mRNA_H-elongata_contig72709.14944.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig72709.14944.1
Unique NamemRNA_H-elongata_contig72709.14944.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig72709.14944.1 vs. uniprot
Match: A0A6H5JNM9_9PHAE (TauD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNM9_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 3.620e-11
Identity = 35/66 (53.03%), Postives = 44/66 (66.67%), Query Frame = 1 
Query:   40 STTRVDWLRRHCTSSTARDLRRRYGATAAGVACQPTRRVFWGADVFAA---ENNSP--CLEYDQIV 222
            ST  +DWLRRHCTS+TARDLRRR+G  A G    P R V WGADVF+A   +   P  C+ Y+ ++
Sbjct:   93 STIPIDWLRRHCTSATARDLRRRHGGPADGPGLHP-RPVLWGADVFSAGTPQQQQPPACMSYEDVM 157
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72709.14944.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JNM9_9PHAE3.620e-1153.03TauD domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72709contigH-elongata_contig72709:1243..1483 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size242
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931129.0675638-CDS-H-elongata_contig72709:1242..14821622931129.0675638-CDS-H-elongata_contig72709:1242..1482Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72709 1243..1482 +
1691679709.959087-CDS-H-elongata_contig72709:1242..14821691679709.959087-CDS-H-elongata_contig72709:1242..1482Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72709 1243..1482 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72709.14944.1prot_H-elongata_contig72709.14944.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig72709 1243..1482 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig72709.14944.1

>prot_H-elongata_contig72709.14944.1 ID=prot_H-elongata_contig72709.14944.1|Name=mRNA_H-elongata_contig72709.14944.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
LRWSADPTQPNQESTTRVDWLRRHCTSSTARDLRRRYGATAAGVACQPTR
RVFWGADVFAAENNSPCLEYDQIVDACQSQ
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mRNA from alignment at H-elongata_contig72709:1243..1483+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig72709.14944.1 ID=mRNA_H-elongata_contig72709.14944.1|Name=mRNA_H-elongata_contig72709.14944.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=241bp|location=Sequence derived from alignment at H-elongata_contig72709:1243..1483+ (Himanthalia elongata Himel1 dioecious)
CTGCGTTGGAGCGCAGATCCCACCCAACCAAACCAGGAGTCCACCACCCG
AGTAGACTGGCTTCGACGACACTGTACCTCGTCGACTGCGCGAGACCTCC
GCCGGCGCTACGGTGCCACCGCCGCCGGGGTTGCTTGCCAGCCCACCCGT
CGTGTATTTTGGGGGGCGGACGTCTTCGCTGCTGAAAACAATAGTCCGTG
CCTGGAGTACGATCAGATCGTGGACGCTTGCCAATCGCAAC
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Coding sequence (CDS) from alignment at H-elongata_contig72709:1243..1483+

>mRNA_H-elongata_contig72709.14944.1 ID=mRNA_H-elongata_contig72709.14944.1|Name=mRNA_H-elongata_contig72709.14944.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig72709:1243..1483+ (Himanthalia elongata Himel1 dioecious)
CTGCGTTGGAGCGCAGATCCCACCCAACCAAACCAGGAGTCCACCACCCG
AGTAGACTGGCTTCGACGACACTGTACCTCGTCGACTGCGCGAGACCTCC
GCCGGCGCTACGGTGCCACCGCCGCCGGGGTTGCTTGCCAGCCCACCCGT
CGTGTATTTTGGGGGGCGGACGTCTTCGCTGCTGAAAACAATAGTCCGTG
CCTGGAGTACGATCAGATCGTGGACGCTTGCCAATCGCAACTGCGTTGGA
GCGCAGATCCCACCCAACCAAACCAGGAGTCCACCACCCGAGTAGACTGG
CTTCGACGACACTGTACCTCGTCGACTGCGCGAGACCTCCGCCGGCGCTA
CGGTGCCACCGCCGCCGGGGTTGCTTGCCAGCCCACCCGTCGTGTATTTT
GGGGGGCGGACGTCTTCGCTGCTGAAAACAATAGTCCGTGCCTGGAGTAC
GATCAGATCGTGGACGCTTGCCAATCGCAA
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