mRNA_H-elongata_contig72842.14965.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig72842.14965.1
Unique NamemRNA_H-elongata_contig72842.14965.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig72842.14965.1 vs. uniprot
Match: UPI001EE58B6C (CARD- and ANK-domain containing inflammasome adapter protein-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE58B6C)

HSP 1 Score: 53.5 bits (127), Expect = 9.360e-5
Identity = 34/105 (32.38%), Postives = 53/105 (50.48%), Query Frame = 1 
Query:    1 HSEVMNVLAAGAAIAVLRDRNPNPNGSTLLHAVACGGNVRILTALVAVDCGCEDDIDVQESQFPNSTPLLCAIWYGHRNMTEALIAAGADPRKADARSQTALHLA 315
            HS+++ +L    A  +LRD +    G  +LH    GG+VR +  L++     +D + V      N+TP++ A  YGHR++ E L   GAD    D+     LH A
Sbjct:   69 HSDIVALLVEKRADLLLRDLD----GKNVLHYACRGGDVRTVQFLLS-----QDGVQVNSEDVGNTTPVMDAARYGHRDIVELLAKKGADLSLRDSDGNNVLHHA 164
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72842.14965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001EE58B6C9.360e-532.38CARD- and ANK-domain containing inflammasome adapt... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72842contigH-elongata_contig72842:787..1900 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size768
Cds size756
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72842.14965.1prot_H-elongata_contig72842.14965.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig72842 799..1900 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931130.77005-UTR-H-elongata_contig72842:786..7981622931130.77005-UTR-H-elongata_contig72842:786..798Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig72842 787..798 +
1691679710.7572968-UTR-H-elongata_contig72842:786..7981691679710.7572968-UTR-H-elongata_contig72842:786..798Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig72842 787..798 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931130.7829995-CDS-H-elongata_contig72842:798..14881622931130.7829995-CDS-H-elongata_contig72842:798..1488Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72842 799..1488 +
1691679710.765638-CDS-H-elongata_contig72842:798..14881691679710.765638-CDS-H-elongata_contig72842:798..1488Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72842 799..1488 +
1622931130.7947772-CDS-H-elongata_contig72842:1834..19001622931130.7947772-CDS-H-elongata_contig72842:1834..1900Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72842 1835..1900 +
1691679710.775528-CDS-H-elongata_contig72842:1834..19001691679710.775528-CDS-H-elongata_contig72842:1834..1900Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72842 1835..1900 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig72842.14965.1

>prot_H-elongata_contig72842.14965.1 ID=prot_H-elongata_contig72842.14965.1|Name=mRNA_H-elongata_contig72842.14965.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=252bp
MNVLAAGAAIAVLRDRNPNPNGSTLLHAVACGGNVRILTALVAVDCGCED
DIDVQESQFPNSTPLLCAIWYGHRNMTEALIAAGADPRKADARSQTALHL
ASIRGHCSILSDLLKMGLDIEARNDQEYTPLACAVASGKVNALKLLLDAG
ASTQTRTASMLRVLDIAVKEGRIRCLRVLLAARVNPEEIDQVGLTALLAA
TRTSNIAAIAALIDAGADMEGRGGTMWTPLHFACQQGDVSVIDALIVRGG
NV
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mRNA from alignment at H-elongata_contig72842:787..1900+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig72842.14965.1 ID=mRNA_H-elongata_contig72842.14965.1|Name=mRNA_H-elongata_contig72842.14965.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1114bp|location=Sequence derived from alignment at H-elongata_contig72842:787..1900+ (Himanthalia elongata Himel1 dioecious)
CACAGCGAAGTAATGAATGTTCTCGCTGCAGGAGCGGCGATCGCTGTCCT
TCGAGACCGCAATCCCAACCCCAACGGGTCTACCCTTCTCCACGCCGTTG
CTTGCGGTGGGAATGTTCGAATACTAACGGCCTTAGTAGCCGTTGATTGC
GGCTGTGAGGACGACATCGACGTGCAGGAGTCCCAGTTCCCGAACAGCAC
ACCCTTGCTTTGTGCAATATGGTACGGGCATCGGAACATGACCGAGGCCT
TGATTGCGGCCGGAGCGGATCCTAGGAAGGCGGATGCTCGAAGTCAGACC
GCGCTTCACCTGGCTAGCATCCGCGGCCACTGCAGCATCCTTTCCGACCT
CCTCAAGATGGGACTGGATATCGAAGCCCGAAATGACCAAGAATACACCC
CGTTGGCATGCGCCGTCGCCAGTGGAAAGGTTAACGCGTTAAAGCTTTTG
CTTGATGCGGGAGCATCGACTCAGACCAGGACAGCGAGCATGCTGCGGGT
ACTGGACATCGCGGTCAAGGAAGGTCGCATCCGCTGCTTGCGGGTACTGC
TGGCTGCAAGGGTTAATCCCGAGGAGATTGACCAGGTTGGCCTGACGGCA
TTGCTTGCAGCCACTCGTACGAGCAACATTGCAGCCATCGCTGCGCTGAT
CGACGCAGGGGCGGATATGGAGGGCCGTGGTGGAACTATGTGGACGCCAC
TGGTGAGTTTAGGGCACATTAGGTGCGGTTAGAATGTTGTGGCACCGGCC
GCTACACGTTACGTACTGAATCGTTATTGTAACCGTTTTGAGGCCGAACC
GACATTTATCCAACGTAGCAATACTCACCTTATACCTATTTGCACTCAAT
GTTGTAGGTTCTGCCTAGTCTTTTGTCCATTGCATCGTATAGCTGTCGTG
TCGTGTCGTGTCGCGGCTGCGAAAAACAAGAATATAATTAATTGTGTCAT
TCTCCAAGTTACGGGAAGACATCAAATTCTGCCGCATTCCACGCGTGCGA
CTTGCCTCTGACGTGTGTCTTGCCACTCTTTTTGCCCTTCGCCTTTAGCA
CTTCGCTTGTCAACAAGGTGACGTGAGTGTCATCGATGCTTTGATCGTTC
GCGGAGGCAACGTT
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Coding sequence (CDS) from alignment at H-elongata_contig72842:787..1900+

>mRNA_H-elongata_contig72842.14965.1 ID=mRNA_H-elongata_contig72842.14965.1|Name=mRNA_H-elongata_contig72842.14965.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1512bp|location=Sequence derived from alignment at H-elongata_contig72842:787..1900+ (Himanthalia elongata Himel1 dioecious)
ATGAATGTTCTCGCTGCAGGAGCGGCGATCGCTGTCCTTCGAGACCGCAA
TCCCAACCCCAACGGGTCTACCCTTCTCCACGCCGTTGCTTGCGGTGGGA
ATGTTCGAATACTAACGGCCTTAGTAGCCGTTGATTGCGGCTGTGAGGAC
GACATCGACGTGCAGGAGTCCCAGTTCCCGAACAGCACACCCTTGCTTTG
TGCAATATGGTACGGGCATCGGAACATGACCGAGGCCTTGATTGCGGCCG
GAGCGGATCCTAGGAAGGCGGATGCTCGAAGTCAGACCGCGCTTCACCTG
GCTAGCATCCGCGGCCACTGCAGCATCCTTTCCGACCTCCTCAAGATGGG
ACTGGATATCGAAGCCCGAAATGACCAAGAATACACCCCGTTGGCATGCG
CCGTCGCCAGTGGAAAGGTTAACGCGTTAAAGCTTTTGCTTGATGCGGGA
GCATCGACTCAGACCAGGACAGCGAGCATGCTGCGGGTACTGGACATCGC
GGTCAAGGAAGGTCGCATCCGCTGCTTGCGGGTACTGCTGGCTGCAAGGG
TTAATCCCGAGGAGATTGACCAGGTTGGCCTGACGGCATTGCTTGCAGCC
ACTCGTACGAGCAACATTGCAGCCATCGCTGCGCTGATCGACGCAGGGGC
GGATATGGAGGGCCGTGGTGGAACTATGTGGACGCCACTGATGAATGTTC
TCGCTGCAGGAGCGGCGATCGCTGTCCTTCGAGACCGCAATCCCAACCCC
AACGGGTCTACCCTTCTCCACGCCGTTGCTTGCGGTGGGAATGTTCGAAT
ACTAACGGCCTTAGTAGCCGTTGATTGCGGCTGTGAGGACGACATCGACG
TGCAGGAGTCCCAGTTCCCGAACAGCACACCCTTGCTTTGTGCAATATGG
TACGGGCATCGGAACATGACCGAGGCCTTGATTGCGGCCGGAGCGGATCC
TAGGAAGGCGGATGCTCGAAGTCAGACCGCGCTTCACCTGGCTAGCATCC
GCGGCCACTGCAGCATCCTTTCCGACCTCCTCAAGATGGGACTGGATATC
GAAGCCCGAAATGACCAAGAATACACCCCGTTGGCATGCGCCGTCGCCAG
TGGAAAGGTTAACGCGTTAAAGCTTTTGCTTGATGCGGGAGCATCGACTC
AGACCAGGACAGCGAGCATGCTGCGGGTACTGGACATCGCGGTCAAGGAA
GGTCGCATCCGCTGCTTGCGGGTACTGCTGGCTGCAAGGGTTAATCCCGA
GGAGATTGACCAGGTTGGCCTGACGGCATTGCTTGCAGCCACTCGTACGA
GCAACATTGCAGCCATCGCTGCGCTGATCGACGCAGGGGCGGATATGGAG
GGCCGTGGTGGAACTATGTGGACGCCACTGCACTTCGCTTGTCAACAAGG
TGACGTGAGTGTCATCGATGCTTTGATCGTTCGCGGAGGCAACGTTCACT
TCGCTTGTCAACAAGGTGACGTGAGTGTCATCGATGCTTTGATCGTTCGC
GGAGGCAACGTT
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