mRNA_H-elongata_contig7282.14958.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7282.14958.1
Unique NamemRNA_H-elongata_contig7282.14958.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7282.14958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7282contigH-elongata_contig7282:184..845 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size243
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931130.2558818-CDS-H-elongata_contig7282:183..3261622931130.2558818-CDS-H-elongata_contig7282:183..326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7282 184..326 +
1691679710.5055013-CDS-H-elongata_contig7282:183..3261691679710.5055013-CDS-H-elongata_contig7282:183..326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7282 184..326 +
1622931130.2738278-CDS-H-elongata_contig7282:746..8431622931130.2738278-CDS-H-elongata_contig7282:746..843Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7282 747..843 +
1691679710.5186327-CDS-H-elongata_contig7282:746..8431691679710.5186327-CDS-H-elongata_contig7282:746..843Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7282 747..843 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7282.14958.1prot_H-elongata_contig7282.14958.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7282 184..843 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7282.14958.1

>prot_H-elongata_contig7282.14958.1 ID=prot_H-elongata_contig7282.14958.1|Name=mRNA_H-elongata_contig7282.14958.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
GDGDSNGNGRPGARGDSEAALGMEPAPAYGGTVGRSKSKFNRLQENVRPS
DAIQDIPLRPIAKQGIYSRITAIPSTGVGQ
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mRNA from alignment at H-elongata_contig7282:184..845+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7282.14958.1 ID=mRNA_H-elongata_contig7282.14958.1|Name=mRNA_H-elongata_contig7282.14958.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=662bp|location=Sequence derived from alignment at H-elongata_contig7282:184..845+ (Himanthalia elongata Himel1 dioecious)
GGCGATGGCGATAGCAATGGCAATGGCCGCCCTGGAGCTCGTGGTGACTC
GGAAGCCGCATTGGGAATGGAGCCAGCTCCTGCTTATGGTGGCACCGTGG
GACGATCGAAATCGAAATTCAATCGACTTCAAGAAAATGTCAGGTGATTC
AAATTGTCGCCTTCTTTTTTAGAGTGCGACTCGTTTATCTCCTAACTTAT
CGTCTAACGGAATGTGGAATGGTATTAACGGAATGTTCCATGTTTCAGCA
GGGTTCTAGTTGTTTTAATTCCACTCGTTCCATTGCCTCAAAGTGATAGT
TATTTCTTCTTCCTTTATCCCTTCGTGTAGCACCATCATCCCTTCTCGAT
TCTCGATTCTCAAACCTAGATGCTTATCACCAACAACCAACAAGGTGCGT
CACGTTATGGAGATTTTTAGAGTGGTCCACAAGCCAGCCATCCACCCAAT
TAGACATCGAACGGTTTGCCACCTATATGTGCACGATGGTTTCGTCGATA
CCCCGTTGATTGTTGCCAGATCTTGACTCACAGCGTTCAAATCCTCGGAC
TGCCATGGTGCAGGCCATCCGACGCGATCCAAGACATCCCTTTACGGCCA
ATAGCAAAACAGGGTATCTACTCCAGGATCACGGCGATACCGTCAACGGG
AGTAGGGCAAGG
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Coding sequence (CDS) from alignment at H-elongata_contig7282:184..845+

>mRNA_H-elongata_contig7282.14958.1 ID=mRNA_H-elongata_contig7282.14958.1|Name=mRNA_H-elongata_contig7282.14958.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig7282:184..845+ (Himanthalia elongata Himel1 dioecious)
GGCGATGGCGATAGCAATGGCAATGGCCGCCCTGGAGCTCGTGGTGACTC
GGAAGCCGCATTGGGAATGGAGCCAGCTCCTGCTTATGGTGGCACCGTGG
GACGATCGAAATCGAAATTCAATCGACTTCAAGAAAATGTCAGGGCGATG
GCGATAGCAATGGCAATGGCCGCCCTGGAGCTCGTGGTGACTCGGAAGCC
GCATTGGGAATGGAGCCAGCTCCTGCTTATGGTGGCACCGTGGGACGATC
GAAATCGAAATTCAATCGACTTCAAGAAAATGTCAGGCCATCCGACGCGA
TCCAAGACATCCCTTTACGGCCAATAGCAAAACAGGGTATCTACTCCAGG
ATCACGGCGATACCGTCAACGGGAGTAGGGCAAGCCATCCGACGCGATCC
AAGACATCCCTTTACGGCCAATAGCAAAACAGGGTATCTACTCCAGGATC
ACGGCGATACCGTCAACGGGAGTAGGGCAA
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