mRNA_H-elongata_contig72831.14963.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig72831.14963.1
Unique NamemRNA_H-elongata_contig72831.14963.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig72831.14963.1 vs. uniprot
Match: A0A6H5JD86_9PHAE (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JD86_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 2.700e-7
Identity = 24/37 (64.86%), Postives = 28/37 (75.68%), Query Frame = 1 
Query:    1 ECLCQKFVVFGDEIDFRAHMLQMHPNQPIDRKIQVMY 111
            ECL +KFVVF  EID   H LQMHPN+PI R+IQV +
Sbjct:  244 ECLQKKFVVFDSEIDLAGHTLQMHPNKPIKRQIQVNF 280
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72831.14963.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JD86_9PHAE2.700e-764.86RING-type domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72831contigH-elongata_contig72831:1197..1313 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size117
Cds size117
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931130.6160648-CDS-H-elongata_contig72831:1196..13131622931130.6160648-CDS-H-elongata_contig72831:1196..1313Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72831 1197..1313 +
1691679710.6718397-CDS-H-elongata_contig72831:1196..13131691679710.6718397-CDS-H-elongata_contig72831:1196..1313Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72831 1197..1313 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72831.14963.1prot_H-elongata_contig72831.14963.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig72831 1197..1313 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig72831.14963.1

>prot_H-elongata_contig72831.14963.1 ID=prot_H-elongata_contig72831.14963.1|Name=mRNA_H-elongata_contig72831.14963.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=39bp
ECLCQKFVVFGDEIDFRAHMLQMHPNQPIDRKIQVMYQ*
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mRNA from alignment at H-elongata_contig72831:1197..1313+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig72831.14963.1 ID=mRNA_H-elongata_contig72831.14963.1|Name=mRNA_H-elongata_contig72831.14963.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=117bp|location=Sequence derived from alignment at H-elongata_contig72831:1197..1313+ (Himanthalia elongata Himel1 dioecious)
GAATGCCTTTGCCAAAAGTTCGTGGTGTTTGGCGACGAGATTGACTTCAG
GGCCCATATGCTCCAGATGCACCCAAACCAACCCATCGACCGAAAGATTC
AGGTCATGTACCAGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig72831:1197..1313+

>mRNA_H-elongata_contig72831.14963.1 ID=mRNA_H-elongata_contig72831.14963.1|Name=mRNA_H-elongata_contig72831.14963.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=234bp|location=Sequence derived from alignment at H-elongata_contig72831:1197..1313+ (Himanthalia elongata Himel1 dioecious)
GAATGCCTTTGCCAAAAGTTCGTGGTGTTTGGCGACGAGATTGACTTCAG
GGCCCATATGCTCCAGATGCACCCAAACCAACCCATCGACCGAAAGATTC
AGGTCATGTACCAGTAAGAATGCCTTTGCCAAAAGTTCGTGGTGTTTGGC
GACGAGATTGACTTCAGGGCCCATATGCTCCAGATGCACCCAAACCAACC
CATCGACCGAAAGATTCAGGTCATGTACCAGTAA
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