EGT+C++V+HCGD RGRF  C FE+ ++ L   L ++    ++    ++ L++++A +  L  +
Sbjct:  739 PITMIDTQSGLIQRITCDSSHLSMQLSCHMNEGTLCNLVQHCGDHRGRFAACDFEHRVSTLSEDLFEMVFVDLVAPTTLSGLMILVAIIFSLVRY 833          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72870.14970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHF5_ECTSI5.980e-3470.79Lipase_3 domain-containing protein n=1 Tax=Ectocar... [more]
A0A7S2V565_9STRA3.340e-2144.68Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3XTY2_HETAK3.780e-1742.55Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6A5ACD0_9STRA7.200e-1652.46Lipase_3 domain-containing protein n=1 Tax=Aphanom... [more]
A0A5D6XN61_9STRA1.200e-1442.70Lipase_3 domain-containing protein n=1 Tax=Pythium... [more]
K3WLR8_GLOUD1.630e-1452.17Lipase_3 domain-containing protein n=1 Tax=Globisp... [more]
A0A3M6VSC6_9STRA2.250e-1445.68Lipase_3 domain-containing protein n=1 Tax=Peronos... [more]
A0A6G0XXD1_9STRA4.140e-1450.82Lipase_3 domain-containing protein n=1 Tax=Aphanom... [more]
A0A485KXN8_9STRA4.140e-1449.23Aste57867_12985 protein n=1 Tax=Aphanomyces stella... [more]
A0A1V9Y4V9_9STRA5.650e-1437.89Transmembrane protein n=1 Tax=Achlya hypogyna TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72870contigH-elongata_contig72870:2301..2901 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.4
Seed ortholog evalue3e-29
Seed eggNOG ortholog2880.D8LHF5
KEGG rclassRC00020,RC00037,RC00041,RC00094
KEGG koko:K17900
KEGG ReactionR02250,R02687
KEGG Pathwayko00561,ko01100,ko04138,map00561,map01100,map04138
KEGG ModuleM00098
EggNOG free text desc.Lipase (class 3)
EggNOG OGs2DUDU@1,2QVZS@2759
EC3.1.1.3
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03029,ko04131
Hectar predicted targeting categorysignal anchor
Exons2
Model size315
Cds size315
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931131.0981414-CDS-H-elongata_contig72870:2300..24571622931131.0981414-CDS-H-elongata_contig72870:2300..2457Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72870 2301..2457 -
1691679710.8717563-CDS-H-elongata_contig72870:2300..24571691679710.8717563-CDS-H-elongata_contig72870:2300..2457Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72870 2301..2457 -
1622931131.1139205-CDS-H-elongata_contig72870:2743..29011622931131.1139205-CDS-H-elongata_contig72870:2743..2901Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72870 2744..2901 -
1691679710.8878102-CDS-H-elongata_contig72870:2743..29011691679710.8878102-CDS-H-elongata_contig72870:2743..2901Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72870 2744..2901 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72870.14970.1prot_H-elongata_contig72870.14970.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig72870 2301..2901 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig72870.14970.1

>prot_H-elongata_contig72870.14970.1 ID=prot_H-elongata_contig72870.14970.1|Name=mRNA_H-elongata_contig72870.14970.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
TCTLRSRPLSLSSTQVGLIQLISCSTAGKALQLSCHMLEGTICDIVRHCG
DDRGRFTDCKFEYNMAHLLPQLLKLAQGKMIWVMGVAALILIIATLVILP
EFLV*
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mRNA from alignment at H-elongata_contig72870:2301..2901-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig72870.14970.1 ID=mRNA_H-elongata_contig72870.14970.1|Name=mRNA_H-elongata_contig72870.14970.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=601bp|location=Sequence derived from alignment at H-elongata_contig72870:2301..2901- (Himanthalia elongata Himel1 dioecious)
ACGTGTACGTTACGCTCGAGGCCTCTCTCATTGTCGTCGACGCAGGTGGG GCTGATCCAGCTGATTTCGTGCAGCACGGCGGGCAAGGCGCTGCAGCTGA GTTGTCACATGCTCGAGGGCACCATCTGCGACATCGTGCGGCACTGTGGA GACGACAGGTCTGTCGGGGTTTTCATCAAACGGAAATCTCTCTGATGATA ACTGTAGCAACAGCAGCACGCGAAACGCTAGAGTTACCCCGGTTAGCACG ATGCTTTGTTCGGGGTTTTATCAGTGAGGCTGGCGTAGAAGGCAAACGCA ACTTTGCGTGATACTGCGTGGCCACGATGCCTTGGGAAGCGCAGGGTGCT AGAGAGAAGCTTTTGGGTTTTGAGAACACGGAATGCCCCCCCCCCCCTCT CTCTCTCTCTCCCGGGATCTCCTATCCATATGCGTTTCGGACAGGGGGAG GTTCACGGACTGCAAGTTCGAGTACAACATGGCCCACCTCTTGCCTCAGC TGCTGAAGCTTGCGCAGGGCAAGATGATCTGGGTTATGGGCGTGGCGGCG CTGATCCTCATCATAGCTACCCTCGTCATCCTTCCAGAGTTCCTGGTCTA G
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Coding sequence (CDS) from alignment at H-elongata_contig72870:2301..2901-

>mRNA_H-elongata_contig72870.14970.1 ID=mRNA_H-elongata_contig72870.14970.1|Name=mRNA_H-elongata_contig72870.14970.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig72870:2301..2901- (Himanthalia elongata Himel1 dioecious)
ACGTGTACGTTACGCTCGAGGCCTCTCTCATTGTCGTCGACGCAGGTGGG
GCTGATCCAGCTGATTTCGTGCAGCACGGCGGGCAAGGCGCTGCAGCTGA
GTTGTCACATGCTCGAGGGCACCATCTGCGACATCGTGCGGCACTGTGGA
GACGACAGACGTGTACGTTACGCTCGAGGCCTCTCTCATTGTCGTCGACG
CAGGTGGGGCTGATCCAGCTGATTTCGTGCAGCACGGCGGGCAAGGCGCT
GCAGCTGAGTTGTCACATGCTCGAGGGCACCATCTGCGACATCGTGCGGC
ACTGTGGAGACGACAGGGGGAGGTTCACGGACTGCAAGTTCGAGTACAAC
ATGGCCCACCTCTTGCCTCAGCTGCTGAAGCTTGCGCAGGGCAAGATGAT
CTGGGTTATGGGCGTGGCGGCGCTGATCCTCATCATAGCTACCCTCGTCA
TCCTTCCAGAGTTCCTGGTCTAGGGGGAGGTTCACGGACTGCAAGTTCGA
GTACAACATGGCCCACCTCTTGCCTCAGCTGCTGAAGCTTGCGCAGGGCA
AGATGATCTGGGTTATGGGCGTGGCGGCGCTGATCCTCATCATAGCTACC
CTCGTCATCCTTCCAGAGTTCCTGGTCTAG
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