mRNA_H-elongata_contig7277.14951.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7277.14951.1
Unique NamemRNA_H-elongata_contig7277.14951.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7277.14951.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7277contigH-elongata_contig7277:680..1579 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.7
Seed ortholog evalue6.5e-18
Seed eggNOG ortholog2880.D7FLD3
Preferred nameMYO16
KEGG koko:K08803,ko:K17481
KEGG Pathwayko04140,ko05200,ko05219,map04140,map05200,map05219
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
EC2.7.11.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko01009,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-12_007730.1
Exons3
Model size296
Cds size294
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7277.14951.1prot_H-elongata_contig7277.14951.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7277 680..1579 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931129.7005625-CDS-H-elongata_contig7277:679..8571622931129.7005625-CDS-H-elongata_contig7277:679..857Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7277 680..857 +
1691679710.3131561-CDS-H-elongata_contig7277:679..8571691679710.3131561-CDS-H-elongata_contig7277:679..857Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7277 680..857 +
1622931129.7147686-CDS-H-elongata_contig7277:1170..12171622931129.7147686-CDS-H-elongata_contig7277:1170..1217Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7277 1171..1217 +
1691679710.3266788-CDS-H-elongata_contig7277:1170..12171691679710.3266788-CDS-H-elongata_contig7277:1170..1217Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7277 1171..1217 +
1622931129.7264755-CDS-H-elongata_contig7277:1510..15791622931129.7264755-CDS-H-elongata_contig7277:1510..1579Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7277 1511..1579 +
1691679710.3357074-CDS-H-elongata_contig7277:1510..15791691679710.3357074-CDS-H-elongata_contig7277:1510..1579Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7277 1511..1579 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7277.14951.1

>prot_H-elongata_contig7277.14951.1 ID=prot_H-elongata_contig7277.14951.1|Name=mRNA_H-elongata_contig7277.14951.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
GKAVKVLLEFGADPSATDSHGARPDDVIGMGGSGDLEPSCKRELSEIVVN
HRTKIKGRNESPSSLECVVDFLRAKVSELEDQLGRARRDHLEVLAYLT
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mRNA from alignment at H-elongata_contig7277:680..1579+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7277.14951.1 ID=mRNA_H-elongata_contig7277.14951.1|Name=mRNA_H-elongata_contig7277.14951.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=900bp|location=Sequence derived from alignment at H-elongata_contig7277:680..1579+ (Himanthalia elongata Himel1 dioecious)
GGAAAGGCCGTCAAAGTCCTGCTCGAGTTTGGAGCAGACCCATCCGCAAC
AGACAGTCACGGAGCCCGCCCCGACGATGTCATTGGGATGGGCGGTTCTG
GAGACTTGGAGCCTTCGTGCAAGCGAGAGCTGAGTGAGATCGTTGTCAAC
CACCGCACGAAAATAAAAGGGCGGAACGGTGAGTGGGGCGTACCTTGCAT
ATGGTGGACATGATGAGCACTATTATGGTTCTTTTTCATGCCGCTGACTA
AAAAACAAATGAGCGGTCGGCACCATAAAAAATCTGATATGGTAAAATCG
ATTACGGTGATATATTGTGTTACTTTACGAAACTATCGCGTTGGCGAAGA
TAGAAGGGGTTATTATCTCAACGACAATGATGTTATATTTGCGGTCGTGA
TTACCACGTCAATTTTTACTCTTGAAAGGTCATCGTCATGTGCGTGTCAT
CAGTAAGATTCTAACTCTACACCCTCTACGCCCTTAACCAGAATCACCAT
CGTCGCTGGAGTGTGTCGTGGATTTCCTACGAGCAAAGGTGATGTCCAAC
TCGTACTAGGCATGTTTTGAAAAATATAGCGCTGTTTAACATTACCTTGA
CGGCAAGGAAAGCAGTCTCTCGTTCGGTACTGAAGATGGGGTACCTGAAT
CCAGGCAAGGATCTCAGTAGCCAGCATCGTGCTGTTTCTACCAAACAAGG
CGTTTTCCCCTTTACTCCGGAGCTGGGGAAATCCATACAATATTACTGAC
ATCTAGTTGTTCATGAGTACACAATGTGCCCCGCTTCCTAATTTTGCATC
GTCGTTGTAACGTTAATGCTTAACGCTATAGGTTAGTGAGCTTGAGGATC
AGCTAGGAAGGGCGAGAAGAGACCATTTAGAGGTGCTGGCGTACTTGACG
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Coding sequence (CDS) from alignment at H-elongata_contig7277:680..1579+

>mRNA_H-elongata_contig7277.14951.1 ID=mRNA_H-elongata_contig7277.14951.1|Name=mRNA_H-elongata_contig7277.14951.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig7277:680..1579+ (Himanthalia elongata Himel1 dioecious)
GGAAAGGCCGTCAAAGTCCTGCTCGAGTTTGGAGCAGACCCATCCGCAAC
AGACAGTCACGGAGCCCGCCCCGACGATGTCATTGGGATGGGCGGTTCTG
GAGACTTGGAGCCTTCGTGCAAGCGAGAGCTGAGTGAGATCGTTGTCAAC
CACCGCACGAAAATAAAAGGGCGGAACGGGAAAGGCCGTCAAAGTCCTGC
TCGAGTTTGGAGCAGACCCATCCGCAACAGACAGTCACGGAGCCCGCCCC
GACGATGTCATTGGGATGGGCGGTTCTGGAGACTTGGAGCCTTCGTGCAA
GCGAGAGCTGAGTGAGATCGTTGTCAACCACCGCACGAAAATAAAAGGGC
GGAACGAATCACCATCGTCGCTGGAGTGTGTCGTGGATTTCCTACGAGCA
AAGAATCACCATCGTCGCTGGAGTGTGTCGTGGATTTCCTACGAGCAAAG
GTTAGTGAGCTTGAGGATCAGCTAGGAAGGGCGAGAAGAGACCATTTAGA
GGTGCTGGCGTACTTGACGGTTAGTGAGCTTGAGGATCAGCTAGGAAGGG
CGAGAAGAGACCATTTAGAGGTGCTGGCGTACTTGACG
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