mRNA_H-elongata_contig72868.14968.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig72868.14968.1 vs. uniprot
Match: D8LE56_ECTSI (TFIIS-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE56_ECTSI) HSP 1 Score: 178 bits (452), Expect = 1.680e-54 Identity = 83/107 (77.57%), Postives = 95/107 (88.79%), Query Frame = 1
Query: 1 NIMYPKESKAERKLMFACSRCTFQEAAESGCCVYRNNIIPTVGNKLDIVQTDVIDDPTLQRSKNAICEKCNYNEAVFFQADEVRRHEQLLSLIFVCTNRGCGHKWVS 321
NIM+PKE+K +RKLM++C+RC ++E A+SG CVYRNN+I T GNKLDIVQTDV+DDPTLQRSKNAICEKCNYNEAVFFQADE + Q LSLIFVCTNR CGHKWVS
Sbjct: 132 NIMHPKENKTDRKLMYSCNRCKYEEDAQSGSCVYRNNLITTAGNKLDIVQTDVVDDPTLQRSKNAICEKCNYNEAVFFQADEGAK-SQSLSLIFVCTNRACGHKWVS 237
BLAST of mRNA_H-elongata_contig72868.14968.1 vs. uniprot
Match: A0A835YYP5_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYP5_9STRA) HSP 1 Score: 124 bits (310), Expect = 1.400e-34 Identity = 60/106 (56.60%), Postives = 79/106 (74.53%), Query Frame = 1
Query: 1 NIMYPKESKAERKLMFACSRCTFQEAAESGCCVYRNNIIPTVGNKLDIVQTDVIDDPTLQRSKNAICEKCNYNEAVFFQADEVRRHEQLLSLIFVCTNRGCGHKWV 318
NI++PKE++ R L +AC+RC ++E A C VY NN++ T KLDIV DV++DPTLQRSK+ IC++CNY+EAVFFQAD+ + L SLIFVCT+ CG KWV
Sbjct: 9 NILHPKENRTTRTLFYACNRCAYREEAGQSC-VYENNLVKTTELKLDIVHEDVVNDPTLQRSKHQICDRCNYSEAVFFQADDSAKSSSL-SLIFVCTH--CGKKWV 110
BLAST of mRNA_H-elongata_contig72868.14968.1 vs. uniprot
Match: A0A2I4F1N3_JUGRE (DNA-directed RNA polymerase subunit n=38 Tax=Magnoliopsida TaxID=3398 RepID=A0A2I4F1N3_JUGRE) HSP 1 Score: 107 bits (267), Expect = 5.260e-28 Identity = 53/105 (50.48%), Postives = 72/105 (68.57%), Query Frame = 1
Query: 1 NIMYPKESKAERKLMFACSRCTFQEAAESGCCVYRNNIIPTVGNKLDIVQTDVIDDPTLQRSKNAICEKCNYNEAVFFQADEVRRHEQLLSLIFVCTNRGCGHKW 315
NI+YPKE K ++ L++AC C QEAA++ C VYRN I +VG + ++Q DV DPTL R+K+ C +CN+ EAVFFQA R E+ ++L FVC N CGH+W
Sbjct: 12 NILYPKEDKEQKILLYACRNCDHQEAADNNC-VYRNEIHHSVGERTQVLQ-DVAADPTLPRTKSVRCAECNHGEAVFFQA--TARGEEGMTLFFVCCNPNCGHRW 112
BLAST of mRNA_H-elongata_contig72868.14968.1 vs. uniprot
Match: B8BUI2_THAPS (DNA-directed RNA polymerase subunit n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BUI2_THAPS) HSP 1 Score: 105 bits (262), Expect = 2.860e-27 Identity = 54/107 (50.47%), Postives = 72/107 (67.29%), Query Frame = 1
Query: 1 NIMYPKESKAERKLMFACSRCTFQEAAESGCCVYRNNIIPTVGNKLDIVQTDVIDDPTLQRSKNAICEKCNYNEAVFFQADEVRRHEQLLSLIFVCTNRGCGHKWVS 321
+++YPKE++ ERKL++AC C + E A G +Y+N + VGN L V + V DDPTL RS+NA C+KC +NEAVFFQ+D L+LIFVC N C HKWV+
Sbjct: 9 SMLYPKENRNERKLLYACRLCRYTEYAP-GQLIYQNILKKEVGNVLHTVPSAVSDDPTLPRSQNAHCDKCGHNEAVFFQSDTSDVRNDTLALIFVCCN--CDHKWVA 112
BLAST of mRNA_H-elongata_contig72868.14968.1 vs. uniprot
Match: A0A0B2PYX4_GLYSO (DNA-directed RNA polymerase subunit n=2 Tax=Glycine subgen. Soja TaxID=1462606 RepID=A0A0B2PYX4_GLYSO) HSP 1 Score: 105 bits (261), Expect = 4.290e-27 Identity = 52/105 (49.52%), Postives = 71/105 (67.62%), Query Frame = 1
Query: 1 NIMYPKESKAERKLMFACSRCTFQEAAESGCCVYRNNIIPTVGNKLDIVQTDVIDDPTLQRSKNAICEKCNYNEAVFFQADEVRRHEQLLSLIFVCTNRGCGHKW 315
NI+YPKE + ++ L+FAC C QE A++ C VYRN I +VG + ++Q DV DPTL R+K+ C +CN+ EAVFFQA R E+ ++L FVC N CGH+W
Sbjct: 12 NILYPKEDRDQKVLLFACRNCDHQEVADNFC-VYRNEIHHSVGERTQVLQ-DVAADPTLPRTKSVRCSQCNHGEAVFFQA--TARGEEGMTLFFVCCNPNCGHRW 112
BLAST of mRNA_H-elongata_contig72868.14968.1 vs. uniprot
Match: UPI00192A156F (DNA-directed RNA polymerases II, IV and V subunit 9A-like n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI00192A156F) HSP 1 Score: 105 bits (261), Expect = 4.290e-27 Identity = 51/105 (48.57%), Postives = 69/105 (65.71%), Query Frame = 1
Query: 1 NIMYPKESKAERKLMFACSRCTFQEAAESGCCVYRNNIIPTVGNKLDIVQTDVIDDPTLQRSKNAICEKCNYNEAVFFQADEVRRHEQLLSLIFVCTNRGCGHKW 315
NI+YPKE+K ++ L+FAC C QE + C VYRN ++ +VG + ++Q DV DPTL R+K C KCN+ E VFFQA R E+ ++L FVC N CGH+W
Sbjct: 12 NILYPKENKEQKTLLFACRNCEHQEISNDNC-VYRNEVLHSVGERTQVLQ-DVAADPTLPRTKTIRCTKCNHPEVVFFQA--AARGEEGMTLFFVCCNPDCGHRW 112
BLAST of mRNA_H-elongata_contig72868.14968.1 vs. uniprot
Match: I1MGG3_SOYBN (DNA-directed RNA polymerase subunit n=3 Tax=Pentapetalae TaxID=1437201 RepID=I1MGG3_SOYBN) HSP 1 Score: 104 bits (259), Expect = 8.630e-27 Identity = 52/105 (49.52%), Postives = 70/105 (66.67%), Query Frame = 1
Query: 1 NIMYPKESKAERKLMFACSRCTFQEAAESGCCVYRNNIIPTVGNKLDIVQTDVIDDPTLQRSKNAICEKCNYNEAVFFQADEVRRHEQLLSLIFVCTNRGCGHKW 315
NI+YPKE + ++ L+FAC C QE A++ C VYRN I VG + ++Q DV DPTL R+K+ C +CN+ EAVFFQA R E+ ++L FVC N CGH+W
Sbjct: 12 NILYPKEDREQKVLLFACRNCDHQEVADNFC-VYRNEIQHPVGERTQVLQ-DVAADPTLPRTKSVRCTQCNHGEAVFFQA--TARGEEGMTLFFVCCNPNCGHRW 112
BLAST of mRNA_H-elongata_contig72868.14968.1 vs. uniprot
Match: A0A8B7CCB1_PHODC (DNA-directed RNA polymerase subunit n=3 Tax=Arecaceae TaxID=4710 RepID=A0A8B7CCB1_PHODC) HSP 1 Score: 104 bits (259), Expect = 8.630e-27 Identity = 52/105 (49.52%), Postives = 72/105 (68.57%), Query Frame = 1
Query: 1 NIMYPKESKAERKLMFACSRCTFQEAAESGCCVYRNNIIPTVGNKLDIVQTDVIDDPTLQRSKNAICEKCNYNEAVFFQADEVRRHEQLLSLIFVCTNRGCGHKW 315
NI+YPKE K ++ L+FAC C ++E A+S C VYRN + VG + I+Q DV +DPTL R+K+ C KC++ EAVFFQA R E+ ++L FVC N CG++W
Sbjct: 12 NILYPKEDKQKKILLFACRNCDYEEVADSFC-VYRNEVHHAVGERTQILQ-DVANDPTLPRTKDVRCVKCDHPEAVFFQASS--RGEEGMTLFFVCCNPACGYRW 112
BLAST of mRNA_H-elongata_contig72868.14968.1 vs. uniprot
Match: A0A6P5Z8D8_DURZI (DNA-directed RNA polymerase subunit n=2 Tax=Malvaceae TaxID=3629 RepID=A0A6P5Z8D8_DURZI) HSP 1 Score: 103 bits (258), Expect = 1.220e-26 Identity = 51/105 (48.57%), Postives = 68/105 (64.76%), Query Frame = 1
Query: 1 NIMYPKESKAERKLMFACSRCTFQEAAESGCCVYRNNIIPTVGNKLDIVQTDVIDDPTLQRSKNAICEKCNYNEAVFFQADEVRRHEQLLSLIFVCTNRGCGHKW 315
NI+YPKE + ++ L++AC C QE AE C VYRN + + G + I+Q DV DPTL R+K+ IC C + EAVFFQA R E+ ++L FVC N CGH+W
Sbjct: 12 NILYPKEDREQKILLYACRNCDHQEVAEDNC-VYRNEVHHSAGERTQILQ-DVAADPTLPRTKSVICANCKHGEAVFFQA--TARGEEGMTLFFVCCNPNCGHRW 112
BLAST of mRNA_H-elongata_contig72868.14968.1 vs. uniprot
Match: A0A843UFX2_COLES (TFIIS-type domain-containing protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843UFX2_COLES) HSP 1 Score: 107 bits (267), Expect = 1.400e-26 Identity = 53/105 (50.48%), Postives = 71/105 (67.62%), Query Frame = 1
Query: 1 NIMYPKESKAERKLMFACSRCTFQEAAESGCCVYRNNIIPTVGNKLDIVQTDVIDDPTLQRSKNAICEKCNYNEAVFFQADEVRRHEQLLSLIFVCTNRGCGHKW 315
NI+YPKE + ++ L++AC C QE A++ C VYRN I +VG + ++Q DV DPTL R+KN C KCN+ EAVFFQA R E+ ++L FVC N CGH+W
Sbjct: 138 NILYPKEDREQKILLYACRNCDHQEVADNNC-VYRNEIHHSVGERTQVLQ-DVAADPTLPRTKNVRCAKCNHPEAVFFQA--AARGEEGMTLFFVCCNPSCGHRW 238 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72868.14968.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig72868.14968.1 >prot_H-elongata_contig72868.14968.1 ID=prot_H-elongata_contig72868.14968.1|Name=mRNA_H-elongata_contig72868.14968.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp MYPKESKAERKLMFACSRCTFQEAAESGCCVYRNNIIPTVGNKLDIVQTDback to top mRNA from alignment at H-elongata_contig72868:950..1908- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig72868.14968.1 ID=mRNA_H-elongata_contig72868.14968.1|Name=mRNA_H-elongata_contig72868.14968.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=959bp|location=Sequence derived from alignment at H-elongata_contig72868:950..1908- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig72868:950..1908- >mRNA_H-elongata_contig72868.14968.1 ID=mRNA_H-elongata_contig72868.14968.1|Name=mRNA_H-elongata_contig72868.14968.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig72868:950..1908- (Himanthalia elongata Himel1 dioecious)back to top |