mRNA_H-elongata_contig72689.14940.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig72689.14940.1
Unique NamemRNA_H-elongata_contig72689.14940.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig72689.14940.1 vs. uniprot
Match: A0A6H5JAP6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAP6_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 3.760e-15
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1 
Query:    1 MSRLQETSVLEGHTERVWCVAWSPDGKLLASCSSDK 108
            MSRL+ET+ LEGHTERVWCVAWSPDG+LLASCSSDK
Sbjct:    1 MSRLRETAALEGHTERVWCVAWSPDGRLLASCSSDK 36
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BLAST of mRNA_H-elongata_contig72689.14940.1 vs. uniprot
Match: D7FXR6_ECTSI (Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR6_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 6.530e-15
Identity = 32/36 (88.89%), Postives = 35/36 (97.22%), Query Frame = 1 
Query:    1 MSRLQETSVLEGHTERVWCVAWSPDGKLLASCSSDK 108
            MSRL+ET+ LEGHTERVWCVAWSPDG+LLASCSSDK
Sbjct:    1 MSRLRETAALEGHTERVWCVAWSPDGRLLASCSSDK 36
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BLAST of mRNA_H-elongata_contig72689.14940.1 vs. uniprot
Match: A0A5J4YI89_9CHLO (Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4YI89_9CHLO)

HSP 1 Score: 60.1 bits (144), Expect = 1.410e-9
Identity = 25/36 (69.44%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    1 MSRLQETSVLEGHTERVWCVAWSPDGKLLASCSSDK 108
            M+RL++T VLEGHT+RVW VAWSP G  +ASCS DK
Sbjct:    1 MARLEQTQVLEGHTDRVWNVAWSPKGDSIASCSGDK 36
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BLAST of mRNA_H-elongata_contig72689.14940.1 vs. uniprot
Match: A0A835YYV2_9STRA (Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYV2_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.520e-9
Identity = 26/36 (72.22%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 MSRLQETSVLEGHTERVWCVAWSPDGKLLASCSSDK 108
            M++L   + LEGH ER W VAWSPDGKLLASCSSDK
Sbjct:    1 MAKLSLLATLEGHEERAWFVAWSPDGKLLASCSSDK 36
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BLAST of mRNA_H-elongata_contig72689.14940.1 vs. uniprot
Match: V3ZFT4_LOTGI (Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog n=1 Tax=Lottia gigantea TaxID=225164 RepID=V3ZFT4_LOTGI)

HSP 1 Score: 58.2 bits (139), Expect = 7.210e-9
Identity = 24/36 (66.67%), Postives = 26/36 (72.22%), Query Frame = 1 
Query:    1 MSRLQETSVLEGHTERVWCVAWSPDGKLLASCSSDK 108
            M RL+E +   GH E VWCVAWSP G LLASCS DK
Sbjct:    1 MFRLEEITTFTGHNEAVWCVAWSPSGSLLASCSGDK 36
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BLAST of mRNA_H-elongata_contig72689.14940.1 vs. uniprot
Match: A0A0B7APJ6_9EUPU (Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B7APJ6_9EUPU)

HSP 1 Score: 58.2 bits (139), Expect = 7.240e-9
Identity = 23/36 (63.89%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:    1 MSRLQETSVLEGHTERVWCVAWSPDGKLLASCSSDK 108
            M  L+E   L GHT+RVWCV+WSP+G LLASC  DK
Sbjct:    1 MQTLKEYQTLNGHTDRVWCVSWSPNGSLLASCGGDK 36
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BLAST of mRNA_H-elongata_contig72689.14940.1 vs. uniprot
Match: A0A2V0PR28_9CHLO (Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PR28_9CHLO)

HSP 1 Score: 58.2 bits (139), Expect = 7.540e-9
Identity = 24/33 (72.73%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:   10 LQETSVLEGHTERVWCVAWSPDGKLLASCSSDK 108
            L+    LEGH ERVWCVAWSPDG  LASCS+DK
Sbjct:    9 LELLQTLEGHDERVWCVAWSPDGSTLASCSADK 41
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BLAST of mRNA_H-elongata_contig72689.14940.1 vs. uniprot
Match: A0A699ZUP8_HAELA (Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699ZUP8_HAELA)

HSP 1 Score: 57.8 bits (138), Expect = 8.070e-9
Identity = 24/33 (72.73%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:   10 LQETSVLEGHTERVWCVAWSPDGKLLASCSSDK 108
            +QE  VLEGHT+RVW VAWSP G+ LASCS DK
Sbjct:    1 MQELQVLEGHTDRVWAVAWSPSGENLASCSGDK 33
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BLAST of mRNA_H-elongata_contig72689.14940.1 vs. uniprot
Match: J9ESC0_9SPIT (Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9ESC0_9SPIT)

HSP 1 Score: 57.8 bits (138), Expect = 1.030e-8
Identity = 22/33 (66.67%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:   10 LQETSVLEGHTERVWCVAWSPDGKLLASCSSDK 108
            LQE S LE H +R+WC+AW+P G L+ASCSSDK
Sbjct:  731 LQELSTLEAHDDRIWCLAWNPQGSLIASCSSDK 763
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BLAST of mRNA_H-elongata_contig72689.14940.1 vs. uniprot
Match: A0A6P7SB17_OCTVU (Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog n=2 Tax=Octopus TaxID=6643 RepID=A0A6P7SB17_OCTVU)

HSP 1 Score: 57.0 bits (136), Expect = 1.870e-8
Identity = 23/33 (69.70%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:   10 LQETSVLEGHTERVWCVAWSPDGKLLASCSSDK 108
            +QET+ L GH E+VWCVAW PDG+LLAS  SDK
Sbjct:    5 MQETTSLSGHEEQVWCVAWDPDGRLLASSGSDK 37
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72689.14940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAP6_9PHAE3.760e-1588.89Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FXR6_ECTSI6.530e-1588.89Probable cytosolic iron-sulfur protein assembly pr... [more]
A0A5J4YI89_9CHLO1.410e-969.44Probable cytosolic iron-sulfur protein assembly pr... [more]
A0A835YYV2_9STRA1.520e-972.22Probable cytosolic iron-sulfur protein assembly pr... [more]
V3ZFT4_LOTGI7.210e-966.67Probable cytosolic iron-sulfur protein assembly pr... [more]
A0A0B7APJ6_9EUPU7.240e-963.89Probable cytosolic iron-sulfur protein assembly pr... [more]
A0A2V0PR28_9CHLO7.540e-972.73Probable cytosolic iron-sulfur protein assembly pr... [more]
A0A699ZUP8_HAELA8.070e-972.73Probable cytosolic iron-sulfur protein assembly pr... [more]
J9ESC0_9SPIT1.030e-866.67Probable cytosolic iron-sulfur protein assembly pr... [more]
A0A6P7SB17_OCTVU1.870e-869.70Probable cytosolic iron-sulfur protein assembly pr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72689contigH-elongata_contig72689:2743..2850 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.3
Seed ortholog evalue1.3e-11
Seed eggNOG ortholog2880.D7FXR6
Preferred nameCIA1
GOsGO:0000166,GO:0002097,GO:0002098,GO:0003674,GO:0003700,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0006139,GO:0006355,GO:0006357,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006790,GO:0006807,GO:0008033,GO:0008144,GO:0008150,GO:0008152,GO:0008284,GO:0009451,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0015630,GO:0016043,GO:0016070,GO:0016226,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0019538,GO:0022607,GO:0030554,GO:0031163,GO:0031323,GO:0031326,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0042127,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044572,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051186,GO:0051252,GO:0051604,GO:0060255,GO:0065007,GO:0071704,GO:0071817,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097361,GO:0097367,GO:0097428,GO:0106035,GO:0140110,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.iron-sulfur cluster assembly
EggNOG OGsKOG0645@1,KOG0645@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size108
Cds size108
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931128.7050648-CDS-H-elongata_contig72689:2742..28501622931128.7050648-CDS-H-elongata_contig72689:2742..2850Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72689 2743..2850 +
1691679709.7316203-CDS-H-elongata_contig72689:2742..28501691679709.7316203-CDS-H-elongata_contig72689:2742..2850Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72689 2743..2850 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72689.14940.1prot_H-elongata_contig72689.14940.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig72689 2743..2850 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig72689.14940.1

>prot_H-elongata_contig72689.14940.1 ID=prot_H-elongata_contig72689.14940.1|Name=mRNA_H-elongata_contig72689.14940.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=36bp
MSRLQETSVLEGHTERVWCVAWSPDGKLLASCSSDK
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mRNA from alignment at H-elongata_contig72689:2743..2850+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig72689.14940.1 ID=mRNA_H-elongata_contig72689.14940.1|Name=mRNA_H-elongata_contig72689.14940.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=108bp|location=Sequence derived from alignment at H-elongata_contig72689:2743..2850+ (Himanthalia elongata Himel1 dioecious)
ATGTCGCGACTTCAAGAGACATCCGTTCTGGAGGGTCACACGGAGCGCGT
GTGGTGCGTGGCATGGTCGCCGGACGGCAAGCTTCTGGCGTCCTGCAGCA
GCGATAAG
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Coding sequence (CDS) from alignment at H-elongata_contig72689:2743..2850+

>mRNA_H-elongata_contig72689.14940.1 ID=mRNA_H-elongata_contig72689.14940.1|Name=mRNA_H-elongata_contig72689.14940.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=216bp|location=Sequence derived from alignment at H-elongata_contig72689:2743..2850+ (Himanthalia elongata Himel1 dioecious)
ATGTCGCGACTTCAAGAGACATCCGTTCTGGAGGGTCACACGGAGCGCGT
GTGGTGCGTGGCATGGTCGCCGGACGGCAAGCTTCTGGCGTCCTGCAGCA
GCGATAAGATGTCGCGACTTCAAGAGACATCCGTTCTGGAGGGTCACACG
GAGCGCGTGTGGTGCGTGGCATGGTCGCCGGACGGCAAGCTTCTGGCGTC
CTGCAGCAGCGATAAG
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