mRNA_H-elongata_contig7263.14931.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7263.14931.1
Unique NamemRNA_H-elongata_contig7263.14931.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig7263.14931.1 vs. uniprot
Match: D7G8F1_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8F1_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 1.520e-9
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:    1 LGISATTLKRLCRHYGIKRWPYRQIAGIDRTVQRL 105
            +GIS TTLK+LCR+YGI RWPYRQIAG  R V RL
Sbjct:   50 IGISPTTLKKLCRYYGISRWPYRQIAGKTRAVDRL 84
[Close]
BLAST of mRNA_H-elongata_contig7263.14931.1 vs. uniprot
Match: D8LEC2_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEC2_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 4.710e-8
Identity = 23/35 (65.71%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:    1 LGISATTLKRLCRHYGIKRWPYRQIAGIDRTVQRL 105
            + IS TTLKRLCR +G+KRWP+RQI GI+RT+  L
Sbjct:  126 MDISVTTLKRLCRRHGVKRWPHRQICGINRTLNDL 160
[Close]
BLAST of mRNA_H-elongata_contig7263.14931.1 vs. uniprot
Match: A0A6H5K716_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K716_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 4.710e-8
Identity = 23/35 (65.71%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:    1 LGISATTLKRLCRHYGIKRWPYRQIAGIDRTVQRL 105
            + IS TTLKRLCR +G+KRWP+RQI GI+RT+  L
Sbjct:  138 MDISVTTLKRLCRRHGVKRWPHRQICGINRTLNDL 172
[Close]
BLAST of mRNA_H-elongata_contig7263.14931.1 vs. uniprot
Match: A0A6H5JLN8_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN8_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 8.720e-8
Identity = 22/35 (62.86%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:    1 LGISATTLKRLCRHYGIKRWPYRQIAGIDRTVQRL 105
            + IS TTLKRLCR +G+KRWP+RQI+GI+R +  L
Sbjct: 1041 MNISVTTLKRLCRRHGVKRWPHRQISGINRAMAHL 1075
[Close]
BLAST of mRNA_H-elongata_contig7263.14931.1 vs. uniprot
Match: D8LNV2_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNV2_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 8.750e-8
Identity = 22/35 (62.86%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:    1 LGISATTLKRLCRHYGIKRWPYRQIAGIDRTVQRL 105
            + IS TTLKRLCR +G+KRWP+RQI+GI+R +  L
Sbjct:  815 MNISVTTLKRLCRRHGVKRWPHRQISGINRAMAHL 849
[Close]
BLAST of mRNA_H-elongata_contig7263.14931.1 vs. uniprot
Match: D7FN15_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN15_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 1.310e-7
Identity = 21/32 (65.62%), Postives = 29/32 (90.62%), Query Frame = 1 
Query:    1 LGISATTLKRLCRHYGIKRWPYRQIAGIDRTV 96
            + IS TTLKRLCR +G+KRWP+RQI+G++RT+
Sbjct:   88 MHISVTTLKRLCRRHGVKRWPHRQISGLNRTL 119
[Close]
BLAST of mRNA_H-elongata_contig7263.14931.1 vs. uniprot
Match: D8LCC6_ECTSI (Riboflavin kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCC6_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 1.650e-7
Identity = 21/33 (63.64%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:    7 ISATTLKRLCRHYGIKRWPYRQIAGIDRTVQRL 105
            IS T+LKRLCR +G+KRWP+RQ++G++RTV  L
Sbjct:   44 ISVTSLKRLCRRHGVKRWPHRQLSGLNRTVSHL 76
[Close]
BLAST of mRNA_H-elongata_contig7263.14931.1 vs. uniprot
Match: A0A6H5L9C1_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9C1_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 1.650e-7
Identity = 21/33 (63.64%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:    7 ISATTLKRLCRHYGIKRWPYRQIAGIDRTVQRL 105
            IS T+LKRLCR +G+KRWP+RQ++G++RTV  L
Sbjct:   76 ISVTSLKRLCRRHGVKRWPHRQLSGLNRTVSHL 108
[Close]
BLAST of mRNA_H-elongata_contig7263.14931.1 vs. uniprot
Match: A0A6H5K0H9_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0H9_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 3.070e-7
Identity = 19/33 (57.58%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:    1 LGISATTLKRLCRHYGIKRWPYRQIAGIDRTVQ 99
            +G+S T +KRLCR YGIKRWPYRQI  ++++++
Sbjct:  128 MGVSTTIIKRLCRKYGIKRWPYRQIRSVNKSIK 160
[Close]
BLAST of mRNA_H-elongata_contig7263.14931.1 vs. uniprot
Match: D8LJT6_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJT6_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 3.080e-7
Identity = 19/33 (57.58%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:    1 LGISATTLKRLCRHYGIKRWPYRQIAGIDRTVQ 99
            +G+S T +KRLCR YGIKRWPYRQI  ++++++
Sbjct:  126 MGVSTTIIKRLCRKYGIKRWPYRQIRSVNKSIK 158
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7263.14931.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8F1_ECTSI1.520e-974.29Putative NIN-like transcription factor n=1 Tax=Ect... [more]
D8LEC2_ECTSI4.710e-865.71Putative NIN-like transcription factor n=1 Tax=Ect... [more]
A0A6H5K716_9PHAE4.710e-865.71RWP-RK domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5JLN8_9PHAE8.720e-862.86RWP-RK domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LNV2_ECTSI8.750e-862.86Putative NIN-like transcription factor n=1 Tax=Ect... [more]
D7FN15_ECTSI1.310e-765.63Putative NIN-like transcription factor n=1 Tax=Ect... [more]
D8LCC6_ECTSI1.650e-763.64Riboflavin kinase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5L9C1_9PHAE1.650e-763.64RWP-RK domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5K0H9_9PHAE3.070e-757.58RWP-RK domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LJT6_ECTSI3.080e-757.58Putative NIN-like transcription factor n=1 Tax=Ect... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7263contigH-elongata_contig7263:9888..9992 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size105
Cds size105
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931128.0165865-CDS-H-elongata_contig7263:9887..99921622931128.0165865-CDS-H-elongata_contig7263:9887..9992Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7263 9888..9992 +
1691679709.4180782-CDS-H-elongata_contig7263:9887..99921691679709.4180782-CDS-H-elongata_contig7263:9887..9992Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7263 9888..9992 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7263.14931.1prot_H-elongata_contig7263.14931.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7263 9888..9992 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7263.14931.1

>prot_H-elongata_contig7263.14931.1 ID=prot_H-elongata_contig7263.14931.1|Name=mRNA_H-elongata_contig7263.14931.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=35bp
LGISATTLKRLCRHYGIKRWPYRQIAGIDRTVQRL
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mRNA from alignment at H-elongata_contig7263:9888..9992+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7263.14931.1 ID=mRNA_H-elongata_contig7263.14931.1|Name=mRNA_H-elongata_contig7263.14931.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=105bp|location=Sequence derived from alignment at H-elongata_contig7263:9888..9992+ (Himanthalia elongata Himel1 dioecious)
CTGGGGATATCAGCCACTACTCTAAAGAGACTCTGTCGACACTATGGCAT
AAAACGATGGCCATACCGACAAATTGCGGGCATCGACCGCACCGTCCAAC
GTCTT
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Coding sequence (CDS) from alignment at H-elongata_contig7263:9888..9992+

>mRNA_H-elongata_contig7263.14931.1 ID=mRNA_H-elongata_contig7263.14931.1|Name=mRNA_H-elongata_contig7263.14931.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=210bp|location=Sequence derived from alignment at H-elongata_contig7263:9888..9992+ (Himanthalia elongata Himel1 dioecious)
CTGGGGATATCAGCCACTACTCTAAAGAGACTCTGTCGACACTATGGCAT
AAAACGATGGCCATACCGACAAATTGCGGGCATCGACCGCACCGTCCAAC
GTCTTCTGGGGATATCAGCCACTACTCTAAAGAGACTCTGTCGACACTAT
GGCATAAAACGATGGCCATACCGACAAATTGCGGGCATCGACCGCACCGT
CCAACGTCTT
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