mRNA_H-elongata_contig72655.14935.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig72655.14935.1
Unique NamemRNA_H-elongata_contig72655.14935.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig72655.14935.1 vs. uniprot
Match: D7G1F5_ECTSI (Amino acid/polyamine transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1F5_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 6.180e-26
Identity = 51/62 (82.26%), Postives = 58/62 (93.55%), Query Frame = 1 
Query:    1 QVVGATGSTTITFILPGLLYLKVHPDPHPKRSLAALQLAVGVLIIPVALTFIALGDSAERRR 186
            +VVGATGSTT+ F+LPGLLYLK+HP+PHPKRSLA LQLAVG+LIIPVALTFIALG SAE +R
Sbjct:  679 EVVGATGSTTVAFVLPGLLYLKLHPEPHPKRSLATLQLAVGLLIIPVALTFIALGHSAEGQR 740
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BLAST of mRNA_H-elongata_contig72655.14935.1 vs. uniprot
Match: A0A7S2WEX7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WEX7_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.040e-12
Identity = 32/56 (57.14%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:    4 VVGATGSTTITFILPGLLYLKVHPDPHPKRSLAALQLAVGVLIIPVALTFIALGDS 171
            +VGATGSTT+++ILPG+ Y K+ P+PH KR LA  QL  G+ I+P ALT IA+ +S
Sbjct:  343 IVGATGSTTVSYILPGICYFKMFPEPHLKRWLALGQLCAGLFIMPAALTLIAIENS 398
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BLAST of mRNA_H-elongata_contig72655.14935.1 vs. uniprot
Match: A0A7S2BAD5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BAD5_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.730e-12
Identity = 29/51 (56.86%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:    4 VVGATGSTTITFILPGLLYLKVHPDPHPKRSLAALQLAVGVLIIPVALTFI 156
            +VGATGST ++++LPGL Y ++ P+PH KR+LA +Q  +G +IIP+ALTFI
Sbjct:  204 IVGATGSTMVSYVLPGLCYFRLFPEPHIKRNLALVQFGLGCVIIPLALTFI 254
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BLAST of mRNA_H-elongata_contig72655.14935.1 vs. uniprot
Match: A0A7S1FBP7_NOCSC (Hypothetical protein (Fragment) n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1FBP7_NOCSC)

HSP 1 Score: 65.1 bits (157), Expect = 4.110e-11
Identity = 30/43 (69.77%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    4 VVGATGSTTITFILPGLLYLKVHPDPHPKRSLAALQLAVGVLI 132
            VVGATGSTT+T+ILPGLLY++ H  PH KRSLA LQL+ G +I
Sbjct:  201 VVGATGSTTVTYILPGLLYMRSHKRPHLKRSLAMLQLSAGCII 243
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BLAST of mRNA_H-elongata_contig72655.14935.1 vs. uniprot
Match: A0A7S0ZVR7_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S0ZVR7_NOCSC)

HSP 1 Score: 64.3 bits (155), Expect = 1.650e-10
Identity = 30/49 (61.22%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    4 VVGATGSTTITFILPGLLYLKVHPDPHPKRSLAALQLAVGVLIIPVALT 150
            +VGATGSTT+T+ILPGLLYL+ H   H KR  A LQL  G +I+P+ LT
Sbjct:  393 IVGATGSTTVTYILPGLLYLRSHRHSHWKRRFAMLQLFAGCIIMPLCLT 441
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BLAST of mRNA_H-elongata_contig72655.14935.1 vs. uniprot
Match: A0A7S1TS32_9STRA (Hypothetical protein n=3 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TS32_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 4.250e-10
Identity = 28/53 (52.83%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    4 VVGATGSTTITFILPGLLYLKVHPDPHPKRSLAALQLAVGVLIIPVALTFIAL 162
            +VGA GSTT++F+LPG +Y ++HP PH KR  AA    +G +I+P+AL FI L
Sbjct:  466 IVGAVGSTTVSFLLPGAVYFRLHPWPHWKRYGAAFVFCIGCIIMPLALVFIFL 518
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BLAST of mRNA_H-elongata_contig72655.14935.1 vs. uniprot
Match: A0A835YKE8_9STRA (Transmembrane amino acid transporter protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKE8_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 5.130e-9
Identity = 32/64 (50.00%), Postives = 41/64 (64.06%), Query Frame = 1 
Query:    1 QVVGATGSTTITFILPGLLYLKVHPDP---HPKRSLAALQLAVGVLIIPVALTFIALGDSAERR 183
            +VVGATGST I++ILPG +YL +HP      P R  AA+QLA G +I+PV L F+  G     R
Sbjct:  364 EVVGATGSTIISYILPGGIYLALHPPTDKVQPLRVAAAVQLATGCVIMPVCLFFVIEGAVTSYR 427
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BLAST of mRNA_H-elongata_contig72655.14935.1 vs. uniprot
Match: A0A7S1WY18_ALECA (Hypothetical protein n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1WY18_ALECA)

HSP 1 Score: 59.7 bits (143), Expect = 7.080e-9
Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:    4 VVGATGSTTITFILPGLLYLKVHPDPHPKRSLAALQLAVGVLIIPVALTFIAL 162
            VVGATGSTT+++ILPGL+Y    PD   KR LA +QL +G +I+P  L  I L
Sbjct:  464 VVGATGSTTVSYILPGLMYATAFPDGGIKRKLAFVQLGLGCIIMPTCLILIFL 516
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BLAST of mRNA_H-elongata_contig72655.14935.1 vs. uniprot
Match: A0A8J5XBN8_DIALT (Aa_trans domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XBN8_DIALT)

HSP 1 Score: 58.9 bits (141), Expect = 1.330e-8
Identity = 30/58 (51.72%), Postives = 36/58 (62.07%), Query Frame = 1 
Query:    4 VVGATGSTTITFILPGLLYLKVHPDPHPKRSLAALQLAVGVLIIPVALTFIAL--GDS 171
            VVGATGST +++ILPG +Y  +HP PH  R  A    A GV I PV+L  I    GDS
Sbjct:  510 VVGATGSTAVSYILPGAIYWVLHPHPHAMRFAAGAMFAAGVCITPVSLAAILTSHGDS 567
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BLAST of mRNA_H-elongata_contig72655.14935.1 vs. uniprot
Match: A0A8J5X8H2_DIALT (Aa_trans domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X8H2_DIALT)

HSP 1 Score: 58.5 bits (140), Expect = 1.810e-8
Identity = 26/48 (54.17%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:    4 VVGATGSTTITFILPGLLYLKVHPDPHPKRSLAALQLAVGVLIIPVAL 147
            VVGATGSTT+++ILPG  Y ++HP PH KR +A      G+ +IP AL
Sbjct:  418 VVGATGSTTVSYILPGACYWRLHPFPHAKRYVAGGMFLTGLALIPTAL 465
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72655.14935.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1F5_ECTSI6.180e-2682.26Amino acid/polyamine transporter n=2 Tax=Ectocarpu... [more]
A0A7S2WEX7_9STRA1.040e-1257.14Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2BAD5_9STRA1.730e-1256.86Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S1FBP7_NOCSC4.110e-1169.77Hypothetical protein (Fragment) n=1 Tax=Noctiluca ... [more]
A0A7S0ZVR7_NOCSC1.650e-1061.22Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A7S1TS32_9STRA4.250e-1052.83Hypothetical protein n=3 Tax=Phaeomonas parva TaxI... [more]
A0A835YKE8_9STRA5.130e-950.00Transmembrane amino acid transporter protein-domai... [more]
A0A7S1WY18_ALECA7.080e-954.72Hypothetical protein n=1 Tax=Alexandrium catenella... [more]
A0A8J5XBN8_DIALT1.330e-851.72Aa_trans domain-containing protein n=1 Tax=Diacron... [more]
A0A8J5X8H2_DIALT1.810e-854.17Aa_trans domain-containing protein n=2 Tax=Diacron... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72655contigH-elongata_contig72655:2654..2842 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.4
Seed ortholog evalue6.3e-22
Seed eggNOG ortholog2880.D7G1F5
Preferred nameAVT7
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003333,GO:0003674,GO:0005215,GO:0005290,GO:0005302,GO:0005310,GO:0005313,GO:0005326,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006835,GO:0006836,GO:0006855,GO:0006865,GO:0006950,GO:0006995,GO:0007034,GO:0007154,GO:0008150,GO:0008324,GO:0008509,GO:0008514,GO:0009267,GO:0009605,GO:0009987,GO:0009991,GO:0015075,GO:0015171,GO:0015172,GO:0015173,GO:0015174,GO:0015175,GO:0015179,GO:0015181,GO:0015183,GO:0015189,GO:0015194,GO:0015238,GO:0015318,GO:0015556,GO:0015711,GO:0015740,GO:0015800,GO:0015801,GO:0015802,GO:0015804,GO:0015807,GO:0015809,GO:0015813,GO:0015817,GO:0015819,GO:0015825,GO:0015828,GO:0015849,GO:0015893,GO:0016020,GO:0016021,GO:0022857,GO:0022889,GO:0031090,GO:0031166,GO:0031224,GO:0031300,GO:0031301,GO:0031310,GO:0031667,GO:0031668,GO:0031669,GO:0032329,GO:0032974,GO:0032975,GO:0033554,GO:0034220,GO:0034486,GO:0034490,GO:0034491,GO:0042221,GO:0042493,GO:0042594,GO:0043090,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043562,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045117,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0051938,GO:0055085,GO:0061459,GO:0070778,GO:0071496,GO:0071627,GO:0071628,GO:0071702,GO:0071705,GO:0071944,GO:0089709,GO:0090454,GO:0090513,GO:0090514,GO:0090515,GO:0090516,GO:0090517,GO:0090518,GO:0098588,GO:0098655,GO:0098656,GO:0098805,GO:0098852,GO:1901474,GO:1901481,GO:1901482,GO:1902022,GO:1902023,GO:1902024,GO:1902475,GO:1903400,GO:1903401,GO:1903825,GO:1903826,GO:1905039,GO:1990822
EggNOG free text desc.amino acid
EggNOG OGsCOG0814@1,KOG1305@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons1
Model size189
Cds size189
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931128.3669083-CDS-H-elongata_contig72655:2653..28421622931128.3669083-CDS-H-elongata_contig72655:2653..2842Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72655 2654..2842 -
1691679709.5355616-CDS-H-elongata_contig72655:2653..28421691679709.5355616-CDS-H-elongata_contig72655:2653..2842Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72655 2654..2842 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72655.14935.1prot_H-elongata_contig72655.14935.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig72655 2654..2842 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig72655.14935.1

>prot_H-elongata_contig72655.14935.1 ID=prot_H-elongata_contig72655.14935.1|Name=mRNA_H-elongata_contig72655.14935.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
QVVGATGSTTITFILPGLLYLKVHPDPHPKRSLAALQLAVGVLIIPVALT
FIALGDSAERRR*
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mRNA from alignment at H-elongata_contig72655:2654..2842-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig72655.14935.1 ID=mRNA_H-elongata_contig72655.14935.1|Name=mRNA_H-elongata_contig72655.14935.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=189bp|location=Sequence derived from alignment at H-elongata_contig72655:2654..2842- (Himanthalia elongata Himel1 dioecious)
CAGGTGGTGGGCGCGACGGGATCGACGACGATCACGTTCATACTTCCGGG
GCTCCTGTACCTCAAGGTGCACCCGGACCCTCACCCCAAACGTAGCCTAG
CGGCACTGCAGCTAGCGGTTGGGGTCCTGATCATCCCCGTCGCGCTGACC
TTCATCGCCCTCGGGGACTCGGCAGAGAGAAGGAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig72655:2654..2842-

>mRNA_H-elongata_contig72655.14935.1 ID=mRNA_H-elongata_contig72655.14935.1|Name=mRNA_H-elongata_contig72655.14935.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig72655:2654..2842- (Himanthalia elongata Himel1 dioecious)
CAGGTGGTGGGCGCGACGGGATCGACGACGATCACGTTCATACTTCCGGG
GCTCCTGTACCTCAAGGTGCACCCGGACCCTCACCCCAAACGTAGCCTAG
CGGCACTGCAGCTAGCGGTTGGGGTCCTGATCATCCCCGTCGCGCTGACC
TTCATCGCCCTCGGGGACTCGGCAGAGAGAAGGAGGTGACAGGTGGTGGG
CGCGACGGGATCGACGACGATCACGTTCATACTTCCGGGGCTCCTGTACC
TCAAGGTGCACCCGGACCCTCACCCCAAACGTAGCCTAGCGGCACTGCAG
CTAGCGGTTGGGGTCCTGATCATCCCCGTCGCGCTGACCTTCATCGCCCT
CGGGGACTCGGCAGAGAGAAGGAGGTGA
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