mRNA_H-elongata_contig72774.14952.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig72774.14952.1
Unique NamemRNA_H-elongata_contig72774.14952.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig72774.14952.1 vs. uniprot
Match: D7FS64_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS64_ECTSI)

HSP 1 Score: 193 bits (490), Expect = 1.250e-54
Identity = 91/126 (72.22%), Postives = 108/126 (85.71%), Query Frame = 1
Query:    1 QLREEGQIEKHRDRFSQAAGEWRGMDFGEKIPFEDMARADKDRHLKDLDIAAARNLFTA-SSSVQKHGQGMCSGIGFPGLKALDPDSPHDDLCIVCKQEGDLLCCDFCSVTHHLTCLEPPMTTLPS 375
            QL+EEG +E+HRDRF+QAAGEWR M FGE+IP+EDMA+ADK+RH KDLDIA  RNL  A   +V KHGQGMCS IGFPGLKAL  +SPH+D+C VCK+EGDLLCCDFC+ T+HLTCL+PPM +LPS
Sbjct:   57 QLKEEGVVEQHRDRFAQAAGEWRDMTFGERIPYEDMAKADKERHQKDLDIAT-RNLNAALHGTVPKHGQGMCSAIGFPGLKALAANSPHEDVCAVCKEEGDLLCCDFCTSTYHLTCLDPPMLSLPS 181          
BLAST of mRNA_H-elongata_contig72774.14952.1 vs. uniprot
Match: A0A6H5KW77_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW77_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 4.680e-52
Identity = 85/124 (68.55%), Postives = 100/124 (80.65%), Query Frame = 1
Query:    1 QLREEGQIEKHRDRFSQAAGEWRGMDFGEKIPFEDMARADKDRHLKDLDIAAARNLFTASSSVQKHGQGMCSGIGFPGLKALDPDSPHDDLCIVCKQEGDLLCCDFCSVTHHLTCLEPPMTTLP 372
            QL+EEG +E HRDRF+QAAGEWR M FGE+IP+EDMA+ADK+RH KDLDIA          +V KHGQGMCS IGF GLKAL  +SPH+D+C VCK+EGDLLCCDFC  T+HLTCL+PPM +LP
Sbjct:   57 QLKEEGVVELHRDRFAQAAGEWRDMTFGERIPYEDMAKADKERHQKDLDIATRNFNAALHGTVPKHGQGMCSAIGFSGLKALAANSPHEDVCAVCKEEGDLLCCDFCPSTYHLTCLDPPMLSLP 180          
BLAST of mRNA_H-elongata_contig72774.14952.1 vs. uniprot
Match: UPI000852357D (chromodomain-helicase-DNA-binding protein Mi-2 homolog n=1 Tax=Cyphomyrmex costatus TaxID=456900 RepID=UPI000852357D)

HSP 1 Score: 59.3 bits (142), Expect = 3.560e-9
Identity = 26/64 (40.62%), Postives = 36/64 (56.25%), Query Frame = 1
Query:  181 SSVQKHGQGMCSGIGFPGLKALDPDSPHDDLCIVCKQEGDLLCCDFCSVTHHLTCLEPPMTTLP 372
            +S +K     C G G  G  A + D  H + C VCK  G+LLCCD C+  +H  CL PP++ +P
Sbjct:    4 TSERKWSCAHCGGEGIAG--AAEDDDEHMEFCRVCKDGGELLCCDSCTSAYHTHCLNPPLSEIP 65          
BLAST of mRNA_H-elongata_contig72774.14952.1 vs. uniprot
Match: A0A3M6V1B5_POCDA (PHD-type domain-containing protein n=3 Tax=Pocilloporidae TaxID=46729 RepID=A0A3M6V1B5_POCDA)

HSP 1 Score: 63.2 bits (152), Expect = 4.160e-9
Identity = 20/43 (46.51%), Postives = 35/43 (81.40%), Query Frame = 1
Query:  244 LDPDSPHDDLCIVCKQEGDLLCCDFCSVTHHLTCLEPPMTTLP 372
            +D D  HD++C +CK+ G+LL CD C++ +H++CL+PP+T++P
Sbjct:  345 VDEDDNHDEVCAICKESGELLLCDTCNLVYHMSCLDPPLTSVP 387          
BLAST of mRNA_H-elongata_contig72774.14952.1 vs. uniprot
Match: H3A728_LATCH (Uncharacterized protein n=1 Tax=Latimeria chalumnae TaxID=7897 RepID=H3A728_LATCH)

HSP 1 Score: 62.4 bits (150), Expect = 7.730e-9
Identity = 34/103 (33.01%), Postives = 53/103 (51.46%), Query Frame = 1
Query:   70 GMDFGEKIPFEDMARADKDRHLK-DLDIAAARNLFTASSSVQKHGQGMCSGIGFPGLKALDPDSPHDDLCIVCKQEGDLLCCDFCSVTHHLTCLEPPMTTLPS 375
            G +F     FED+   +K R+LK ++ +    +    S  +    Q  CS + +P     + +  +DD C VC+  G+L+CCD C    HL CL PP+T +PS
Sbjct:  230 GGEFYAPGKFEDLGGKNKSRNLKTNIRMKGGPH----SQKIPFPLQSGCSVLRYPLTSTFELNHKNDDECTVCRDGGELICCDGCPKAFHLNCLIPPLTAIPS 328          
BLAST of mRNA_H-elongata_contig72774.14952.1 vs. uniprot
Match: UPI001ED7FF5B (autoimmune regulator n=1 Tax=Scatophagus argus TaxID=75038 RepID=UPI001ED7FF5B)

HSP 1 Score: 61.6 bits (148), Expect = 1.150e-8
Identity = 36/113 (31.86%), Postives = 53/113 (46.90%), Query Frame = 1
Query:   88 KIPFEDMARADKDRHLKDLDIAAARNLFTASSSVQKHGQGMCSG-----------------IGFPGLKALDPDSPHDDLCIVCKQEGDLLCCDFCSVTHHLTCLEPPMTTLPS 375
            K+P    AR  +  H+K    +  + L +   S++  G+  CSG                     G  A D    +DD C +CK  G+L+CCD C    HLTCL+PP+T++PS
Sbjct:   13 KLPVSHEAR--EKMHVKQAFSSDDKPLGSTRKSIKTTGEFHCSGQSEETNGSSKCKAAKNIFHHKGETATDMVHYNDDECAMCKDGGELICCDGCPRAFHLTCLDPPLTSIPS 123          
BLAST of mRNA_H-elongata_contig72774.14952.1 vs. uniprot
Match: UPI001CDC81D1 (chromodomain-helicase-DNA-binding protein Mi-2 homolog isoform X1 n=3 Tax=Aphidius gifuensis TaxID=684658 RepID=UPI001CDC81D1)

HSP 1 Score: 62.0 bits (149), Expect = 1.180e-8
Identity = 26/54 (48.15%), Postives = 32/54 (59.26%), Query Frame = 1
Query:  211 CSGIGFPGLKALDPDSPHDDLCIVCKQEGDLLCCDFCSVTHHLTCLEPPMTTLP 372
            C G G  G  A D D  H + C VCK  G+LLCCD C+  +H  CL PP+T +P
Sbjct:  410 CEGEGITG--AADDDDEHMEFCRVCKDGGELLCCDSCTSAYHTHCLNPPLTEIP 461          
BLAST of mRNA_H-elongata_contig72774.14952.1 vs. uniprot
Match: UPI0003F0813A (PHD finger protein 21A-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0813A)

HSP 1 Score: 61.2 bits (147), Expect = 1.260e-8
Identity = 22/38 (57.89%), Postives = 31/38 (81.58%), Query Frame = 1
Query:  262 HDDLCIVCKQEGDLLCCDFCSVTHHLTCLEPPMTTLPS 375
            HDD+C VCKQ G+LL CD CS+ +HL CL+PP++ +P+
Sbjct:  132 HDDICAVCKQSGELLMCDTCSLVYHLGCLDPPLSFIPA 169          
BLAST of mRNA_H-elongata_contig72774.14952.1 vs. uniprot
Match: A7RH46_NEMVE (Predicted protein n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7RH46_NEMVE)

HSP 1 Score: 61.6 bits (148), Expect = 1.400e-8
Identity = 22/43 (51.16%), Postives = 32/43 (74.42%), Query Frame = 1
Query:  247 DPDSPHDDLCIVCKQEGDLLCCDFCSVTHHLTCLEPPMTTLPS 375
            D D  H+D C  CK  G+LL CD C++ +HL+CL+PP+TT+P+
Sbjct:  316 DEDDDHEDACSECKASGELLMCDTCTLVYHLSCLDPPLTTIPT 358          
BLAST of mRNA_H-elongata_contig72774.14952.1 vs. uniprot
Match: A0A8C7HXE2_ONCKI (Autoimmune regulator n=1 Tax=Oncorhynchus kisutch TaxID=8019 RepID=A0A8C7HXE2_ONCKI)

HSP 1 Score: 61.2 bits (147), Expect = 1.660e-8
Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 1
Query:  262 HDDLCIVCKQEGDLLCCDFCSVTHHLTCLEPPMTTLPS 375
            +DD C VCK  G+L+CCD C   +HLTCL+PP+TT+PS
Sbjct:   99 NDDECAVCKDGGELICCDGCPRAYHLTCLDPPLTTIPS 136          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72774.14952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FS64_ECTSI1.250e-5472.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KW77_9PHAE4.680e-5268.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI000852357D3.560e-940.63chromodomain-helicase-DNA-binding protein Mi-2 hom... [more]
A0A3M6V1B5_POCDA4.160e-946.51PHD-type domain-containing protein n=3 Tax=Pocillo... [more]
H3A728_LATCH7.730e-933.01Uncharacterized protein n=1 Tax=Latimeria chalumna... [more]
UPI001ED7FF5B1.150e-831.86autoimmune regulator n=1 Tax=Scatophagus argus Tax... [more]
UPI001CDC81D11.180e-848.15chromodomain-helicase-DNA-binding protein Mi-2 hom... [more]
UPI0003F0813A1.260e-857.89PHD finger protein 21A-like n=1 Tax=Saccoglossus k... [more]
A7RH46_NEMVE1.400e-851.16Predicted protein n=2 Tax=Nematostella vectensis T... [more]
A0A8C7HXE2_ONCKI1.660e-860.53Autoimmune regulator n=1 Tax=Oncorhynchus kisutch ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72774contigH-elongata_contig72774:46..711 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score194.5
Seed ortholog evalue2.9e-47
Seed eggNOG ortholog2880.D7FS64
EggNOG free text desc.peripheral T cell tolerance induction
EggNOG OGsCOG0553@1,KOG0383@2759
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size375
Cds size375
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931129.8167799-CDS-H-elongata_contig72774:45..2211622931129.8167799-CDS-H-elongata_contig72774:45..221Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72774 46..221 -
1691679710.3461173-CDS-H-elongata_contig72774:45..2211691679710.3461173-CDS-H-elongata_contig72774:45..221Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72774 46..221 -
1622931129.8512847-CDS-H-elongata_contig72774:512..7111622931129.8512847-CDS-H-elongata_contig72774:512..711Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72774 513..711 -
1691679710.3588834-CDS-H-elongata_contig72774:512..7111691679710.3588834-CDS-H-elongata_contig72774:512..711Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72774 513..711 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72774.14952.1prot_H-elongata_contig72774.14952.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig72774 46..711 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig72774.14952.1

>prot_H-elongata_contig72774.14952.1 ID=prot_H-elongata_contig72774.14952.1|Name=mRNA_H-elongata_contig72774.14952.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=125bp
QLREEGQIEKHRDRFSQAAGEWRGMDFGEKIPFEDMARADKDRHLKDLDI
AAARNLFTASSSVQKHGQGMCSGIGFPGLKALDPDSPHDDLCIVCKQEGD
LLCCDFCSVTHHLTCLEPPMTTLPS
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mRNA from alignment at H-elongata_contig72774:46..711-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig72774.14952.1 ID=mRNA_H-elongata_contig72774.14952.1|Name=mRNA_H-elongata_contig72774.14952.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=666bp|location=Sequence derived from alignment at H-elongata_contig72774:46..711- (Himanthalia elongata Himel1 dioecious)
CAGCTCAGGGAAGAGGGACAGATTGAGAAGCACCGCGATCGATTCTCGCA AGCCGCCGGAGAGTGGAGGGGCATGGATTTCGGGGAGAAGATTCCGTTCG AAGACATGGCCAGGGCGGACAAAGATCGACATCTGAAAGATCTCGACATT GCCGCCGCTAGGAATCTCTTCACGGCGTCATCCTCTGTTCAGAAGCACGG TGCGCGCGCGCGCCCGCGCTGATGTTTACCGTGGATTTATGTCTTTTTGT GTATTGTTCCTAGTAGGGCAAAAGGGGAGGGTGGAGGGGAAGGCCATGAT TCTCCTTCCCTCGTTATTGTGGTGCTGGCTTCAAGGACTCTCGAGTCTGC GTCATAAGTTGGGACTAAAATGTGGTAATATTCTAGAGAGCGTGCGACGT GGTCGTATCTCTTTTCCAGGCCTCTTTTAAGTATTTATACTAAATTCACT ATGCGCCCATGACATGTGTTGTCGATTCTGCCGTGTGCAGGTCAAGGCAT GTGTTCGGGGATCGGCTTTCCTGGGTTGAAGGCGCTCGACCCCGACTCTC CTCATGACGACCTGTGCATCGTGTGCAAGCAAGAGGGAGACCTCCTCTGT TGTGATTTTTGTTCGGTTACCCACCACCTCACCTGTTTGGAGCCTCCCAT GACAACACTACCATCG
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Coding sequence (CDS) from alignment at H-elongata_contig72774:46..711-

>mRNA_H-elongata_contig72774.14952.1 ID=mRNA_H-elongata_contig72774.14952.1|Name=mRNA_H-elongata_contig72774.14952.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=750bp|location=Sequence derived from alignment at H-elongata_contig72774:46..711- (Himanthalia elongata Himel1 dioecious)
CAGCTCAGGGAAGAGGGACAGATTGAGAAGCACCGCGATCGATTCTCGCA
AGCCGCCGGAGAGTGGAGGGGCATGGATTTCGGGGAGAAGATTCCGTTCG
AAGACATGGCCAGGGCGGACAAAGATCGACATCTGAAAGATCTCGACATT
GCCGCCGCTAGGAATCTCTTCACGGCGTCATCCTCTGTTCAGAAGCACGC
AGCTCAGGGAAGAGGGACAGATTGAGAAGCACCGCGATCGATTCTCGCAA
GCCGCCGGAGAGTGGAGGGGCATGGATTTCGGGGAGAAGATTCCGTTCGA
AGACATGGCCAGGGCGGACAAAGATCGACATCTGAAAGATCTCGACATTG
CCGCCGCTAGGAATCTCTTCACGGCGTCATCCTCTGTTCAGAAGCACGGT
CAAGGCATGTGTTCGGGGATCGGCTTTCCTGGGTTGAAGGCGCTCGACCC
CGACTCTCCTCATGACGACCTGTGCATCGTGTGCAAGCAAGAGGGAGACC
TCCTCTGTTGTGATTTTTGTTCGGTTACCCACCACCTCACCTGTTTGGAG
CCTCCCATGACAACACTACCATCGGTCAAGGCATGTGTTCGGGGATCGGC
TTTCCTGGGTTGAAGGCGCTCGACCCCGACTCTCCTCATGACGACCTGTG
CATCGTGTGCAAGCAAGAGGGAGACCTCCTCTGTTGTGATTTTTGTTCGG
TTACCCACCACCTCACCTGTTTGGAGCCTCCCATGACAACACTACCATCG
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