mRNA_H-elongata_contig72783.14955.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig72783.14955.1
Unique NamemRNA_H-elongata_contig72783.14955.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig72783.14955.1 vs. uniprot
Match: A0A6H5LEA9_9PHAE (DAO domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LEA9_9PHAE)

HSP 1 Score: 411 bits (1056), Expect = 8.440e-133
Identity = 233/404 (57.67%), Postives = 279/404 (69.06%), Query Frame = 1
Query:    1 TSASGLVHDSGGSSVDAVLLEDGRKFHAKAYVSATGAWMRELMPVPMLPHKGQMMALRQPGGIRREG---DAGAIGLRRVFFAEGCYIIPKRDGRVVVGSTVEIGEYGRHNTPAGIKHIIDAAIKVCPALGDLAIDRTWAGLRPSTPDTMPVLGPFPQCRNLFIAGGYWRNGVLLAPKAAQLVADTVCGCLPPQDEVFLRTFTVDRLITSDGQRTPAQA---EPAVVSAATPAIQPPS-----------AEAYSSELSQSDLLGMERAALEGSNDGGMFSGLEGLGTQATAIEEVSGQDHRRFSFSGNEENTSSLPVVDSAVPSAPREPVNDYDGSDRFSESSLKEARLANRLVQK-GSDARLEALFGDGPDESSIPDANMVDMNVKAWEDGAEEVAKILGAKV 1158
            T+A+ LV+DS G+SVDAV+LEDGR+ HA A VSATGAWMRELMPVPM+PHKGQMMALR+P G    G     G IGL RVFFAEGCYIIPKRDGRVVVGSTVE+GEYG +NTPAGIK IIDAA+KVCPAL DLAI+RTWAGLRP TPD  PVLG  P+C NLF+AGGYWRNGVLLAPK AQLVAD VCG L PQDE FL+ F++DR  T  G+   A A   +P    AA    Q P+           AE + SE S S++L MERAALEG+ND  + S LEG+  +     EV   D  R   S +                  +EPVNDY  S++FSE  LKEAR+ANR++Q+  SDARLE++FG GP+E+   +      N+ +W+DGA EVA I+GA++
Sbjct:  232 TAAASLVYDSEGTSVDAVVLEDGRQVHANAVVSATGAWMRELMPVPMVPHKGQMMALREPAGGLGAGAPRQGGGIGLTRVFFAEGCYIIPKRDGRVVVGSTVEVGEYGIYNTPAGIKQIIDAAVKVCPALADLAIERTWAGLRPVTPDCFPVLGASPRCPNLFVAGGYWRNGVLLAPKTAQLVADAVCGLLSPQDESFLQEFSMDRF-TKLGESAAAAARDDKPRAQPAAAVEPQRPAPTGTFSSSGSRAEGFISEASPSEVLEMERAALEGANDASILSALEGMFGEGMVPVEVEEDDASRDVPSTHASXXXXXXXXXXXXXKV-QEPVNDYHASEQFSEEKLKEARMANRMLQEDSSDARLESVFGGGPEEAGFSEGIA---NINSWDDGAAEVASIIGAEL 630          
BLAST of mRNA_H-elongata_contig72783.14955.1 vs. uniprot
Match: A0A835ZBS5_9STRA (Glycine oxidase thio n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBS5_9STRA)

HSP 1 Score: 248 bits (632), Expect = 8.430e-72
Identity = 165/409 (40.34%), Postives = 219/409 (53.55%), Query Frame = 1
Query:    1 TSASGLVHDSGGSSVDAVLLEDGRKFHAKAYVSATGAWMRELMPVPMLPHKGQMMALRQPGGIRREGDAGAIGLRRVFFAEGCYIIPKRDGRVVVGSTVEIGEYGRHNTPAG------IKHIIDAAIKVCPALGDLAIDRTWAGLRPSTPDTMPVLGPFPQCRNLFIAGGYWRNGVLLAPKAAQLVADTVCGCLPPQDEVFLRTFTVDRLITSDGQRTPAQAEPAVVSAATPAIQPPSAEAYSSELSQSDLLGMERAALEGSNDGGM-FSGLEGL------GTQATAIEEVS------GQDHRRFSFSGNEENTSSLPVVDSAVPSAPREPVNDYDGSDRFSESSLKEARLANRLVQKGSDARLEALFG----DGPDESSIPDANMVDMNVKAWEDGAEEVAKILGAKV 1158
            T+A GLV+++ G +  AV+L DGR+   +A V A GAWMREL+PVPM  HKGQMMALR P G+++          RV FAE  YIIPKRDGRVVVG+TVE  ++  H TPAG      +  +I  A KVCPAL  +AI+ TWAGLRP  PD+MPVLG   +CRN+F+AGGYWRNGVLLAP+  QLVAD V   L   D   L  F+ DR +   G R  A AE ++   A                     +G      +G++ GGM F GL G+      G     +E         G D ++   + + + T +      A+  +   PV DYD    FSE +LKEAR +NR         L+ +F     D  D+S +  A+       AW+D A   A+ +GA++
Sbjct:  134 TAARGLVYNATGKAAAAVVLSDGRQVKCEAVVGAMGAWMRELLPVPMTSHKGQMMALRSPSGLQKAIPG------RVLFAEDAYIIPKRDGRVVVGATVERDDWSLHTTPAGKGAATGLARLIANATKVCPALAHMAIEETWAGLRPVAPDSMPVLGASERCRNVFLAGGYWRNGVLLAPRTGQLVADAVMNELSVADRTVLGAFSSDRFL---GARKGAAAERSLGGIA---------------------VGFAGTVSKGASKGGMAFDGLYGMFGAGGRGYIPPELEHAEEEARGPGADAQQARDAADAQQTQA-----EALEESEEGPVTDYDAMPEFSEEALKEARRSNR--------NLDEIFSSYELDAQDQSELAAADATARPAYAWDDDALSQAQSVGAEL 499          
BLAST of mRNA_H-elongata_contig72783.14955.1 vs. uniprot
Match: W7U8T7_9STRA (Glycine oxidase n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U8T7_9STRA)

HSP 1 Score: 192 bits (488), Expect = 5.800e-52
Identity = 99/193 (51.30%), Postives = 127/193 (65.80%), Query Frame = 1
Query:   43 VDAVLLEDGRKFHAKAYVSATGAWMRELMPVPMLPHKGQMMALRQPGGIRREGDAGAIGLRRVFFAEGCYIIPKRDGRVVVGSTVEIGEYGRHNTPAGIKHIIDAAIKVCPALGDLAIDRTWAGLRPSTPDTMPVLGPFPQCRNLFIAGGYWRNGVLLAPKAAQLVADTVCGCLPPQDEVFLRTFTVDRLITS 621
            V AV + DGR+      V A GAWM  L+PVP+ P KGQM++LR      ++G+     L RV FAE CY+IPK DGR++VG+TVE G++ R  T  GI  +   A+++CPALG+L ++ TWAGLRP+TPDT+PVLG  P   NLF+AGGYWRNGVLLAP+  QLVAD V G +   D   L  F   R + S
Sbjct:  262 VQAVKMSDGRRLSFAQVVVANGAWMNRLLPVPVGPVKGQMLSLRP-----KKGEPNP--LTRVIFAENCYLIPKADGRLIVGATVEAGQWDRGVTAKGIHDLTQRALQICPALGNLELEETWAGLRPTTPDTLPVLGSTPW-ENLFVAGGYWRNGVLLAPRTGQLVADCVEGKVGADDAALLSHFAWSRFLPS 446          
BLAST of mRNA_H-elongata_contig72783.14955.1 vs. uniprot
Match: A0A7S0BWK6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BWK6_9STRA)

HSP 1 Score: 186 bits (473), Expect = 2.010e-51
Identity = 89/192 (46.35%), Postives = 129/192 (67.19%), Query Frame = 1
Query:   52 VLLEDGRKFHAKAYVSATGAWMRELMPVPMLPHKGQMMALRQPGGIRREGDAGAIGLRRVFFAEGCYIIPKRDGRVVVGSTVEIGEYGRHNTPAGIKHIIDAAIKVCPALGDLAIDRTWAGLRPSTPDTMPVLGPFPQCRNLFIAGGYWRNGVLLAPKAAQLVADTVCGCLPPQDEVFLRTFTVDRLITSDG 627
            V  + G  ++A A + A G+WMR+L+P+P++ HKGQ  ++RQP         G   L RV FA+  YI+PK DGR++VG+TVE+G+Y    TP G+ H ++AA+++ PAL DL I+ +W G+RP+TPD +PVLG  P   N+F+AGGYWRNGVLLAPK  QL++D V   +  +D+V L  F  +R +  +G
Sbjct:   84 VRTKGGLTYNASAVLVANGSWMRDLLPLPVVAHKGQSFSVRQP-------KHGPPLLNRVLFAQDTYIVPKADGRIIVGATVEVGDYSHDITPRGMMHCMNAAMELLPALADLPIEESWCGMRPTTPDKVPVLGATPW-GNVFVAGGYWRNGVLLAPKTGQLISDLVNQNVADKDQVLLDAFAWERFMEKEG 267          
BLAST of mRNA_H-elongata_contig72783.14955.1 vs. uniprot
Match: A0A4D9DFC1_9STRA (DAO domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DFC1_9STRA)

HSP 1 Score: 192 bits (489), Expect = 9.980e-51
Identity = 99/193 (51.30%), Postives = 124/193 (64.25%), Query Frame = 1
Query:   43 VDAVLLEDGRKFHAKAYVSATGAWMRELMPVPMLPHKGQMMALRQPGGIRREGDAGAIGLRRVFFAEGCYIIPKRDGRVVVGSTVEIGEYGRHNTPAGIKHIIDAAIKVCPALGDLAIDRTWAGLRPSTPDTMPVLGPFPQCRNLFIAGGYWRNGVLLAPKAAQLVADTVCGCLPPQDEVFLRTFTVDRLITS 621
            V AV + DGR+      V A GAWM  L+PVP+ P KGQM++LR   G           L RV FAE CY+IPK DGR++VG+TVE G++ R  T  GI  +   A+++CPALG L ++ TWAGLRP+TPDT+PVLG  P   NLF+AGGYWRNGVLLAP+  QLVAD V G +  +D   L  F   R + S
Sbjct:  194 VQAVKMSDGRRLSFAQVVVANGAWMNRLLPVPVGPVKGQMLSLRPKRGEPNP-------LTRVIFAENCYLIPKADGRLIVGATVEAGQWDRGVTAKGIHDLTQRALQICPALGSLELEETWAGLRPTTPDTLPVLGSTPW-ENLFVAGGYWRNGVLLAPRTGQLVADCVEGKVGAEDAALLSHFAWSRFLPS 378          
BLAST of mRNA_H-elongata_contig72783.14955.1 vs. uniprot
Match: A0A7S1YUL8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YUL8_9STRA)

HSP 1 Score: 190 bits (483), Expect = 2.480e-50
Identity = 98/193 (50.78%), Postives = 119/193 (61.66%), Query Frame = 1
Query:   31 GGSSVDAVLLEDGRKFHAKAYVSATGAWMRELMPVPMLPHKGQMMALRQPGGIRREGDAGAIGLRRVFFAEGCYIIPKRDGRVVVGSTVEIGEYGRHNTPAGIKHIIDAAIKVCPALGDLAIDRTWAGLRPSTPDTMPVLGPFPQCRNLFIAGGYWRNGVLLAPKAAQLVADTVCGCLPPQDEVFLRTFTVDR 609
            GG     V L DGR       + A G+WMR+L+PVP+ PHKGQ  +LR P             L RV FA+  YI+PK DGR+VVG+TVE G + +H TPAG+ H I  A+ + P+L  L I+ TW GLRP+TPD  P+LG  P   NL IAGGYWRNGVLLAPK  QL+AD V G L  +DE  L  F  DR
Sbjct:  106 GGGKCKEVRLSDGRILSPNTVIVANGSWMRDLLPVPITPHKGQSFSLRMPPNTPPI-------LSRVLFAQDTYIVPKADGRIVVGATVEAGTFDKHVTPAGLMHCISNALHLVPSLSTLPIEETWVGLRPTTPDKGPILGRTPWS-NLHIAGGYWRNGVLLAPKTGQLLADLVTGTLSEEDETLLDAFAWDR 290          
BLAST of mRNA_H-elongata_contig72783.14955.1 vs. uniprot
Match: A0A7S1XRU6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XRU6_9STRA)

HSP 1 Score: 176 bits (445), Expect = 7.740e-49
Identity = 89/180 (49.44%), Postives = 115/180 (63.89%), Query Frame = 1
Query:  100 ATGAWMRELMPVPMLPHKGQMMALRQPGGIRREGDAGAIGLRRVFFAEGCYIIPKRDGRVVVGSTVEI-GEYGRHNTPAGIKHIIDAAIKVCPALGDLAIDRTWAGLRPSTPDTMPVLGPFP---QCRNLFIAGGYWRNGVLLAPKAAQLVADTVCGCLPPQDEVFLRTFTVDRLITSDG 627
            A+GAWMREL+PVPM P KGQMMALR P G        A  L RV F +G Y++PK DGR++VG+TVE    + R  TP G+ ++     +V P L +  +D TWAGLRP+TPD +PVLG         N++ AGGYWRNG+LL P A+QLV D + G L  +D   LR F+ DR + +DG
Sbjct:    1 ASGAWMRELLPVPMQPIKGQMMALRPPAG-----STSAQRLSRVLFGDGIYVVPKVDGRIIVGATVEPEAGFDRRVTPKGLAYLCGKLARVAPELTEYTVDETWAGLRPTTPDFLPVLGRASAQGMYENVYFAGGYWRNGMLLPPVASQLVVDQMAGTLSAEDAELLRHFSYDRFLAADG 175          
BLAST of mRNA_H-elongata_contig72783.14955.1 vs. uniprot
Match: B7FRM1_PHATC (4a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FRM1_PHATC)

HSP 1 Score: 186 bits (473), Expect = 1.540e-48
Identity = 97/193 (50.26%), Postives = 125/193 (64.77%), Query Frame = 1
Query:   52 VLLEDGRKFHAKAYVSATGAWMRELMPVPMLPHKGQMMALRQPGGIRREGDAGAIGLRRVFFAEGCYIIPKRDGRVVVGSTVEIGEYGRHNTPAGIKHIIDAAIKVCPALGDLAIDRTWAGLRPSTPDTMPVLGPFPQCRNLFIAGGYWRNGVLLAPKAAQLVADTVCGC-LPPQDEVFLRTFTVDRLITSDG 627
            V L+ GR     + + A GAWMR L+PVP+ PHKGQ ++LR P       D   I L+RV FA+  YI+PK DGR+VVG+TVE G Y  + TP G+ HI+  A+++ PAL DL I+ TWAGLRP+TPD  P+LG  P   NL++AGGYWRNGVLLAPK  +L+A  + G  +  QD+  L  F  DR    DG
Sbjct:  552 VRLQSGRYLSCNSILVANGAWMRNLLPVPIEPHKGQSLSLRMPK------DRPPI-LKRVLFAQDSYIVPKADGRIVVGATVEAGSYDPNVTPGGLLHILTHALQLVPALKDLPIEETWAGLRPTTPDKGPILGKTPW-ENLYLAGGYWRNGVLLAPKTGELLAALMTGQEIDEQDQAMLDAFAWDRFTNKDG 736          
BLAST of mRNA_H-elongata_contig72783.14955.1 vs. uniprot
Match: A0A7S3Q339_9STRA (Hypothetical protein n=4 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q339_9STRA)

HSP 1 Score: 186 bits (471), Expect = 2.270e-48
Identity = 96/203 (47.29%), Postives = 126/203 (62.07%), Query Frame = 1
Query:   31 GGSSVDAVLLEDGRKFHAKAYVSATGAWMRELMPVPMLPHKGQMMALRQPGGIRREGDAGAIGLRRVFFAEGCYIIPKRDGRVVVGSTVEIGEYGRHNTPAGIKHIIDAAIKVCPALGDLAIDRTWAGLRPSTPDTMPVLGPFPQCRNLFIAGGYWRNGVLLAPKAAQLVADTV----CGCLPPQDEVFLRTFTVDRLITSDG 627
            GG +   + L+DGR   A + V A G+WMR L+PVP+ PHKGQ  ++R P       D   + L RV FA+  YI+PK DGR+V+G+TVE G +  + TPAG+ H +  A+++ P LGDL ++ TWAGLRP+TPD  P+LG   +  NLFIAGGYWRNGVLLAPK  QL+ D V          +DE  L  F  DR   + G
Sbjct:  310 GGGNCKGIKLDDGRTLSASSVVVANGSWMRNLLPVPITPHKGQSFSVRMPA------DTEPV-LSRVLFAQDTYIVPKVDGRIVIGATVEAGSFDPNVTPAGLMHCMSNALQLVPGLGDLPVEETWAGLRPTTPDKGPILGRT-KWDNLFIAGGYWRNGVLLAPKTGQLIGDLVLNKGASLDDTEDEELLEAFKWDRFTVAGG 504          
BLAST of mRNA_H-elongata_contig72783.14955.1 vs. uniprot
Match: K0SQG9_THAOC (DAO domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SQG9_THAOC)

HSP 1 Score: 185 bits (470), Expect = 3.090e-48
Identity = 90/173 (52.02%), Postives = 115/173 (66.47%), Query Frame = 1
Query:   34 GSSVDAVLLEDGRKFHAKAYVSATGAWMRELMPVPMLPHKGQMMALRQPGGIRREGDAGAIGLRRVFFAEGCYIIPKRDGRVVVGSTVEIGEYGRHNTPAGIKHIIDAAIKVCPALGDLAIDRTWAGLRPSTPDTMPVLGPFPQCRNLFIAGGYWRNGVLLAPKAAQLVADTV 552
            G +   V L DGR + A+A V A G+WMRE++P+P+ PHKGQ  +LR P     EG  GA  L RV FA+  YI+PK DGR++VG+TVE G Y    TP G+ H +  A ++ P L +L I+ TWAGLRP+TPD  PVLG   Q  N+++AGGYWRNGVLLAPK  QLV   +
Sbjct:  275 GGTCTGVHLADGRTYKARAVVVANGSWMREILPLPVTPHKGQSFSLRMP-----EGGGGAPMLSRVLFAQDTYIVPKADGRIIVGATVEPGRYDGDVTPEGLLHCLSEATRLVPGLAELPIEETWAGLRPTTPDKCPVLGRTEQFDNVYLAGGYWRNGVLLAPKTGQLVGGLI 442          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72783.14955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LEA9_9PHAE8.440e-13357.67DAO domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835ZBS5_9STRA8.430e-7240.34Glycine oxidase thio n=1 Tax=Tribonema minus TaxID... [more]
W7U8T7_9STRA5.800e-5251.30Glycine oxidase n=2 Tax=Nannochloropsis gaditana T... [more]
A0A7S0BWK6_9STRA2.010e-5146.35Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
A0A4D9DFC1_9STRA9.980e-5151.30DAO domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A7S1YUL8_9STRA2.480e-5050.78Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S1XRU6_9STRA7.740e-4949.44Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
B7FRM1_PHATC1.540e-4850.264a-hydroxytetrahydrobiopterin dehydratase n=1 Tax=... [more]
A0A7S3Q339_9STRA2.270e-4847.29Hypothetical protein n=4 Tax=Chaetoceros debilis T... [more]
K0SQG9_THAOC3.090e-4852.02DAO domain-containing protein n=1 Tax=Thalassiosir... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72783contigH-elongata_contig72783:692..3063 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score442.6
Seed ortholog evalue1.9e-121
Seed eggNOG ortholog2880.D7G5B9
KEGG rclassRC00060,RC00557
KEGG koko:K00314
KEGG ReactionR00611
KEGG Pathwayko00260,ko01100,map00260,map01100
EggNOG free text desc.oxidoreductase activity, acting on the CH-NH group of donors, flavin as acceptor
EggNOG OGsCOG0404@1,KOG2844@2759
EC1.5.8.3
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFAD dependent oxidoreductase
Ec32 orthologEc-14_006950.1
Exons4
Model size1158
Cds size1158
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72783.14955.1prot_H-elongata_contig72783.14955.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig72783 692..3063 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931129.9963384-CDS-H-elongata_contig72783:691..9911622931129.9963384-CDS-H-elongata_contig72783:691..991Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72783 692..991 +
1691679710.4074154-CDS-H-elongata_contig72783:691..9911691679710.4074154-CDS-H-elongata_contig72783:691..991Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72783 692..991 +
1622931130.0135584-CDS-H-elongata_contig72783:1635..22361622931130.0135584-CDS-H-elongata_contig72783:1635..2236Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72783 1636..2236 +
1691679710.4207976-CDS-H-elongata_contig72783:1635..22361691679710.4207976-CDS-H-elongata_contig72783:1635..2236Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72783 1636..2236 +
1622931130.0332758-CDS-H-elongata_contig72783:2385..24401622931130.0332758-CDS-H-elongata_contig72783:2385..2440Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72783 2386..2440 +
1691679710.4290252-CDS-H-elongata_contig72783:2385..24401691679710.4290252-CDS-H-elongata_contig72783:2385..2440Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72783 2386..2440 +
1622931130.0575855-CDS-H-elongata_contig72783:2861..30631622931130.0575855-CDS-H-elongata_contig72783:2861..3063Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72783 2862..3063 +
1691679710.437713-CDS-H-elongata_contig72783:2861..30631691679710.437713-CDS-H-elongata_contig72783:2861..3063Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72783 2862..3063 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig72783.14955.1

>prot_H-elongata_contig72783.14955.1 ID=prot_H-elongata_contig72783.14955.1|Name=mRNA_H-elongata_contig72783.14955.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=386bp
TSASGLVHDSGGSSVDAVLLEDGRKFHAKAYVSATGAWMRELMPVPMLPH
KGQMMALRQPGGIRREGDAGAIGLRRVFFAEGCYIIPKRDGRVVVGSTVE
IGEYGRHNTPAGIKHIIDAAIKVCPALGDLAIDRTWAGLRPSTPDTMPVL
GPFPQCRNLFIAGGYWRNGVLLAPKAAQLVADTVCGCLPPQDEVFLRTFT
VDRLITSDGQRTPAQAEPAVVSAATPAIQPPSAEAYSSELSQSDLLGMER
AALEGSNDGGMFSGLEGLGTQATAIEEVSGQDHRRFSFSGNEENTSSLPV
VDSAVPSAPREPVNDYDGSDRFSESSLKEARLANRLVQKGSDARLEALFG
DGPDESSIPDANMVDMNVKAWEDGAEEVAKILGAKV
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mRNA from alignment at H-elongata_contig72783:692..3063+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig72783.14955.1 ID=mRNA_H-elongata_contig72783.14955.1|Name=mRNA_H-elongata_contig72783.14955.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2372bp|location=Sequence derived from alignment at H-elongata_contig72783:692..3063+ (Himanthalia elongata Himel1 dioecious)
ACGTCGGCATCTGGGCTCGTGCACGACAGCGGCGGTTCTTCTGTGGATGC AGTTCTCCTCGAAGACGGTCGAAAGTTTCACGCCAAGGCCTACGTCTCCG CCACGGGAGCATGGATGCGCGAGTTGATGCCCGTGCCCATGTTGCCACAC AAAGGGCAGATGATGGCGCTCAGGCAGCCGGGCGGAATACGACGAGAAGG CGATGCTGGTGCTATCGGTCTGAGGCGCGTTTTCTTCGCCGAGGGGTGCT ACATTATACCCAAGAGGGACGGTCGCGTTGTGGTGGGATCCACGGTGGAG GTGGGTTAGGGTTAGGGTTGGAGGTGGGGTGCGGCACGCCTATCATTGAC ATCACGTATGGATATGGTACGGGCGAACTCTGAGCACATTTCAATACGAA GTACGTTGACATATGATGTACCAGCCGCAATGGAGACATCTCCATCAGAA CGTGGCGTGAGCGGCTATACAGCGGCTTTGTCGTTCTGATTCTGCCATAA CAGAGAGGCTTGAGCTGCTGGGCGACGTCTAATTACTTTACCCGCAACTG CAATTAGCCTCCCCTGCTCGATGCAGTAACCAAAACCGGAAGCTTAGAAT TGGTGTGCGGGATGGTTGTGATAAATCGGAAGGATTTGGCGTACGGTAGA GTACGCGGCCTGCACATTTGTTTCTCGTACTCATAAAGTTCGTTCCAAGA ATATGTCACCCCTGTTTGGGGTCGTATGGCGGCTACACAAGAAGCAAAGA ACACCTCATATCAATATAACTCATACGGCAAGGAAGGCCCATTTGGAGCT AGCTCATCATGTAATACTCTGTTCGTCCCCACTTTCGAACCTTCAAATTT ACCTGATTTATTTTCTCCCTCCTAACCTTGATAACAACTCCTACTATATT CCCTATTATAACCCTTTGAATCTTTCGACCTCGAAAACATGTAGATTGGG GAATACGGTCGGCACAACACCCCGGCAGGAATTAAGCATATAATCGACGC CGCCATCAAGGTCTGTCCCGCCCTAGGCGATCTCGCGATTGACCGCACGT GGGCAGGACTGCGTCCGTCAACCCCAGACACCATGCCGGTGCTTGGACCT TTTCCACAGTGCCGTAACCTCTTTATCGCTGGAGGCTACTGGCGAAACGG TGTACTGCTGGCCCCTAAGGCGGCGCAACTGGTCGCCGACACGGTGTGCG GATGCCTCCCTCCTCAGGACGAAGTGTTCCTACGTACGTTTACAGTTGAT CGGTTGATTACTTCAGACGGGCAACGCACGCCAGCCCAAGCTGAACCCGC CGTCGTCTCTGCTGCCACGCCAGCGATACAGCCGCCAAGCGCTGAGGCGT ACTCGTCGGAACTGTCCCAGTCAGACCTTTTGGGGATGGAGCGCGCTGCA TTGGAGGGCTCCAACGACGGGGGCATGTTTTCAGGCCTCGAAGGGCTGGG GACACAGGCGACAGCTATTGAGGAGGTTAGTGGGCAAGACCACCGGAGAT TTTCGTTTTCAGGCAATGAAGAAAATACTTCCTCGCTCCCTGTAGGTTAT GACGTTATATAGTAATAATGACAATTAAACATACTGTAGATGCAATGCGA TATCGTAATGCTCATTTTAGCTTAGTCCCGAACCACAACTGCACGTGGCA CCTGCAACAGGGAGTATTAAAGGATAATATATCACTCGTTGAAGTGGATA GCGCTGTGCCCTCAGCGCCACGAGAGCCGGTCAACGACTATGATGGCAGG TGCGTAGTAAGATCGCGCGACAATAGGCGACGCAATATTACGATGCAATA TAACGAGGATCGGTATGACAATATGAAAAATAACGAGGACCGGGATAGAG ATGTGCTCGCCCAGTGTACCTGAGTGGTGGCACTCAACGAACATTTTGCG TTTTGAATTGAAGGAGGGAACGAGTGAGTGTATATTCCGGAGAGCACTTC TAACAAGTACTGTACCTTTTCTGTACCGATACAGTACCAGAGGAGAGAGC TATATGACAGCCTTAACAGACATCCGGTGGGGTTCGTTCTAGGCTGTTTG TAGTTTCTTCGTCCCCAGCACACTCAACTATTCATGCCGAGATGACTAAC GATTGCACCCATCGCCTACCTACCTAACTATTCTTCTATACATATTCATG TCGAGTCATGCCGAGAGCAGCGATAGATTTTCGGAGAGTAGCTTGAAGGA AGCGAGGTTGGCCAATCGCTTGGTGCAGAAAGGTAGCGACGCCCGACTTG AGGCTTTGTTCGGCGACGGCCCCGATGAGTCGTCCATCCCGGACGCTAAT ATGGTGGACATGAACGTGAAGGCATGGGAGGACGGGGCAGAAGAGGTGGC GAAAATATTAGGAGCTAAGGTT
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Coding sequence (CDS) from alignment at H-elongata_contig72783:692..3063+

>mRNA_H-elongata_contig72783.14955.1 ID=mRNA_H-elongata_contig72783.14955.1|Name=mRNA_H-elongata_contig72783.14955.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2316bp|location=Sequence derived from alignment at H-elongata_contig72783:692..3063+ (Himanthalia elongata Himel1 dioecious)
ACGTCGGCATCTGGGCTCGTGCACGACAGCGGCGGTTCTTCTGTGGATGC
AGTTCTCCTCGAAGACGGTCGAAAGTTTCACGCCAAGGCCTACGTCTCCG
CCACGGGAGCATGGATGCGCGAGTTGATGCCCGTGCCCATGTTGCCACAC
AAAGGGCAGATGATGGCGCTCAGGCAGCCGGGCGGAATACGACGAGAAGG
CGATGCTGGTGCTATCGGTCTGAGGCGCGTTTTCTTCGCCGAGGGGTGCT
ACATTATACCCAAGAGGGACGGTCGCGTTGTGGTGGGATCCACGGTGGAG
ACGTCGGCATCTGGGCTCGTGCACGACAGCGGCGGTTCTTCTGTGGATGC
AGTTCTCCTCGAAGACGGTCGAAAGTTTCACGCCAAGGCCTACGTCTCCG
CCACGGGAGCATGGATGCGCGAGTTGATGCCCGTGCCCATGTTGCCACAC
AAAGGGCAGATGATGGCGCTCAGGCAGCCGGGCGGAATACGACGAGAAGG
CGATGCTGGTGCTATCGGTCTGAGGCGCGTTTTCTTCGCCGAGGGGTGCT
ACATTATACCCAAGAGGGACGGTCGCGTTGTGGTGGGATCCACGGTGGAG
ATTGGGGAATACGGTCGGCACAACACCCCGGCAGGAATTAAGCATATAAT
CGACGCCGCCATCAAGGTCTGTCCCGCCCTAGGCGATCTCGCGATTGACC
GCACGTGGGCAGGACTGCGTCCGTCAACCCCAGACACCATGCCGGTGCTT
GGACCTTTTCCACAGTGCCGTAACCTCTTTATCGCTGGAGGCTACTGGCG
AAACGGTGTACTGCTGGCCCCTAAGGCGGCGCAACTGGTCGCCGACACGG
TGTGCGGATGCCTCCCTCCTCAGGACGAAGTGTTCCTACGTACGTTTACA
GTTGATCGGTTGATTACTTCAGACGGGCAACGCACGCCAGCCCAAGCTGA
ACCCGCCGTCGTCTCTGCTGCCACGCCAGCGATACAGCCGCCAAGCGCTG
AGGCGTACTCGTCGGAACTGTCCCAGTCAGACCTTTTGGGGATGGAGCGC
GCTGCATTGGAGGGCTCCAACGACGGGGGCATGTTTTCAGGCCTCGAAGG
GCTGGGGACACAGGCGACAGCTATTGAGGAGGTTAGTGGGCAAGACCACC
GGAGATTTTCGTTTTCAGGCAATGAAGAAAATACTTCCTCGCTCCCTGTA
GATTGGGGAATACGGTCGGCACAACACCCCGGCAGGAATTAAGCATATAA
TCGACGCCGCCATCAAGGTCTGTCCCGCCCTAGGCGATCTCGCGATTGAC
CGCACGTGGGCAGGACTGCGTCCGTCAACCCCAGACACCATGCCGGTGCT
TGGACCTTTTCCACAGTGCCGTAACCTCTTTATCGCTGGAGGCTACTGGC
GAAACGGTGTACTGCTGGCCCCTAAGGCGGCGCAACTGGTCGCCGACACG
GTGTGCGGATGCCTCCCTCCTCAGGACGAAGTGTTCCTACGTACGTTTAC
AGTTGATCGGTTGATTACTTCAGACGGGCAACGCACGCCAGCCCAAGCTG
AACCCGCCGTCGTCTCTGCTGCCACGCCAGCGATACAGCCGCCAAGCGCT
GAGGCGTACTCGTCGGAACTGTCCCAGTCAGACCTTTTGGGGATGGAGCG
CGCTGCATTGGAGGGCTCCAACGACGGGGGCATGTTTTCAGGCCTCGAAG
GGCTGGGGACACAGGCGACAGCTATTGAGGAGGTTAGTGGGCAAGACCAC
CGGAGATTTTCGTTTTCAGGCAATGAAGAAAATACTTCCTCGCTCCCTGT
AGTGGATAGCGCTGTGCCCTCAGCGCCACGAGAGCCGGTCAACGACTATG
ATGGCAGTGGATAGCGCTGTGCCCTCAGCGCCACGAGAGCCGGTCAACGA
CTATGATGGCAGCGATAGATTTTCGGAGAGTAGCTTGAAGGAAGCGAGGT
TGGCCAATCGCTTGGTGCAGAAAGGTAGCGACGCCCGACTTGAGGCTTTG
TTCGGCGACGGCCCCGATGAGTCGTCCATCCCGGACGCTAATATGGTGGA
CATGAACGTGAAGGCATGGGAGGACGGGGCAGAAGAGGTGGCGAAAATAT
TAGGAGCTAAGGTTCGATAGATTTTCGGAGAGTAGCTTGAAGGAAGCGAG
GTTGGCCAATCGCTTGGTGCAGAAAGGTAGCGACGCCCGACTTGAGGCTT
TGTTCGGCGACGGCCCCGATGAGTCGTCCATCCCGGACGCTAATATGGTG
GACATGAACGTGAAGGCATGGGAGGACGGGGCAGAAGAGGTGGCGAAAAT
ATTAGGAGCTAAGGTT
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