mRNA_H-elongata_contig72635.14932.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig72635.14932.1 vs. uniprot
Match: A0A6H5KWY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWY7_9PHAE) HSP 1 Score: 270 bits (689), Expect = 3.360e-81 Identity = 121/140 (86.43%), Postives = 134/140 (95.71%), Query Frame = 1
Query: 1 LQASVERLTQQRKGGSVVTASARDFNDWKRKNGVSSETKVFIITGWYPCVKKALIDRGWTQNPDRDSPFFDLKWTLHSQDMRTTEIQPWQLCNHFFKNVAITTKAGLLGNLRNLKWFADCDCAEVFPRGYDLSVETDVQA 420
LQASVERLTQQRKGG V+TASARDFNDWKRK+ V+ ETKVF++TGWYPCVKKALI+RGWTQN DRDSPFFDLKWTLHSQD+RTT+I+PWQLCNHFFKNVAITTKAGLLGNLRNLKWFADCDC+E+ PRGYDLS++TDV A
Sbjct: 486 LQASVERLTQQRKGGGVITASARDFNDWKRKHKVAPETKVFVMTGWYPCVKKALIERGWTQNHDRDSPFFDLKWTLHSQDIRTTDIEPWQLCNHFFKNVAITTKAGLLGNLRNLKWFADCDCSEILPRGYDLSIDTDVLA 625
BLAST of mRNA_H-elongata_contig72635.14932.1 vs. uniprot
Match: D8LPR6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPR6_ECTSI) HSP 1 Score: 267 bits (683), Expect = 2.480e-80 Identity = 119/138 (86.23%), Postives = 132/138 (95.65%), Query Frame = 1
Query: 1 LQASVERLTQQRKGGSVVTASARDFNDWKRKNGVSSETKVFIITGWYPCVKKALIDRGWTQNPDRDSPFFDLKWTLHSQDMRTTEIQPWQLCNHFFKNVAITTKAGLLGNLRNLKWFADCDCAEVFPRGYDLSVETDV 414
LQ SVERLTQQRKGG V+TASARDFNDWKRK+ V+ ETKVF++TGWYPCVKKALI+RGWTQN DRDSPFFDLKWTLHSQD+RTT+I+PWQLCNHFFKNVAITTKAGLLGNLRNLKWFADCDC+E+ PRGYDLS++TDV
Sbjct: 645 LQTSVERLTQQRKGGGVITASARDFNDWKRKHKVAPETKVFVMTGWYPCVKKALIERGWTQNHDRDSPFFDLKWTLHSQDIRTTDIEPWQLCNHFFKNVAITTKAGLLGNLRNLKWFADCDCSEILPRGYDLSIDTDV 782
BLAST of mRNA_H-elongata_contig72635.14932.1 vs. uniprot
Match: A0A836CCI3_9STRA (Tubulin-tyrosine ligase family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCI3_9STRA) HSP 1 Score: 171 bits (434), Expect = 8.040e-48 Identity = 74/119 (62.18%), Postives = 90/119 (75.63%), Query Frame = 1
Query: 64 ARDFNDWKRKNGVSSETKVFIITGWYPCVKKALIDRGWTQNPDRDSPFFDLKWTLHSQDMRTTEIQPWQLCNHFFKNVAITTKAGLLGNLRNLKWFADCDCAEVFPRGYDLSVETDVQA 420
ARDFNDWKR+NG+ S+ KVFI+TGW+PCVK AL RGW NPDR SPFFDL+W LHS D +QPWQL NHF ++V +TTKAGLL +R+L+W + D VFPR Y+LSV+TD A
Sbjct: 8 ARDFNDWKRRNGLRSDAKVFIMTGWFPCVKNALQQRGWHNNPDRTSPFFDLRWALHSSDRSAAALQPWQLSNHFVRSVGLTTKAGLLDTMRSLRWHVNADGDSVFPRCYNLSVDTDALA 126
BLAST of mRNA_H-elongata_contig72635.14932.1 vs. uniprot
Match: A0A7S4DGA6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DGA6_HETAK) HSP 1 Score: 159 bits (403), Expect = 3.060e-46 Identity = 75/138 (54.35%), Postives = 93/138 (67.39%), Query Frame = 1
Query: 7 ASVERLTQQRKGGSVVTASARDFNDWKRKNGVSSETKVFIITGWYPCVKKALIDRGWTQNPDRDSPFFDLKWTLHSQDMRTTEIQPWQLCNHFFKNVAITTKAGLLGNLRNLKWFADCDCAEVFPRGYDLSVETDVQA 420
A VERLT +++ V RD+ DW+ KNG+ +VF +TGWYPCVK AL++RGW N DR+S FFDLKWTL S D++ ++P QL NHF KN+AITTK GLL NLR L F D ++FPR YDLS E D A
Sbjct: 29 AMVERLTSKKEKAPPVDEGYRDYADWRSKNGLEEGQRVFCMTGWYPCVKDALLERGWFFNADRESRFFDLKWTLRSSDVKKENLEPRQLTNHFLKNIAITTKVGLLRNLRGLSNFVPVDPDDIFPRAYDLSQELDFHA 166
BLAST of mRNA_H-elongata_contig72635.14932.1 vs. uniprot
Match: A0A7S2QUJ6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QUJ6_9STRA) HSP 1 Score: 166 bits (420), Expect = 6.290e-45 Identity = 79/126 (62.70%), Postives = 96/126 (76.19%), Query Frame = 1
Query: 19 RLTQQRKGGSVVTASARDFNDWKRKNGVSSETKVFIITGWYPCVKKALIDRGWTQNPDRDSPFFDLKWTLHSQDMRTTEIQPWQLCNHFFKNVAITTKAGLLGNLRNLKWFADCDCAEVFPRGYDL 396
RL+Q++KG + V ARDFNDWKRKNGVS++ KVF +TGWYPCVK+ L++RGW N DR+SPFFDLKWTL S D++ IQ QL NHF KN AITTK G++ +LRNL WFA +FPRGYDL
Sbjct: 478 RLSQRKKGDAKVV-EARDFNDWKRKNGVSADQKVFAMTGWYPCVKEDLLERGWFFNEDRESPFFDLKWTLRSTDVKNN-IQAHQLTNHFLKNTAITTKVGIMKSLRNLTWFASETEDAIFPRGYDL 601
BLAST of mRNA_H-elongata_contig72635.14932.1 vs. uniprot
Match: A0A7S2SIQ5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SIQ5_9STRA) HSP 1 Score: 163 bits (413), Expect = 7.720e-45 Identity = 76/137 (55.47%), Postives = 98/137 (71.53%), Query Frame = 1
Query: 10 SVERLTQQRKGGSV-VTASARDFNDWKRKNGVSSETKVFIITGWYPCVKKALIDRGWTQNPDRDSPFFDLKWTLHSQDMRTTEIQPWQLCNHFFKNVAITTKAGLLGNLRNLKWFADCDCAEVFPRGYDLSVETDVQ 417
SV RL +K +T +ARDFNDWK+KN V + KVF +TGWYPCVK+AL++RGW N DR+S FFDLKWTL S +++ ++QPWQL NHF KN AITTK GLL +LR+L W A+ ++PR YDL+ D+Q
Sbjct: 406 SVARLYSTKKQADEGLTPAARDFNDWKKKNAVPPDGKVFSMTGWYPCVKEALLERGWHFNSDRESFFFDLKWTLKSTELKQEQLQPWQLTNHFLKNAAITTKVGLLRSLRDLPWHAEVHPHSIYPRSYDLNSPLDLQ 542
BLAST of mRNA_H-elongata_contig72635.14932.1 vs. uniprot
Match: A0A7S2CZK0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CZK0_9STRA) HSP 1 Score: 153 bits (386), Expect = 8.490e-44 Identity = 67/129 (51.94%), Postives = 90/129 (69.77%), Query Frame = 1
Query: 13 VERLTQQRKGGSVVTASARDFNDWKRKNGVSSETKVFIITGWYPCVKKALIDRGWTQNPDRDSPFFDLKWTLHSQDMRTTEIQPWQLCNHFFKNVAITTKAGLLGNLRNLKWFADCDCAEVFPRGYDLS 399
+E+L ++ ARDFN WKRKN V KVF +TGWYPC+K+AL+ RGW QN +++S FFDLKWTL S ++ +++ PWQL NHF KN AITTK G+L +LR+L W ++ +FPRGYDL+
Sbjct: 57 IEKLGTKKATNPEGELEARDFNHWKRKNLVPEGAKVFCMTGWYPCIKEALLGRGWHQNTEKESFFFDLKWTLRSTELNQSQLLPWQLTNHFLKNTAITTKVGILRSLRSLTWHSNAHSDVIFPRGYDLN 185
BLAST of mRNA_H-elongata_contig72635.14932.1 vs. uniprot
Match: A0A7S2D0C9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D0C9_9STRA) HSP 1 Score: 155 bits (393), Expect = 1.340e-43 Identity = 72/131 (54.96%), Postives = 90/131 (68.70%), Query Frame = 1
Query: 10 SVERLTQQRKGGSV-VTASARDFNDWKRKNGVSSETKVFIITGWYPCVKKALIDRGWTQNPDRDSPFFDLKWTLHSQDMRTTEIQPWQLCNHFFKNVAITTKAGLLGNLRNLKWFADCDCAEVFPRGYDLS 399
S RL ++K + ARDF DWKRKN V KVF +TGWYPCVK+AL++RGW NPDRDS FFDLKWTL S +++ ++ PWQL NHF KN AITTK GLL +L++L W + +FPR YDL+
Sbjct: 75 STNRLYARKKASQEGLEPEARDFADWKRKNNVPESAKVFSLTGWYPCVKEALLERGWHFNPDRDSFFFDLKWTLRSNELKQNDLAPWQLTNHFLKNTAITTKVGLLRSLKHLPWHTNEHPDAIFPRCYDLN 205
BLAST of mRNA_H-elongata_contig72635.14932.1 vs. uniprot
Match: A0A7S1XST1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XST1_9STRA) HSP 1 Score: 158 bits (400), Expect = 1.820e-43 Identity = 74/134 (55.22%), Postives = 96/134 (71.64%), Query Frame = 1
Query: 16 ERLTQQRKGGSVVTASARDFNDWKRKNGVSSETKVFIITGWYPCVKKALIDRGWTQNPDRDSPFFDLKWTLHSQDMRTTEIQPWQLCNHFFKNVAITTKAGLLGNLRNLKWFADCDCAEVFPRGYDLSVETDVQ 417
ERLT+ +K + ARD+ DWKR+N V + VF +TGWYPCVK+AL RGW N DR+SP+FDLKWTL+SQ+++ +E++ QL NHF KN AITTKAGLL +LR L WFAD FPR YDLS+ +++
Sbjct: 112 ERLTEAKK--KEEHSQARDYADWKRRNDVPQDAPVFCLTGWYPCVKEALEARGWHFNADRESPYFDLKWTLYSQELKASELEEGQLTNHFMKNTAITTKAGLLKSLRLLPWFADAHADAFFPRSYDLSLPEELR 243
BLAST of mRNA_H-elongata_contig72635.14932.1 vs. uniprot
Match: W4FJN3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FJN3_9STRA) HSP 1 Score: 159 bits (401), Expect = 2.230e-42 Identity = 70/140 (50.00%), Postives = 98/140 (70.00%), Query Frame = 1
Query: 1 LQASVERLTQQRKGGSVVTASARDFNDWKRKNGVSSETKVFIITGWYPCVKKALIDRGWTQNPDRDSPFFDLKWTLHSQDMRTTEIQPWQLCNHFFKNVAITTKAGLLGNLRNLKWFADCDCAEVFPRGYDLSVETDVQA 420
++A V RL++ + + + A+DF WK++NGV+ +TKVF +TGWYP +K+ L RGW NPDR+SP+FDLKW L S D+++ ++ QL NHF +N AITTK+GLL NLRN+ WF D FPR YDL+ TD+Q+
Sbjct: 342 VEAMVSRLSKLKTSEAQLVPEAKDFTSWKKRNGVALDTKVFCLTGWYPVIKETLEKRGWHHNPDRNSPYFDLKWALKSDDLKSVKLNDDQLVNHFLQNTAITTKSGLLHNLRNVTWFLSEDIDSFFPRAYDLNEPTDMQS 481 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72635.14932.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig72635.14932.1 >prot_H-elongata_contig72635.14932.1 ID=prot_H-elongata_contig72635.14932.1|Name=mRNA_H-elongata_contig72635.14932.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=140bp LQASVERLTQQRKGGSVVTASARDFNDWKRKNGVSSETKVFIITGWYPCVback to top mRNA from alignment at H-elongata_contig72635:1005..1961- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig72635.14932.1 ID=mRNA_H-elongata_contig72635.14932.1|Name=mRNA_H-elongata_contig72635.14932.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=957bp|location=Sequence derived from alignment at H-elongata_contig72635:1005..1961- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig72635:1005..1961- >mRNA_H-elongata_contig72635.14932.1 ID=mRNA_H-elongata_contig72635.14932.1|Name=mRNA_H-elongata_contig72635.14932.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=840bp|location=Sequence derived from alignment at H-elongata_contig72635:1005..1961- (Himanthalia elongata Himel1 dioecious)back to top |