mRNA_H-elongata_contig72752.14949.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig72752.14949.1
Unique NamemRNA_H-elongata_contig72752.14949.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig72752.14949.1 vs. uniprot
Match: D8LLV6_ECTSI (tRNA-intron lyase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLV6_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 4.010e-39
Identity = 65/86 (75.58%), Postives = 70/86 (81.40%), Query Frame = 1 
Query:    1 LTAEESWRYCCARRQDFPLMFAVYRHFRAQRFTVQAGHKYGAHFVLYEGSPDEYHSRYCVHVMGCSSGGSGGDSWGHMKTMTRLMP 258
            L+AEE+WRYCC RR DFP MFAVYRHFR + FTV  GHKYGAH+VLYEG PDE HSRYCVHV G   GG  GDSW H+KTMTRLMP
Sbjct:  190 LSAEEAWRYCCNRRPDFPAMFAVYRHFRIRSFTVDTGHKYGAHYVLYEGPPDECHSRYCVHVTG---GGGRGDSWSHVKTMTRLMP 272
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BLAST of mRNA_H-elongata_contig72752.14949.1 vs. uniprot
Match: A0A139AB28_GONPJ (tRNA-splicing endonuclease subunit Sen2 n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AB28_GONPJ)

HSP 1 Score: 55.8 bits (133), Expect = 2.930e-7
Identity = 26/68 (38.24%), Postives = 41/68 (60.29%), Query Frame = 1 
Query:    1 LTAEESWRYCCARRQDFPLMFAVYRHFRAQRFTVQAGHKYGAHFVLYEGSPDEYHSRYCVHVMGCSSG 204
            L++ E W +  A+   FPL++AVY+H+R Q + V++G  Y A +VLY   P   HS + V V+   +G
Sbjct:  127 LSSSELWAHFTAQDPRFPLLYAVYKHYRKQGWVVRSGAVYAADYVLYRTGPAYDHSEFVVTVLSLETG 194
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BLAST of mRNA_H-elongata_contig72752.14949.1 vs. uniprot
Match: M4YIW8_THEXX (tRNA intron endonuclease n=1 Tax=Thermoplasmatales archaeon (strain BRNA1) TaxID=1054217 RepID=M4YIW8_THEXX)

HSP 1 Score: 55.5 bits (132), Expect = 5.200e-7
Identity = 25/53 (47.17%), Postives = 32/53 (60.38%), Query Frame = 1 
Query:   40 RQDFPLMFAVYRHFRAQRFTVQAGHKYGAHFVLYEGSPDEYHSRYCVHVMGCS 198
            + +F L    Y   RA+   V+ G KYG HF +YEGSPDE H+RY VH +  S
Sbjct:  256 QDEFDLRLKAYYDLRARGLVVKTGFKYGTHFRVYEGSPDECHARYLVHAVTAS 308
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BLAST of mRNA_H-elongata_contig72752.14949.1 vs. uniprot
Match: A0A0W7TI51_9ARCH (Endonuclease n=1 Tax=Candidatus Methanomethylophilus sp. 1R26 TaxID=1769296 RepID=A0A0W7TI51_9ARCH)

HSP 1 Score: 53.5 bits (127), Expect = 2.570e-6
Identity = 23/49 (46.94%), Postives = 30/49 (61.22%), Query Frame = 1 
Query:   40 RQDFPLMFAVYRHFRAQRFTVQAGHKYGAHFVLYEGSPDEYHSRYCVHV 186
            + +F L    Y   R++   V+ G KYG HF +YEGSPDE H+RY VH 
Sbjct:  255 QNEFGLRLRAYEDLRSRGLIVKTGFKYGTHFRVYEGSPDECHARYLVHA 303
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BLAST of mRNA_H-elongata_contig72752.14949.1 vs. uniprot
Match: A0A7S3Z2U5_9EUKA (tRNA-intron lyase (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z2U5_9EUKA)

HSP 1 Score: 51.6 bits (122), Expect = 8.860e-6
Identity = 22/47 (46.81%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:   46 DFPLMFAVYRHFRAQRFTVQAGHKYGAHFVLYEGSPDEYHSRYCVHV 186
             F   +AVY +FR++ + V++G K+GA F+LYEGSP  +H +Y V V
Sbjct:   96 SFSARYAVYHYFRSRGWIVRSGLKFGADFLLYEGSPSRFHGKYSVIV 142
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BLAST of mRNA_H-elongata_contig72752.14949.1 vs. uniprot
Match: A0A0A7LD52_9ARCH (EndA protein n=1 Tax=Candidatus Methanoplasma termitum TaxID=1577791 RepID=A0A0A7LD52_9ARCH)

HSP 1 Score: 51.6 bits (122), Expect = 1.190e-5
Identity = 22/48 (45.83%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:   40 RQDFPLMFAVYRHFRAQRFTVQAGHKYGAHFVLYEGSPDEYHSRYCVH 183
            +++F L    +R  R +   V+ G KYGAHF +YEGSPD  H++Y VH
Sbjct:  256 QEEFELRLDAFRDMRKRGMVVKTGFKYGAHFRVYEGSPDTDHAKYLVH 303
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BLAST of mRNA_H-elongata_contig72752.14949.1 vs. uniprot
Match: M4BAF9_HYAAE (tRNA-intron lyase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BAF9_HYAAE)

HSP 1 Score: 50.8 bits (120), Expect = 1.940e-5
Identity = 25/68 (36.76%), Postives = 38/68 (55.88%), Query Frame = 1 
Query:   49 FPLMFAVYRHFRAQRFTVQAGHKYGAHFVLYEGSPDEYHSRYCVHVMGCSSGGSGGDSWGHMKTMTRL 252
            F   F +Y+HFR + +  + G  YGAH+VLY GS + +HS Y V+V           SW  +++ TR+
Sbjct:   96 FTRTFVIYQHFRRRGWIPRPGLNYGAHYVLYRGSAEAFHSEYIVYVQRDGEV----SSWNSIQSHTRI 159
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72752.14949.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LLV6_ECTSI4.010e-3975.58tRNA-intron lyase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A139AB28_GONPJ2.930e-738.24tRNA-splicing endonuclease subunit Sen2 n=1 Tax=Go... [more]
M4YIW8_THEXX5.200e-747.17tRNA intron endonuclease n=1 Tax=Thermoplasmatales... [more]
A0A0W7TI51_9ARCH2.570e-646.94Endonuclease n=1 Tax=Candidatus Methanomethylophil... [more]
A0A7S3Z2U5_9EUKA8.860e-646.81tRNA-intron lyase (Fragment) n=1 Tax=Lotharella gl... [more]
A0A0A7LD52_9ARCH1.190e-545.83EndA protein n=1 Tax=Candidatus Methanoplasma term... [more]
M4BAF9_HYAAE1.940e-536.76tRNA-intron lyase n=1 Tax=Hyaloperonospora arabido... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72752contigH-elongata_contig72752:2370..2854 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score143.7
Seed ortholog evalue4.1e-32
Seed eggNOG ortholog2880.D8LLV6
Preferred nameTSEN2
KEGG rclassRC00002,RC00055,RC00523
KEGG koko:K01868,ko:K06133,ko:K15322,ko:K15436
KEGG ReactionR01625,R03663
KEGG Pathwayko00770,ko00970,map00770,map00970
KEGG ModuleM00359,M00360
GOsGO:0000003,GO:0000213,GO:0000214,GO:0000278,GO:0000281,GO:0000379,GO:0000394,GO:0000910,GO:0003006,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0004549,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006139,GO:0006379,GO:0006388,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0007049,GO:0007275,GO:0008033,GO:0008150,GO:0008152,GO:0008356,GO:0008380,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010069,GO:0010070,GO:0010154,GO:0010467,GO:0015630,GO:0016020,GO:0016070,GO:0016071,GO:0016787,GO:0016788,GO:0016892,GO:0016894,GO:0019867,GO:0022402,GO:0022414,GO:0031090,GO:0031966,GO:0031967,GO:0031968,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0051301,GO:0061458,GO:0061640,GO:0070013,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0098588,GO:0098805,GO:0140098,GO:0140101,GO:1901360,GO:1902494,GO:1902555,GO:1903047,GO:1905348
EggNOG free text desc.tRNA-intron endonuclease activity
EggNOG OGsCOG1676@1,KOG4685@2759
EC3.1.27.9,6.1.1.3
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptiontRNA endonuclease-like domain
Ec32 orthologEc-14_001840.1
Exons2
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931129.570089-CDS-H-elongata_contig72752:2369..24611622931129.570089-CDS-H-elongata_contig72752:2369..2461Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72752 2370..2461 +
1691679710.2377124-CDS-H-elongata_contig72752:2369..24611691679710.2377124-CDS-H-elongata_contig72752:2369..2461Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72752 2370..2461 +
1622931129.5856795-CDS-H-elongata_contig72752:2688..28541622931129.5856795-CDS-H-elongata_contig72752:2688..2854Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72752 2689..2854 +
1691679710.2512085-CDS-H-elongata_contig72752:2688..28541691679710.2512085-CDS-H-elongata_contig72752:2688..2854Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72752 2689..2854 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72752.14949.1prot_H-elongata_contig72752.14949.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig72752 2370..2854 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig72752.14949.1

>prot_H-elongata_contig72752.14949.1 ID=prot_H-elongata_contig72752.14949.1|Name=mRNA_H-elongata_contig72752.14949.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
LTAEESWRYCCARRQDFPLMFAVYRHFRAQRFTVQAGHKYGAHFVLYEGS
PDEYHSRYCVHVMGCSSGGSGGDSWGHMKTMTRLMP
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mRNA from alignment at H-elongata_contig72752:2370..2854+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig72752.14949.1 ID=mRNA_H-elongata_contig72752.14949.1|Name=mRNA_H-elongata_contig72752.14949.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=485bp|location=Sequence derived from alignment at H-elongata_contig72752:2370..2854+ (Himanthalia elongata Himel1 dioecious)
TTGACCGCAGAGGAGAGTTGGCGATATTGCTGCGCTCGGCGGCAAGACTT
CCCGCTCATGTTCGCCGTGTATCGCCACTTTCGAGCACAGAGGTGTACCC
TCCTGGAAAATACGTCCATGGTGCTAGCTACCCTCGCGTGGTTATCTACC
TTTTTTCGGTGAATCGGTCGATAGTGGATAAACCGAACCTGAAAACGTCA
GTACCGACAAGCACACGCAAGCCCCCAACTGTCTATCGACCTCAGACAAT
AAACGCCAACAAGATCTGAAGTTTATATCGAACTCATCGACAGCTAACTC
TTGCACCTAACTTAAACAGGTTTACCGTGCAAGCCGGCCATAAGTATGGG
GCTCACTTCGTGCTCTATGAGGGGTCGCCTGACGAGTACCACTCGAGGTA
CTGCGTACACGTGATGGGCTGCAGCAGCGGGGGCAGTGGTGGTGATTCTT
GGGGGCACATGAAGACCATGACACGACTCATGCCT
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Coding sequence (CDS) from alignment at H-elongata_contig72752:2370..2854+

>mRNA_H-elongata_contig72752.14949.1 ID=mRNA_H-elongata_contig72752.14949.1|Name=mRNA_H-elongata_contig72752.14949.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig72752:2370..2854+ (Himanthalia elongata Himel1 dioecious)
TTGACCGCAGAGGAGAGTTGGCGATATTGCTGCGCTCGGCGGCAAGACTT
CCCGCTCATGTTCGCCGTGTATCGCCACTTTCGAGCACAGAGTTGACCGC
AGAGGAGAGTTGGCGATATTGCTGCGCTCGGCGGCAAGACTTCCCGCTCA
TGTTCGCCGTGTATCGCCACTTTCGAGCACAGAGGTTTACCGTGCAAGCC
GGCCATAAGTATGGGGCTCACTTCGTGCTCTATGAGGGGTCGCCTGACGA
GTACCACTCGAGGTACTGCGTACACGTGATGGGCTGCAGCAGCGGGGGCA
GTGGTGGTGATTCTTGGGGGCACATGAAGACCATGACACGACTCATGCCT
GTTTACCGTGCAAGCCGGCCATAAGTATGGGGCTCACTTCGTGCTCTATG
AGGGGTCGCCTGACGAGTACCACTCGAGGTACTGCGTACACGTGATGGGC
TGCAGCAGCGGGGGCAGTGGTGGTGATTCTTGGGGGCACATGAAGACCAT
GACACGACTCATGCCT
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