mRNA_H-elongata_contig72691.14942.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig72691.14942.1
Unique NamemRNA_H-elongata_contig72691.14942.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig72691.14942.1 vs. uniprot
Match: D7FPC3_ECTSI (C2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPC3_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 3.480e-49
Identity = 98/176 (55.68%), Postives = 120/176 (68.18%), Query Frame = 1 
Query:    1 SQGASLLYDSLIYPIIVKHLVPIGS--KKNPGAAFAAAGAEAVSTASKAVSSGFSA--------AQGISARGLSAVTVPIVGDLLTPDQTELRVVVVSASDIVPTEAPGATADCDPYCVLEVLPEGSRPKDGAAESTKYKTVCKTGTANPVWNEGVTIPNVKSLDAKLVVTVCNKR 498
            ++GA+ LYD +I P++++H++P  S  K+ P +A                              A+ + + G  AVTVP     ++PD +ELRVVVVSASD+VPTEAPGA  DCDPYCVLEVLPEG+R K GAAE+TKYKTVCKTGTANPVWNEGVTIP V+ LDAKLVVTVCNKR
Sbjct:  137 TRGATHLYDVVIRPLVIQHVLPGSSQAKRAPPSAXXXXXXXXXXXXXXXXXXXXXXXSSPVPEFAERVMSTGAPAVTVP--AGFVSPDLSELRVVVVSASDVVPTEAPGAGVDCDPYCVLEVLPEGTRLKQGAAENTKYKTVCKTGTANPVWNEGVTIPQVEHLDAKLVVTVCNKR 310
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72691.14942.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FPC3_ECTSI3.480e-4955.68C2 domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72691contigH-elongata_contig72691:1597..3139 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score172.6
Seed ortholog evalue1.6e-40
Seed eggNOG ortholog2880.D7FPC3
KEGG koko:K17279
EggNOG free text desc.endoplasmic reticulum tubular network membrane organization
EggNOG OGsCOG5052@1,KOG1725@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04147
Hectar predicted targeting categoryother localisation
Exons3
Model size498
Cds size498
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72691.14942.1prot_H-elongata_contig72691.14942.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig72691 1597..3139 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931128.947996-CDS-H-elongata_contig72691:1596..18451622931128.947996-CDS-H-elongata_contig72691:1596..1845Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72691 1597..1845 +
1691679709.8931584-CDS-H-elongata_contig72691:1596..18451691679709.8931584-CDS-H-elongata_contig72691:1596..1845Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72691 1597..1845 +
1622931128.9624126-CDS-H-elongata_contig72691:2304..24571622931128.9624126-CDS-H-elongata_contig72691:2304..2457Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72691 2305..2457 +
1691679709.9068651-CDS-H-elongata_contig72691:2304..24571691679709.9068651-CDS-H-elongata_contig72691:2304..2457Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72691 2305..2457 +
1622931128.9743395-CDS-H-elongata_contig72691:3043..31391622931128.9743395-CDS-H-elongata_contig72691:3043..3139Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72691 3044..3139 +
1691679709.9186847-CDS-H-elongata_contig72691:3043..31391691679709.9186847-CDS-H-elongata_contig72691:3043..3139Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72691 3044..3139 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig72691.14942.1

>prot_H-elongata_contig72691.14942.1 ID=prot_H-elongata_contig72691.14942.1|Name=mRNA_H-elongata_contig72691.14942.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=166bp
SQGASLLYDSLIYPIIVKHLVPIGSKKNPGAAFAAAGAEAVSTASKAVSS
GFSAAQGISARGLSAVTVPIVGDLLTPDQTELRVVVVSASDIVPTEAPGA
TADCDPYCVLEVLPEGSRPKDGAAESTKYKTVCKTGTANPVWNEGVTIPN
VKSLDAKLVVTVCNKR
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mRNA from alignment at H-elongata_contig72691:1597..3139+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig72691.14942.1 ID=mRNA_H-elongata_contig72691.14942.1|Name=mRNA_H-elongata_contig72691.14942.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1543bp|location=Sequence derived from alignment at H-elongata_contig72691:1597..3139+ (Himanthalia elongata Himel1 dioecious)
TCCCAGGGAGCGTCATTGTTGTACGACTCATTGATCTACCCTATCATCGT
GAAGCATCTCGTGCCAATTGGCTCCAAGAAGAATCCTGGAGCTGCTTTTG
CTGCCGCAGGGGCAGAGGCGGTGTCCACCGCGTCGAAGGCGGTATCGTCA
GGATTTTCCGCAGCGCAGGGGATCTCGGCAAGAGGCCTGTCTGCGGTAAC
GGTCCCGATCGTCGGGGACCTGCTGACCCCCGACCAGACGGAGCTGAGGG
TGAGGCAGGTTTTTCTTGCGGGAAAGAGGCGTTTGTCTGGGGGTGTTTGC
TCTCAAGGAAGGGAATTGGGAGGGGGGCAGCGCAGCCACAGCGAGGCCGA
TACGGGCAATGTCTCCCTTTTTTGTCATTTTCATAAAAACACTAGACATG
TGCGTGTATTTATGAAATTGCACATGACTGCGCAATCCGGCCCTGTCATG
CTATTAACCCCTATGGAACTTGATCTGTTTTTTCTATACTAAATTCAATA
TAAAACTTGAAAATAAGTTCCGAAAGGGTTAATATCTAGGCTACGTGCAT
TTATATTAAAAAACCTTAAACTCATTCGAACCCTCCGAACATCCACTTTT
AACTGAGAACAAAAATGAGCTAGTGTAAAATTTTTACACGCACAGGTAAG
CCAGAGCCAGAGGATATCCTTGTCACCACCGTTGAAAAATTAATTTCGTG
TGTTGAAGGTGGTCGTGGTGTCCGCAAGCGACATTGTCCCGACGGAAGCT
CCGGGGGCCACGGCGGACTGCGACCCCTACTGCGTACTGGAGGTGCTGCC
GGAGGGATCTCGGCCGAAAGACGGGGCAGCGGAAAGCACCAAGTACAAGA
CCGTGTGCAAGGTAGAGAGAGGGGAGGGAGGGGAAGGGCGAAATCCGATG
CCATCACATGTCATACAAAAATCCTCACGCGTGTGTGGGTGGTCTTGGCC
TCACGCGTGTGTGGGTGGTCTTGGCCTCACGAGAATGAGGGTGGTGATGG
CCACTCGCGGAACGAAATGTGGAGTGCAATTCGTAAACGCCTCGGTAGGG
TTTCCTATTTTGTGTTTTGAGAGGAGTGGATCTTGATTTTGATTCGTGTT
CCGTTTTTTTAGTATCTCGTCTTACGTTTCTTCCTCTGTATCATAGGGGT
TTTCTAGAGAGGCCAGGAAAGACGCCTCACCCCTTCTTCACGTAGCTTTC
TTGGTGAAATATTTAAGGTTTGTTGAAGATTTTACAGAGTTCAAGAGAAT
GAAAAAATGCGTCAATGGTGTCGAGTGAGAAGGGAGGTTTGGGACGCAGG
AGTTGTTTTCGTGCACCATCTCTCCCGAAGCACCCAGCACTATTGGATGT
CACTTCTCTGGTTGTCCCCAGCCTCCCCCCCCCACCCCCCCTCTGTCCCT
TGATGCCAACACACCTCCCCGAAACCCGCGTGTAATTGGATGCGAAGACG
GGAACGGCGAACCCCGTGTGGAACGAGGGGGTCACCATCCCCAACGTGAA
AAGCCTGGACGCGAAGCTCGTCGTTACCGTCTGCAACAAGCGC
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Coding sequence (CDS) from alignment at H-elongata_contig72691:1597..3139+

>mRNA_H-elongata_contig72691.14942.1 ID=mRNA_H-elongata_contig72691.14942.1|Name=mRNA_H-elongata_contig72691.14942.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=996bp|location=Sequence derived from alignment at H-elongata_contig72691:1597..3139+ (Himanthalia elongata Himel1 dioecious)
TCCCAGGGAGCGTCATTGTTGTACGACTCATTGATCTACCCTATCATCGT
GAAGCATCTCGTGCCAATTGGCTCCAAGAAGAATCCTGGAGCTGCTTTTG
CTGCCGCAGGGGCAGAGGCGGTGTCCACCGCGTCGAAGGCGGTATCGTCA
GGATTTTCCGCAGCGCAGGGGATCTCGGCAAGAGGCCTGTCTGCGGTAAC
GGTCCCGATCGTCGGGGACCTGCTGACCCCCGACCAGACGGAGCTGAGGT
CCCAGGGAGCGTCATTGTTGTACGACTCATTGATCTACCCTATCATCGTG
AAGCATCTCGTGCCAATTGGCTCCAAGAAGAATCCTGGAGCTGCTTTTGC
TGCCGCAGGGGCAGAGGCGGTGTCCACCGCGTCGAAGGCGGTATCGTCAG
GATTTTCCGCAGCGCAGGGGATCTCGGCAAGAGGCCTGTCTGCGGTAACG
GTCCCGATCGTCGGGGACCTGCTGACCCCCGACCAGACGGAGCTGAGGGT
GGTCGTGGTGTCCGCAAGCGACATTGTCCCGACGGAAGCTCCGGGGGCCA
CGGCGGACTGCGACCCCTACTGCGTACTGGAGGTGCTGCCGGAGGGATCT
CGGCCGAAAGACGGGGCAGCGGAAAGCACCAAGTACAAGACCGTGTGCAA
GGTGGTCGTGGTGTCCGCAAGCGACATTGTCCCGACGGAAGCTCCGGGGG
CCACGGCGGACTGCGACCCCTACTGCGTACTGGAGGTGCTGCCGGAGGGA
TCTCGGCCGAAAGACGGGGCAGCGGAAAGCACCAAGTACAAGACCGTGTG
CAAGACGGGAACGGCGAACCCCGTGTGGAACGAGGGGGTCACCATCCCCA
ACGTGAAAAGCCTGGACGCGAAGCTCGTCGTTACCGTCTGCAACAAGCGC
ACGGGAACGGCGAACCCCGTGTGGAACGAGGGGGTCACCATCCCCAACGT
GAAAAGCCTGGACGCGAAGCTCGTCGTTACCGTCTGCAACAAGCGC
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