mRNA_H-elongata_contig72799.14957.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig72799.14957.1
Unique NamemRNA_H-elongata_contig72799.14957.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig72799.14957.1 vs. uniprot
Match: A0A6H5JFR3_9PHAE (1,3-beta-glucan synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFR3_9PHAE)

HSP 1 Score: 219 bits (558), Expect = 7.720e-64
Identity = 111/121 (91.74%), Postives = 117/121 (96.69%), Query Frame = 1
Query:    1 MGLLNTMPMLATLTVEKGLLQALGEVIQVFISGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVIHHSRFDDLYRFFANSHFYLGFELMMALILTAAMTSSKQYLGITWSLCLACIS 363
            MGLLNTMPMLATLTVEKGLL ALGEV+QVF+SGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFV HHS FDDLYRFFANSHFYLGFELM+ALI+TAAMTSSKQYLG+TWSL LAC+S
Sbjct: 1743 MGLLNTMPMLATLTVEKGLLVALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFELMVALIVTAAMTSSKQYLGMTWSLWLACLS 1863          
BLAST of mRNA_H-elongata_contig72799.14957.1 vs. uniprot
Match: D7FR93_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR93_ECTSI)

HSP 1 Score: 172 bits (437), Expect = 1.030e-53
Identity = 86/91 (94.51%), Postives = 88/91 (96.70%), Query Frame = 1
Query:    1 MGLLNTMPMLATLTVEKGLLQALGEVIQVFISGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVIHHSRFDDLYRFFANSHFYLGFE 273
            MGLLNTMPMLATLTVEKGLL ALGEV+QVF+SGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFV HHS FDDLYRFFANSHFYLGFE
Sbjct:    7 MGLLNTMPMLATLTVEKGLLVALGEVLQVFLSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSCFDDLYRFFANSHFYLGFE 97          
BLAST of mRNA_H-elongata_contig72799.14957.1 vs. uniprot
Match: A0A835Z4B5_9STRA (1,3-beta-glucan synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4B5_9STRA)

HSP 1 Score: 189 bits (480), Expect = 2.460e-53
Identity = 97/121 (80.17%), Postives = 105/121 (86.78%), Query Frame = 1
Query:    1 MGLLNTMPMLATLTVEKGLLQALGEVIQVFISGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVIHHSRFDDLYRFFANSHFYLGFELMMALILTAAMTSSKQYLGITWSLCLACIS 363
            MG+LNT+PMLATL VEKGL  AL  V QVF+SGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFV HHS FDDLYRFFA SHFYLGFEL +AL++ A MTS+ QY G TWSL LAC+S
Sbjct: 1430 MGVLNTLPMLATLMVEKGLRAALITVGQVFVSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSSFDDLYRFFATSHFYLGFELGVALVIMAFMTSAHQYFGRTWSLWLACVS 1550          
BLAST of mRNA_H-elongata_contig72799.14957.1 vs. uniprot
Match: A0A835Z1S2_9STRA (1,3-beta-glucan synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1S2_9STRA)

HSP 1 Score: 189 bits (479), Expect = 3.380e-53
Identity = 97/121 (80.17%), Postives = 105/121 (86.78%), Query Frame = 1
Query:    1 MGLLNTMPMLATLTVEKGLLQALGEVIQVFISGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVIHHSRFDDLYRFFANSHFYLGFELMMALILTAAMTSSKQYLGITWSLCLACIS 363
            MG+LNT+PMLATL VEKGL  AL  V QVF+SGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFV HHS FDDLYRFFA SHFYLGFEL  ALI+ A  +++KQY+G TWSL LACIS
Sbjct: 1829 MGVLNTLPMLATLMVEKGLRAALVVVGQVFVSGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVTHHSTFDDLYRFFATSHFYLGFELAAALIIMACTSAAKQYIGRTWSLWLACIS 1949          
BLAST of mRNA_H-elongata_contig72799.14957.1 vs. uniprot
Match: A0A8J2T241_9STRA (1,3-beta-glucan synthase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T241_9STRA)

HSP 1 Score: 159 bits (403), Expect = 5.860e-43
Identity = 84/119 (70.59%), Postives = 94/119 (78.99%), Query Frame = 1
Query:    1 MGLLNTMPMLATLTVEKGLLQALGEVIQVFISGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVIHHSRFDDLYRFFANSHFYLGFELMMALILTAAMTSSKQYLGITWSLCLAC 357
            +GLLNT+P+LATL VE+GLL A  +V QVF SGGP+YF+FHIQTRAHYF QTLLAGGA YRATGRGFV  H+ FD+ YRFFA SH YLG EL  AL L  A T + QYLG TWSL LAC
Sbjct: 1809 LGLLNTLPLLATLAVERGLLAATRDVAQVFASGGPLYFVFHIQTRAHYFMQTLLAGGATYRATGRGFVTTHNSFDEQYRFFAASHLYLGVELAAALGLMGAHTQAGQYLGRTWSLWLAC 1927          
BLAST of mRNA_H-elongata_contig72799.14957.1 vs. uniprot
Match: A0A7S2UV62_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UV62_9STRA)

HSP 1 Score: 155 bits (393), Expect = 1.290e-41
Identity = 77/121 (63.64%), Postives = 97/121 (80.17%), Query Frame = 1
Query:    1 MGLLNTMPMLATLTVEKGLLQALGEVIQVFISGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVIHHSRFDDLYRFFANSHFYLGFELMMALILTAAMTSSKQYLGITWSLCLACIS 363
            MG+L T+PM +TL VEKG+  A+G V+QVF SGGP+YFMFHIQT+++YF QTLLAG A+YR TGRGFV  HS FD+ +RFFA+SHFYLGFEL++ALI+    T + Q+ G TWSL LA +S
Sbjct: 1207 MGILQTVPMFSTLAVEKGVASAVGTVLQVFFSGGPLYFMFHIQTKSYYFIQTLLAGNAKYRPTGRGFVTRHSSFDENFRFFASSHFYLGFELLVALIILGVTTKAHQFWGRTWSLWLADVS 1327          
BLAST of mRNA_H-elongata_contig72799.14957.1 vs. uniprot
Match: A0A482SV99_9ARCH (FKS1_dom1 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SV99_9ARCH)

HSP 1 Score: 152 bits (383), Expect = 2.890e-40
Identity = 77/121 (63.64%), Postives = 93/121 (76.86%), Query Frame = 1
Query:    1 MGLLNTMPMLATLTVEKGLLQALGEVIQVFISGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVIHHSRFDDLYRFFANSHFYLGFELMMALILTAAMTSSKQYLGITWSLCLACIS 363
            MG+L T+P+  TLTVEKG  QA+ E+  + +SGGP+YF+FHIQT+++YF QTLLAGGA YR TGRGFV  H+ FDD  RFFA+SH YLGFEL  ALI+    T SKQY G+TWSL LA IS
Sbjct: 1533 MGILQTLPLAVTLTVEKGFRQAISEIGFMILSGGPLYFIFHIQTKSYYFSQTLLAGGAMYRPTGRGFVTQHAPFDDTLRFFASSHIYLGFELAAALIIFGLYTKSKQYAGLTWSLWLASIS 1653          
BLAST of mRNA_H-elongata_contig72799.14957.1 vs. uniprot
Match: F0YA81_AURAN (1,3-beta-glucan synthase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YA81_AURAN)

HSP 1 Score: 152 bits (383), Expect = 2.910e-40
Identity = 79/118 (66.95%), Postives = 91/118 (77.12%), Query Frame = 1
Query:    1 MGLLNTMPMLATLTVEKGLLQALGEVIQVFISGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVIHHSRFDDLYRFFANSHFYLGFELMMALILTAAMTSSKQYLGITWSLCLA 354
            +GLLNT+P+LATL VE+GL  A  +V QVF SGGP+YF+FHIQTRAHYF QT+LAGGA YRATGRGFV  HS FD+ YRFFA SH +LG EL  AL+L    T + QY G TWSL LA
Sbjct: 1905 LGLLNTLPLLATLAVERGLWAAAKDVAQVFASGGPLYFIFHIQTRAHYFTQTILAGGATYRATGRGFVTRHSTFDEQYRFFAASHLHLGVELSAALVLMGLHTGAGQYAGRTWSLWLA 2022          
BLAST of mRNA_H-elongata_contig72799.14957.1 vs. uniprot
Match: A0A7S2QVX6_9STRA (1,3-beta-glucan synthase (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QVX6_9STRA)

HSP 1 Score: 151 bits (381), Expect = 5.390e-40
Identity = 75/121 (61.98%), Postives = 94/121 (77.69%), Query Frame = 1
Query:    1 MGLLNTMPMLATLTVEKGLLQALGEVIQVFISGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVIHHSRFDDLYRFFANSHFYLGFELMMALILTAAMTSSKQYLGITWSLCLACIS 363
            MGL+NT+P+ ATL VE+G   ++ E+ QVF++GGP++FMFHIQT+AHYF QT+L GGA+YRATGRGFV  HS F + +RFFA+SH YLG EL  AL+L    T + QY G TWSL LACIS
Sbjct: 1653 MGLMNTIPLFATLGVERGWWASMMEIFQVFVTGGPLHFMFHIQTKAHYFAQTILVGGAKYRATGRGFVTQHSPFAENFRFFASSHLYLGVELSAALVLMGVYTDAGQYFGRTWSLWLACIS 1773          
BLAST of mRNA_H-elongata_contig72799.14957.1 vs. uniprot
Match: A0A7S3H8Z7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H8Z7_9STRA)

HSP 1 Score: 150 bits (380), Expect = 7.100e-40
Identity = 74/121 (61.16%), Postives = 96/121 (79.34%), Query Frame = 1
Query:    1 MGLLNTMPMLATLTVEKGLLQALGEVIQVFISGGPMYFMFHIQTRAHYFYQTLLAGGAQYRATGRGFVIHHSRFDDLYRFFANSHFYLGFELMMALILTAAMTSSKQYLGITWSLCLACIS 363
            MG+L TMP+L TLTVEKG+L A+ E+  + +SGGP+YF+FHI+T+++YF QTL+AGGA+YR TGR FV  HS FD+ +RFFA+SH YLGFE+ +AL+L    TSS QY G+TWSL L  IS
Sbjct:  267 MGILQTMPLLITLTVEKGVLAAISEIGFMILSGGPLYFIFHIETKSYYFSQTLMAGGAKYRPTGRAFVTSHSSFDENFRFFASSHIYLGFEIFIALVLFGVYTSSTQYFGLTWSLWLTVIS 387          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72799.14957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JFR3_9PHAE7.720e-6491.741,3-beta-glucan synthase n=1 Tax=Ectocarpus sp. CC... [more]
D7FR93_ECTSI1.030e-5394.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z4B5_9STRA2.460e-5380.171,3-beta-glucan synthase n=1 Tax=Tribonema minus T... [more]
A0A835Z1S2_9STRA3.380e-5380.171,3-beta-glucan synthase n=1 Tax=Tribonema minus T... [more]
A0A8J2T241_9STRA5.860e-4370.591,3-beta-glucan synthase n=1 Tax=Pelagomonas calce... [more]
A0A7S2UV62_9STRA1.290e-4163.64Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A482SV99_9ARCH2.890e-4063.64FKS1_dom1 domain-containing protein n=1 Tax=archae... [more]
F0YA81_AURAN2.910e-4066.951,3-beta-glucan synthase n=1 Tax=Aureococcus anoph... [more]
A0A7S2QVX6_9STRA5.390e-4061.981,3-beta-glucan synthase (Fragment) n=1 Tax=Tripar... [more]
A0A7S3H8Z7_9STRA7.100e-4061.16Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72799contigH-elongata_contig72799:891..2482 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score174.1
Seed ortholog evalue4e-41
Seed eggNOG ortholog2880.D7FR93
KEGG koko:K11000
EggNOG free text desc.1,3-beta-D-glucan synthase activity
EggNOG OGsKOG0916@1,KOG0916@2759
COG Functional cat.S
CAZyGT48
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01003
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGlycosyl transferase, family 48
Ec32 orthologEc-08_004910.1
Exons2
Model size365
Cds size363
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931130.1996045-CDS-H-elongata_contig72799:890..11631622931130.1996045-CDS-H-elongata_contig72799:890..1163Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72799 891..1163 +
1691679710.4781246-CDS-H-elongata_contig72799:890..11631691679710.4781246-CDS-H-elongata_contig72799:890..1163Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72799 891..1163 +
1622931130.215082-CDS-H-elongata_contig72799:2392..24821622931130.215082-CDS-H-elongata_contig72799:2392..2482Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72799 2393..2482 +
1691679710.4908233-CDS-H-elongata_contig72799:2392..24821691679710.4908233-CDS-H-elongata_contig72799:2392..2482Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72799 2393..2482 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72799.14957.1prot_H-elongata_contig72799.14957.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig72799 891..2482 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig72799.14957.1

>prot_H-elongata_contig72799.14957.1 ID=prot_H-elongata_contig72799.14957.1|Name=mRNA_H-elongata_contig72799.14957.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
MGLLNTMPMLATLTVEKGLLQALGEVIQVFISGGPMYFMFHIQTRAHYFY
QTLLAGGAQYRATGRGFVIHHSRFDDLYRFFANSHFYLGFELMMALILTA
AMTSSKQYLGITWSLCLACIS
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mRNA from alignment at H-elongata_contig72799:891..2482+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig72799.14957.1 ID=mRNA_H-elongata_contig72799.14957.1|Name=mRNA_H-elongata_contig72799.14957.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1592bp|location=Sequence derived from alignment at H-elongata_contig72799:891..2482+ (Himanthalia elongata Himel1 dioecious)
ATGGGCCTCCTGAATACGATGCCCATGCTGGCGACCCTCACGGTGGAGAA AGGTCTCCTACAGGCGCTGGGCGAGGTTATTCAGGTGTTCATCAGCGGGG GGCCTATGTACTTCATGTTCCACATACAGACCCGCGCGCACTACTTCTAC CAGACCCTTCTTGCAGGCGGCGCTCAGTACCGTGCGACAGGCAGGGGCTT CGTGATCCACCACTCCCGCTTCGACGATCTCTACAGGTTCTTCGCGAACT CCCACTTCTATCTTGGGTTTGAGGTGCGCCATGCCTTCGTTTTGAGATTA TTAGTAATAGGGAAAGATAGAGAGAAATTGGGTTGGGGTTTGGATCGTAA CAGGGGTACACCAACTATCGTCAAGGTTGAGAGTGTATGAACAAATAGTT TTGTCCACAATCCGCAATTTGCCCTCTCTTTTTCGGCTCCTTTTTAGTTG ATACTGTACTTACTATTGCTACAGTATAACAGTCCTTTTTTTGGTTCGTG TTTCTTTTGTGCCCCGTTTTGCTTAGGCCCTCTTTATCTTCCTTTCAATA CGCCACGGTTATAGTTAGGATTAGGATTAGGGTTAGGAGCATAATAAAAC GAAGTGGTTTTTGGGGGCACACGACTGTCGTTAGTGCCTTACTCTGGTAC TTTACTATATAGTATATGGTATTTAATACATAACGAGAAACATGCTGTAA GACCCGACAATGTCTATATGACTGTATCGCATATGTCCACTGTACCAATA GTAGGTAGGTGGGGGGAAAAATAAAGGCGCAGAATAATTGTTCCATGGGG TTACAGTACCTGTTACTCAAGCTGCCTTGAGGACTGCTGGCTCAATGTTG GCGGGCTCTCGGTGGTGAACGCCATCAGTACTAGCAATGGTGTGGCCTAA TAACATTGGGATTGGCCAGATAACGGTTTGACGGTATGACGGTTTGACGG TAGAAATGGATGCTTTCGCGGAAAACGACAGGATCGAGAGGATTCGGGGA GTACGTGGGACGGGACGGCCGAGTCCGTCTCGCGATACCAAATCCTCAGA CGCAAACGGGGACATGGGAAAATTCATTTCCCTTGTTTAGCTGACCACAA GCAGGAGGCAACCATAGATAAATCATATCCGTCATAGAAAGCTCTGAGGT CGTCCAGACGACACCCCAATTGCCCCTCAACCCCCCACGCATCCCGCACC AACGATTCCCCTTTCTCTCTATCTACACTCATCCACCGTCAGACCATGAG ACCGTGAGTGCGTGTCATCCGTTCGTTTTTGTGCCCTTTCGCTTCTCAAG CAGAGTATCAGTATCAATATCAATGCATTATCAGTACAGTATCAATACAT TATCATTATCAATACAGTGTCAATATCATTAAGATATTAGTATCAATATC GTCCTCCTCCTCCTAGTAGTAATCGTTCTATCTATGTCCAAACTTTCTTC CTGCGGCCACCGTATTGCTGGCAAACCCTGCCCCACACAATTCCCCATAC AGCTGATGATGGCTCTCATCCTGACGGCGGCGATGACATCCTCCAAGCAG TACTTGGGCATCACGTGGTCCCTGTGTCTGGCGTGTATCAGC
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Coding sequence (CDS) from alignment at H-elongata_contig72799:891..2482+

>mRNA_H-elongata_contig72799.14957.1 ID=mRNA_H-elongata_contig72799.14957.1|Name=mRNA_H-elongata_contig72799.14957.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at H-elongata_contig72799:891..2482+ (Himanthalia elongata Himel1 dioecious)
ATGGGCCTCCTGAATACGATGCCCATGCTGGCGACCCTCACGGTGGAGAA
AGGTCTCCTACAGGCGCTGGGCGAGGTTATTCAGGTGTTCATCAGCGGGG
GGCCTATGTACTTCATGTTCCACATACAGACCCGCGCGCACTACTTCTAC
CAGACCCTTCTTGCAGGCGGCGCTCAGTACCGTGCGACAGGCAGGGGCTT
CGTGATCCACCACTCCCGCTTCGACGATCTCTACAGGTTCTTCGCGAACT
CCCACTTCTATCTTGGGTTTGAGATGGGCCTCCTGAATACGATGCCCATG
CTGGCGACCCTCACGGTGGAGAAAGGTCTCCTACAGGCGCTGGGCGAGGT
TATTCAGGTGTTCATCAGCGGGGGGCCTATGTACTTCATGTTCCACATAC
AGACCCGCGCGCACTACTTCTACCAGACCCTTCTTGCAGGCGGCGCTCAG
TACCGTGCGACAGGCAGGGGCTTCGTGATCCACCACTCCCGCTTCGACGA
TCTCTACAGGTTCTTCGCGAACTCCCACTTCTATCTTGGGTTTGAGCTGA
TGATGGCTCTCATCCTGACGGCGGCGATGACATCCTCCAAGCAGTACTTG
GGCATCACGTGGTCCCTGTGTCTGGCGTGTATCAGCCTGATGATGGCTCT
CATCCTGACGGCGGCGATGACATCCTCCAAGCAGTACTTGGGCATCACGT
GGTCCCTGTGTCTGGCGTGTATCAGC
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