mRNA_H-elongata_contig72751.14948.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig72751.14948.1
Unique NamemRNA_H-elongata_contig72751.14948.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72751.14948.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72751contigH-elongata_contig72751:1009..1617 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size273
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931129.5171626-CDS-H-elongata_contig72751:1008..12011622931129.5171626-CDS-H-elongata_contig72751:1008..1201Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72751 1009..1201 +
1691679710.2147517-CDS-H-elongata_contig72751:1008..12011691679710.2147517-CDS-H-elongata_contig72751:1008..1201Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72751 1009..1201 +
1622931129.5316455-CDS-H-elongata_contig72751:1538..16151622931129.5316455-CDS-H-elongata_contig72751:1538..1615Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72751 1539..1615 +
1691679710.2258902-CDS-H-elongata_contig72751:1538..16151691679710.2258902-CDS-H-elongata_contig72751:1538..1615Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72751 1539..1615 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72751.14948.1prot_H-elongata_contig72751.14948.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig72751 1009..1615 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig72751.14948.1

>prot_H-elongata_contig72751.14948.1 ID=prot_H-elongata_contig72751.14948.1|Name=mRNA_H-elongata_contig72751.14948.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
FDLEFFLDDPKPFFMFAKVRPTTVLPVHRSRLKSRTLVLGAVVGRCSRPE
IRSLLGWSLLPWRNGPLSREIHPVADSPLPQVAGDPRETP
back to top

mRNA from alignment at H-elongata_contig72751:1009..1617+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig72751.14948.1 ID=mRNA_H-elongata_contig72751.14948.1|Name=mRNA_H-elongata_contig72751.14948.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=609bp|location=Sequence derived from alignment at H-elongata_contig72751:1009..1617+ (Himanthalia elongata Himel1 dioecious)
TTCGACCTCGAATTCTTCCTCGATGATCCTAAGCCTTTCTTCATGTTCGC
CAAGGTGCGCCCGACGACGGTATTGCCCGTTCACCGAAGCAGGCTGAAGT
CAAGAACGCTTGTTTTGGGGGCAGTTGTTGGGCGTTGTTCGAGGCCTGAA
ATCCGCTCGCTTCTCGGTTGGTCTCTTCTGCCTTGGAGGAACGGTATGAG
GAACGGTCCTGTATGAGGAACGGTATGGTCCTGTATAAGTGGTTGGTGCA
GGCTCGTGTCTTGCGTGGCGCGACTCTCCGAAAACGTTGAGCAGATTGTC
GTGCCGCAGCCCTCGCAACGCCTCGCAACTAGTGGGTCTCGCGGTTTGAC
GCGGTTCGACGAGCTTGGGCGAGTAATCACTAGACTAATATTCGGCATCA
CCGGAGGACGGAGCATGTGCGTTTGTTTGTATTTGTCAAATTGCTCATAA
CCACGCAATCTAGTAATAGTCATTCTATGCTACTCGCATTGGTGTGTGTG
CGTTTTTGTGGATGGGGGCGATGGAGACAGGCCCTCTATCCAGGGAAATA
CACCCCGTCGCCGACTCACCGCTTCCTCAAGTTGCTGGAGACCCGAGGGA
AACTCCTCC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig72751:1009..1617+

>mRNA_H-elongata_contig72751.14948.1 ID=mRNA_H-elongata_contig72751.14948.1|Name=mRNA_H-elongata_contig72751.14948.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig72751:1009..1617+ (Himanthalia elongata Himel1 dioecious)
TTCGACCTCGAATTCTTCCTCGATGATCCTAAGCCTTTCTTCATGTTCGC
CAAGGTGCGCCCGACGACGGTATTGCCCGTTCACCGAAGCAGGCTGAAGT
CAAGAACGCTTGTTTTGGGGGCAGTTGTTGGGCGTTGTTCGAGGCCTGAA
ATCCGCTCGCTTCTCGGTTGGTCTCTTCTGCCTTGGAGGAACGTTCGACC
TCGAATTCTTCCTCGATGATCCTAAGCCTTTCTTCATGTTCGCCAAGGTG
CGCCCGACGACGGTATTGCCCGTTCACCGAAGCAGGCTGAAGTCAAGAAC
GCTTGTTTTGGGGGCAGTTGTTGGGCGTTGTTCGAGGCCTGAAATCCGCT
CGCTTCTCGGTTGGTCTCTTCTGCCTTGGAGGAACGGCCCTCTATCCAGG
GAAATACACCCCGTCGCCGACTCACCGCTTCCTCAAGTTGCTGGAGACCC
GAGGGAAACTCCTGCCCTCTATCCAGGGAAATACACCCCGTCGCCGACTC
ACCGCTTCCTCAAGTTGCTGGAGACCCGAGGGAAACTCCT
back to top