mRNA_H-elongata_contig72708.14943.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig72708.14943.1 vs. uniprot
Match: D8LPY7_ECTSI (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPY7_ECTSI) HSP 1 Score: 128 bits (322), Expect = 1.590e-32 Identity = 67/104 (64.42%), Postives = 74/104 (71.15%), Query Frame = 1
Query: 1 RDGRVLVAYGGSK----------VNTGHKRQXXXXXXXXXDDEEPFVKFLMLNPSVHFDEIVQKARAVILVGGTMQPTGDLVRQLFPSVEPSRVDVFSCGHVIP 282
RDGRVL +GG + V R D+EEP VKFLMLNP+VHFDEIVQKARA++LVGGTMQPTGDLVRQLF SVEPSRV+VFSCGHVIP
Sbjct: 714 RDGRVLATFGGKEGDGRSSSRGSVGGXXXRGATAGQKTTQDEEEPSVKFLMLNPAVHFDEIVQKARALVLVGGTMQPTGDLVRQLFSSVEPSRVEVFSCGHVIP 817
BLAST of mRNA_H-elongata_contig72708.14943.1 vs. uniprot
Match: A0A4D9CWW8_9STRA (Helicase ATP-binding domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CWW8_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 2.400e-18 Identity = 47/94 (50.00%), Postives = 59/94 (62.77%), Query Frame = 1
Query: 1 RDGRVLVAYGGSKVNTGHKRQXXXXXXXXXDDEEPFVKFLMLNPSVHFDEIVQKARAVILVGGTMQPTGDLVRQLFPSVEPSRVDVFSCGHVIP 282
RDGR+++ TGH Q +KF+MLN +VHF EIV +AR+V+LVGGTMQP +V QLFP + SR+DVFSCGHVIP
Sbjct: 581 RDGRIVL-------ETGHGPQKGRRQMAAG------IKFIMLNAAVHFREIVSEARSVVLVGGTMQPVAPIVAQLFPDLPISRLDVFSCGHVIP 661
BLAST of mRNA_H-elongata_contig72708.14943.1 vs. uniprot
Match: A0A5D6Y0V7_9STRA (Helicase ATP-binding domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y0V7_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 4.470e-18 Identity = 38/61 (62.30%), Postives = 49/61 (80.33%), Query Frame = 1
Query: 100 EPFVKFLMLNPSVHFDEIVQKARAVILVGGTMQPTGDLVRQLFPSVEPSRVDVFSCGHVIP 282
E +KF+ +NP+VHF+EIV KAR+VIL GGTMQP ++ QLFP V +R+D+FSCGHVIP
Sbjct: 600 EGAIKFIQMNPAVHFEEIVAKARSVILAGGTMQPVAQVIDQLFPFVPRARIDLFSCGHVIP 660
BLAST of mRNA_H-elongata_contig72708.14943.1 vs. uniprot
Match: A0A484DR37_BRELC (Helicase ATP-binding domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DR37_BRELC) HSP 1 Score: 85.9 bits (211), Expect = 1.550e-17 Identity = 39/91 (42.86%), Postives = 57/91 (62.64%), Query Frame = 1
Query: 10 RVLVAYGGSKVNTGHKRQXXXXXXXXXDDEEPFVKFLMLNPSVHFDEIVQKARAVILVGGTMQPTGDLVRQLFPSVEPSRVDVFSCGHVIP 282
R++ A+ + NTG + E ++F++LNP +HF EIV KAR++IL GGTMQP ++ +LF S+ +VD+FSCGHVIP
Sbjct: 526 RIVEAFLKALTNTGGDGRIFVQPHNASKGAEGLIRFILLNPVIHFQEIVAKARSIILAGGTMQPVSQVIDELFSSIPIEKVDLFSCGHVIP 616
BLAST of mRNA_H-elongata_contig72708.14943.1 vs. uniprot
Match: K3W6Y0_GLOUD (Helicase ATP-binding domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W6Y0_GLOUD) HSP 1 Score: 85.9 bits (211), Expect = 1.550e-17 Identity = 35/61 (57.38%), Postives = 49/61 (80.33%), Query Frame = 1
Query: 100 EPFVKFLMLNPSVHFDEIVQKARAVILVGGTMQPTGDLVRQLFPSVEPSRVDVFSCGHVIP 282
E +KF+++NP++HF+EIV+KAR+VIL GGTMQP ++ QLF + R+D+FSCGHVIP
Sbjct: 607 EGAIKFILMNPAIHFEEIVEKARSVILAGGTMQPVSQVIDQLFSKIPRDRIDLFSCGHVIP 667
BLAST of mRNA_H-elongata_contig72708.14943.1 vs. uniprot
Match: A0A662X2D8_9STRA (Helicase ATP-binding domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X2D8_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 2.120e-17 Identity = 36/58 (62.07%), Postives = 47/58 (81.03%), Query Frame = 1
Query: 109 VKFLMLNPSVHFDEIVQKARAVILVGGTMQPTGDLVRQLFPSVEPSRVDVFSCGHVIP 282
+KF++LNP++HF E+V+KAR+VIL GGTMQP ++ QLF SV VD+FSCGHVIP
Sbjct: 600 IKFILLNPAIHFQEVVEKARSVILAGGTMQPVSQVIDQLFASVPREHVDLFSCGHVIP 657
BLAST of mRNA_H-elongata_contig72708.14943.1 vs. uniprot
Match: A0A397THS0_9GLOM (ATP-dependent DNA helicase CHL1 n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397THS0_9GLOM) HSP 1 Score: 85.1 bits (209), Expect = 2.890e-17 Identity = 42/93 (45.16%), Postives = 58/93 (62.37%), Query Frame = 1
Query: 4 DGRVLVAYGGSKVNTGHKRQXXXXXXXXXDDEEPFVKFLMLNPSVHFDEIVQKARAVILVGGTMQPTGDLVRQLFPSVEPSRVDVFSCGHVIP 282
DGRV++ + V+ KR+ P+ K+L+LNPS F +IV+ AR+VIL GGTM+PT DL+ QLFP + R+ FSCGH+IP
Sbjct: 554 DGRVILGFQQIAVSVEGKREVTTTNYI------PYFKYLLLNPSNQFKDIVEDARSVILAGGTMEPTDDLIEQLFPYLPSQRLSKFSCGHIIP 640
BLAST of mRNA_H-elongata_contig72708.14943.1 vs. uniprot
Match: A0A015KHZ2_RHIIW (ATP-dependent DNA helicase CHL1 n=11 Tax=Rhizophagus TaxID=1129544 RepID=A0A015KHZ2_RHIIW) HSP 1 Score: 84.3 bits (207), Expect = 5.380e-17 Identity = 42/93 (45.16%), Postives = 57/93 (61.29%), Query Frame = 1
Query: 4 DGRVLVAYGGSKVNTGHKRQXXXXXXXXXDDEEPFVKFLMLNPSVHFDEIVQKARAVILVGGTMQPTGDLVRQLFPSVEPSRVDVFSCGHVIP 282
DGRV++ + V+ KR P +K+L+LNPS F +IV+ AR+VIL GGTM+PT DL+ QL P + P R+ FSCGH+IP
Sbjct: 533 DGRVILGFQQISVSVEGKRGGTTTKYV------PIIKYLLLNPSNQFKDIVEDARSVILAGGTMEPTDDLIGQLIPYLPPQRLSKFSCGHIIP 619
BLAST of mRNA_H-elongata_contig72708.14943.1 vs. uniprot
Match: A0A329SYA8_9STRA (Putative ATP-dependent DNA helicase n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SYA8_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 7.340e-17 Identity = 36/61 (59.02%), Postives = 47/61 (77.05%), Query Frame = 1
Query: 100 EPFVKFLMLNPSVHFDEIVQKARAVILVGGTMQPTGDLVRQLFPSVEPSRVDVFSCGHVIP 282
E ++F++LNP +HF EIV+K+R+VIL GGTMQP ++ QLF SV VD+FSCGHVIP
Sbjct: 552 EGLIRFILLNPVIHFQEIVEKSRSVILAGGTMQPVSQVIDQLFSSVPKENVDLFSCGHVIP 612
BLAST of mRNA_H-elongata_contig72708.14943.1 vs. uniprot
Match: D0MZY5_PHYIT (ATP-dependent RNA helicase, putative n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MZY5_PHYIT) HSP 1 Score: 83.2 bits (204), Expect = 1.360e-16 Identity = 34/61 (55.74%), Postives = 47/61 (77.05%), Query Frame = 1
Query: 100 EPFVKFLMLNPSVHFDEIVQKARAVILVGGTMQPTGDLVRQLFPSVEPSRVDVFSCGHVIP 282
E ++F++LNP++HF EIV K+R+VIL GGTMQP ++ QLF S+ +D+FSCGHVIP
Sbjct: 515 EGLIRFILLNPAIHFQEIVNKSRSVILAGGTMQPVSQVIDQLFSSIPREHIDLFSCGHVIP 575 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72708.14943.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig72708.14943.1 >prot_H-elongata_contig72708.14943.1 ID=prot_H-elongata_contig72708.14943.1|Name=mRNA_H-elongata_contig72708.14943.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp RDGRVLVAYGGSKVNTGHKRQQQQQRQQQLDDEEPFVKFLMLNPSVHFDEback to top mRNA from alignment at H-elongata_contig72708:1077..2048+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig72708.14943.1 ID=mRNA_H-elongata_contig72708.14943.1|Name=mRNA_H-elongata_contig72708.14943.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=972bp|location=Sequence derived from alignment at H-elongata_contig72708:1077..2048+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig72708:1077..2048+ >mRNA_H-elongata_contig72708.14943.1 ID=mRNA_H-elongata_contig72708.14943.1|Name=mRNA_H-elongata_contig72708.14943.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig72708:1077..2048+ (Himanthalia elongata Himel1 dioecious)back to top |