mRNA_H-elongata_contig72859.14967.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig72859.14967.1
Unique NamemRNA_H-elongata_contig72859.14967.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig72859.14967.1 vs. uniprot
Match: D8LMJ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMJ7_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 1.210e-26
Identity = 50/64 (78.12%), Postives = 57/64 (89.06%), Query Frame = 1 
Query:    1 GSSVCLALERIGGASRVVLFCHGTSSDLGMSRRSLETLRDGLESHVVAVEYPGYGLTAKEEPSE 192
            GSSVCLALERIGGAS+V+LFCHGTSSDLGM+RRSLETL D L+ HV+ VEYPGYGL A +E +E
Sbjct:   57 GSSVCLALERIGGASKVLLFCHGTSSDLGMTRRSLETLGDMLDCHVIGVEYPGYGLMAHDESNE 120
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BLAST of mRNA_H-elongata_contig72859.14967.1 vs. uniprot
Match: A0A6H5KBU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU0_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.280e-23
Identity = 48/64 (75.00%), Postives = 55/64 (85.94%), Query Frame = 1 
Query:    1 GSSVCLALERIGGASRVVLFCHGTSSDLGMSRRSLETLRDGLESHVVAVEYPGYGLTAKEEPSE 192
            GSSVCLALER GGAS+V+LFCHGTSSDLGM+RRSLETL D L+ HV+ VEYPGYGL   +E +E
Sbjct:   57 GSSVCLALERNGGASKVLLFCHGTSSDLGMTRRSLETLGDMLDCHVIGVEYPGYGLMTHDESNE 120
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BLAST of mRNA_H-elongata_contig72859.14967.1 vs. uniprot
Match: A0A1R2AMS1_9CILI (Uncharacterized protein n=2 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2AMS1_9CILI)

HSP 1 Score: 59.3 bits (142), Expect = 9.060e-9
Identity = 24/52 (46.15%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:   13 CLALERIGGASRVVLFCHGTSSDLGMSRRSLETLRDGLESHVVAVEYPGYGL 168
            C  L+ + G+S+VV++ HG + DLG+S   ++ LR  L  H++AVEYPGYG+
Sbjct:   38 CFLLQYLEGSSKVVIYFHGNAEDLGLSYEIIDMLRTVLHVHILAVEYPGYGV 89
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BLAST of mRNA_H-elongata_contig72859.14967.1 vs. uniprot
Match: A0A6A7G9Q5_9CRUS (Alpha/beta superfamily hydrolase n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7G9Q5_9CRUS)

HSP 1 Score: 58.5 bits (140), Expect = 2.140e-8
Identity = 25/54 (46.30%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:   13 CLALERIGGASRVVLFCHGTSSDLGMSRRSLETLRDGLESHVVAVEYPGYGLTA 174
            CL L     + R++L+ HG   DLG + R +  LRD L+ HV+A+EYPGYG+ A
Sbjct:   62 CLWLPYHRPSKRIILYGHGNGEDLGNTHRFIRMLRDNLKCHVLAIEYPGYGINA 115
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BLAST of mRNA_H-elongata_contig72859.14967.1 vs. uniprot
Match: A0A7S3IIT9_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidium inclinatum TaxID=197538 RepID=A0A7S3IIT9_9SPIT)

HSP 1 Score: 56.6 bits (135), Expect = 3.120e-8
Identity = 26/62 (41.94%), Postives = 38/62 (61.29%), Query Frame = 1 
Query:   13 CLALERIGGASRVVLFCHGTSSDLGMSRRSLETLRDGLESHVVAVEYPGYGLTAKEEPSEDR 198
            CL L    GAS+++L+ HG + D+G++   L  +   L+ HV+AVEYPGYGL     P E +
Sbjct:   54 CLFLPHDDGASKLLLYFHGNAEDIGLAFDLLYIVGQNLKMHVMAVEYPGYGLYKSSGPDEQQ 115
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BLAST of mRNA_H-elongata_contig72859.14967.1 vs. uniprot
Match: J9G921_9SPIT (Hydrolase of the alpha/beta superfamily n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9G921_9SPIT)

HSP 1 Score: 57.4 bits (137), Expect = 4.980e-8
Identity = 21/52 (40.38%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   13 CLALERIGGASRVVLFCHGTSSDLGMSRRSLETLRDGLESHVVAVEYPGYGL 168
            CL L  + G+++++++ HG + DLG++   L+ L++ L+ HV+A+EYPGYG+
Sbjct:   54 CLYLPYLQGSNKLIIYFHGNAEDLGLAYELLDHLKNSLKVHVLAIEYPGYGI 105
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BLAST of mRNA_H-elongata_contig72859.14967.1 vs. uniprot
Match: A0A7S3N3T1_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidium inclinatum TaxID=197538 RepID=A0A7S3N3T1_9SPIT)

HSP 1 Score: 57.4 bits (137), Expect = 5.440e-8
Identity = 26/62 (41.94%), Postives = 39/62 (62.90%), Query Frame = 1 
Query:   13 CLALERIGGASRVVLFCHGTSSDLGMSRRSLETLRDGLESHVVAVEYPGYGLTAKEEPSEDR 198
            CL L    G ++VV++ HG + D+G++   L      +E HV+AVEYPGYGL    +P+ED+
Sbjct:  151 CLYLPYEEGGNKVVIYFHGNAEDIGLAFDLLYLFGQRMEMHVLAVEYPGYGLYKTSKPNEDQ 212
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BLAST of mRNA_H-elongata_contig72859.14967.1 vs. uniprot
Match: A0A1R2CTD4_9CILI (FSH1 domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2CTD4_9CILI)

HSP 1 Score: 57.0 bits (136), Expect = 6.300e-8
Identity = 25/60 (41.67%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:   13 CLALERIGGASRVVLFCHGTSSDLGMSRRSLETLRDGLESHVVAVEYPGYGLTAKEEPSE 192
            CL L    G+S+V+L+ HG + D+G++   ++ LR  L  HV+A+EYPGYG+   E  +E
Sbjct:   40 CLYLSCARGSSKVMLYFHGNAEDIGLAYELMDHLRSTLMVHVIAMEYPGYGIYPGESDAE 99
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BLAST of mRNA_H-elongata_contig72859.14967.1 vs. uniprot
Match: A0A1R2CQM4_9CILI (Uncharacterized protein n=2 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2CQM4_9CILI)

HSP 1 Score: 56.6 bits (135), Expect = 8.590e-8
Identity = 22/52 (42.31%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:   13 CLALERIGGASRVVLFCHGTSSDLGMSRRSLETLRDGLESHVVAVEYPGYGL 168
            C  L+ + G+S+++L+ HG + DLG+S   ++ LR  L  H++A+EYPGYG+
Sbjct:   38 CFLLQYMEGSSKLMLYFHGNAEDLGLSYEIIDMLRAVLHIHILAIEYPGYGV 89
[Close]
BLAST of mRNA_H-elongata_contig72859.14967.1 vs. uniprot
Match: A0A1R2BC82_9CILI (Hydrolase_4 domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2BC82_9CILI)

HSP 1 Score: 56.2 bits (134), Expect = 1.180e-7
Identity = 24/52 (46.15%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:   13 CLALERIGGASRVVLFCHGTSSDLGMSRRSLETLRDGLESHVVAVEYPGYGL 168
            CL L    G+S+V+L+ HG + D+G++   ++ LR  L  HV+AVEYPGYG+
Sbjct:   40 CLYLSCPRGSSKVLLYFHGNAEDIGLTYELMDHLRSTLMVHVIAVEYPGYGI 91
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72859.14967.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMJ7_ECTSI1.210e-2678.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KBU0_9PHAE1.280e-2375.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1R2AMS1_9CILI9.060e-946.15Uncharacterized protein n=2 Tax=Stentor coeruleus ... [more]
A0A6A7G9Q5_9CRUS2.140e-846.30Alpha/beta superfamily hydrolase n=1 Tax=Hirondell... [more]
A0A7S3IIT9_9SPIT3.120e-841.94Hypothetical protein (Fragment) n=1 Tax=Strombidiu... [more]
J9G921_9SPIT4.980e-840.38Hydrolase of the alpha/beta superfamily n=1 Tax=Ox... [more]
A0A7S3N3T1_9SPIT5.440e-841.94Hypothetical protein (Fragment) n=1 Tax=Strombidiu... [more]
A0A1R2CTD4_9CILI6.300e-841.67FSH1 domain-containing protein n=1 Tax=Stentor coe... [more]
A0A1R2CQM4_9CILI8.590e-842.31Uncharacterized protein n=2 Tax=Stentor coeruleus ... [more]
A0A1R2BC82_9CILI1.180e-746.15Hydrolase_4 domain-containing protein n=1 Tax=Sten... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72859contigH-elongata_contig72859:393..1408 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.9
Seed ortholog evalue7.4e-21
Seed eggNOG ortholog2880.D8LMJ7
EggNOG free text desc.palmitoyl-(protein) hydrolase activity
EggNOG OGsCOG1073@1,KOG1552@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size201
Cds size201
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931130.8846824-CDS-H-elongata_contig72859:392..4871622931130.8846824-CDS-H-elongata_contig72859:392..487Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72859 393..487 +
1691679710.7988422-CDS-H-elongata_contig72859:392..4871691679710.7988422-CDS-H-elongata_contig72859:392..487Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72859 393..487 +
1622931130.9017897-CDS-H-elongata_contig72859:1302..14081622931130.9017897-CDS-H-elongata_contig72859:1302..1408Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72859 1303..1408 +
1691679710.8085542-CDS-H-elongata_contig72859:1302..14081691679710.8085542-CDS-H-elongata_contig72859:1302..1408Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72859 1303..1408 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72859.14967.1prot_H-elongata_contig72859.14967.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig72859 393..1408 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig72859.14967.1

>prot_H-elongata_contig72859.14967.1 ID=prot_H-elongata_contig72859.14967.1|Name=mRNA_H-elongata_contig72859.14967.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
GSSVCLALERIGGASRVVLFCHGTSSDLGMSRRSLETLRDGLESHVVAVE
YPGYGLTAKEEPSEDR*
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mRNA from alignment at H-elongata_contig72859:393..1408+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig72859.14967.1 ID=mRNA_H-elongata_contig72859.14967.1|Name=mRNA_H-elongata_contig72859.14967.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1016bp|location=Sequence derived from alignment at H-elongata_contig72859:393..1408+ (Himanthalia elongata Himel1 dioecious)
GGCTCTTCGGTCTGTCTGGCGCTGGAGCGAATCGGCGGAGCCTCGAGGGT
GGTGCTCTTCTGCCACGGCACGTCGTCTGACCTGGGCATGTCTAGGTCCG
TGCCTTCTTGCTTGTGTGACTACATTTCCTTCCCCCCTGTGGAGTGGAAT
GCTTAGAGTATAGAGCATATAGTATACAGCATAGAGTATATAGTATATAG
TATATAATATATGCGATATAGTATAGAGTATATATCATGTAATATAAAGG
ATAGAATATAGGTCTACATTGCTAGAGGCTAATAATAAAGCTATGTGTCG
GGCATACAATACTCCAAAATACATGCCGGTGTAGGTTATCTACTACTCTG
AAACCAAATGAAATTAAACGAATCGAAACGCGGGGAGTTTTTCATGTGTG
TGTGTGTTTTCTTTAAAACATATTAGCTAATTCAAACTCTACGAACATTC
ACGCCTTCTTAGCACCGTGAGAGGTGTTTTTTGTTTTTTATTGATTGATC
GATTGATTCCAACTTTTTACGTATTGTCCTTGCGCTACAGTATAGTATAG
AGTATAGTATAGAGTATAGTATAGAGTATTGTATAGAGTATAGTACAGTA
TAGTATAGTATAGTATAGAAAAGTATAGTATAGTATAGTATGGTATAGTA
TATTATATTATGGTATGATATACTATAGCATAGTATAGTATAGTATAGTA
TATTATGGAATAATATACTATAGCATAGTATAGTATAGTATAGTATATTA
TGGTATAATATACTATAGCATAGTATAGTACAGTATAGTGTAGTATAGTA
TATTATGGTATAATATACTATAGCATAGTATAGTATAGAACTGAAGAAAT
TCGGTTACACAACTCCGTGAGTCATACGTCCACGACTCCGCCTCGTGTGC
GTGCCGGCAGGCGGAGCCTTGAAACCCTCCGCGACGGCCTCGAGAGCCAT
GTGGTGGCTGTGGAATACCCCGGTTACGGCCTGACGGCAAAAGAGGAGCC
GAGCGAGGACAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig72859:393..1408+

>mRNA_H-elongata_contig72859.14967.1 ID=mRNA_H-elongata_contig72859.14967.1|Name=mRNA_H-elongata_contig72859.14967.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig72859:393..1408+ (Himanthalia elongata Himel1 dioecious)
GGCTCTTCGGTCTGTCTGGCGCTGGAGCGAATCGGCGGAGCCTCGAGGGT
GGTGCTCTTCTGCCACGGCACGTCGTCTGACCTGGGCATGTCTAGGGCTC
TTCGGTCTGTCTGGCGCTGGAGCGAATCGGCGGAGCCTCGAGGGTGGTGC
TCTTCTGCCACGGCACGTCGTCTGACCTGGGCATGTCTAGGCGGAGCCTT
GAAACCCTCCGCGACGGCCTCGAGAGCCATGTGGTGGCTGTGGAATACCC
CGGTTACGGCCTGACGGCAAAAGAGGAGCCGAGCGAGGACAGGTGAGCGG
AGCCTTGAAACCCTCCGCGACGGCCTCGAGAGCCATGTGGTGGCTGTGGA
ATACCCCGGTTACGGCCTGACGGCAAAAGAGGAGCCGAGCGAGGACAGGT
GA
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