mRNA_H-elongata_contig72603.14929.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig72603.14929.1
Unique NamemRNA_H-elongata_contig72603.14929.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig72603.14929.1 vs. uniprot
Match: A0A6H5K4L5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4L5_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 1.030e-40
Identity = 63/81 (77.78%), Postives = 72/81 (88.89%), Query Frame = 1
Query:   34 TGLRRRNLALGIVVCGFGVVMASVPFIARKRMTKSLYDSEEGLTGSQIQRGAFMNSGSKDVGRDDDWDKDTREWKGRRNKP 276
            + +R+RNLA+G+ +CGF   MAS+PF+ RKRMTKSLYDSEEGLTGSQIQRGAFMNSGSKDVGRD DW K+TREW GRRNKP
Sbjct:    6 SSVRQRNLAVGVAICGFSAAMASLPFVVRKRMTKSLYDSEEGLTGSQIQRGAFMNSGSKDVGRDHDWSKETREWAGRRNKP 86          
BLAST of mRNA_H-elongata_contig72603.14929.1 vs. uniprot
Match: W7UAH4_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UAH4_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.690e-13
Identity = 41/85 (48.24%), Postives = 56/85 (65.88%), Query Frame = 1
Query:   28 APTGLRRRNLALGIVVCGFGVVMASV-PFIARK-RMTKSLYDSEEGLTGSQIQRGAFMNSGSKDVGRDDDWDKDTREWKGRRNKP 276
            A    R RN  + +V+   G+ MA++ P+  RK R  +SLY S++ LTGSQI RGA+MNS S+D+G D D+D  + EW GRRN P
Sbjct:   18 ATLSTRNRN-RITVVLVTLGITMAALLPYGIRKLRDGRSLYQSDKPLTGSQIMRGAYMNSSSQDIGPDPDYDFRSGEWHGRRNDP 101          
BLAST of mRNA_H-elongata_contig72603.14929.1 vs. uniprot
Match: A0A7S1XNK1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XNK1_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.640e-13
Identity = 39/76 (51.32%), Postives = 53/76 (69.74%), Query Frame = 1
Query:   22 MKAPTGLRRRNLALGIVVCGFGVVMASVPFIARKRMTKSLYDSEEGLTGSQIQRGAFMNSGSKDVGRDDDWDKDTR 249
            M+ P     RN A  +V+ G   VMA+VPF++ K  T++L + ++ LTG+Q+QRG FMNSGSKDVGRD +W KD R
Sbjct:   37 MRRPDPRAARNTATLVVLLGGCAVMAAVPFLSMKT-TENLMNRDKALTGTQVQRGPFMNSGSKDVGRDPNW-KDGR 110          
BLAST of mRNA_H-elongata_contig72603.14929.1 vs. uniprot
Match: A0A1V9YCV8_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YCV8_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 3.600e-12
Identity = 34/77 (44.16%), Postives = 50/77 (64.94%), Query Frame = 1
Query:   40 LRRRNLALGIVVCGFGVVMASVPF-IARKRMTKSLYDSEEGLTGSQIQRGAFMNSGSKDVGRDDDWDKDTREWKGRR 267
            + R  LA+G+ V   G++  S+PF I + +  ++    E  L+ SQI+RG +MN+GSKD+GRD DWD  T  +KGRR
Sbjct:    1 MARNKLAVGLAVGAGGLLSFSLPFWIVQSKKDQNTMSMEGPLSTSQIRRGVYMNTGSKDIGRDPDWDLTTNTYKGRR 77          
BLAST of mRNA_H-elongata_contig72603.14929.1 vs. uniprot
Match: K3XCC5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XCC5_GLOUD)

HSP 1 Score: 64.7 bits (156), Expect = 5.690e-11
Identity = 32/69 (46.38%), Postives = 44/69 (63.77%), Query Frame = 1
Query:   73 VCGFGVVMA----SVPFIARKRMTKSLYDSEEGLTGSQIQRGAFMNSGSKDVGRDDDWDKDTREWKGRR 267
            V GF +V+     S+PF+A    T++L   E+ L  SQI+RG ++N+GSKD G D DWD  T  W+GRR
Sbjct:   21 VVGFALVIGTAFFSIPFLAHFTKTENLTRKEDALNASQIRRGVYLNTGSKDAGVDPDWDFRTNTWRGRR 89          
BLAST of mRNA_H-elongata_contig72603.14929.1 vs. uniprot
Match: A0A067C630_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C630_SAPPC)

HSP 1 Score: 62.0 bits (149), Expect = 3.840e-10
Identity = 31/70 (44.29%), Postives = 47/70 (67.14%), Query Frame = 1
Query:   61 LGIVVCGFGVVMASVPF-IARKRMTKSLYDSEEGLTGSQIQRGAFMNSGSKDVGRDDDWDKDTREWKGRR 267
            +G++V   G++  S+PF I + +  ++    E  L+ SQI+RG +MN+GSKD+GRD DWD  T  +KGRR
Sbjct:   12 VGLLVGAGGLLSFSMPFLIVQSKKDQNTMSMEGPLSTSQIRRGVYMNTGSKDIGRDPDWDLTTNSYKGRR 81          
BLAST of mRNA_H-elongata_contig72603.14929.1 vs. uniprot
Match: A0A2R5GU17_9STRA (Protein N-lysine methyltransferase METTL21A n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GU17_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 6.100e-10
Identity = 34/77 (44.16%), Postives = 48/77 (62.34%), Query Frame = 1
Query:   46 RRNLALGIVVCGFGVVMASVPFIARKRMTKS---LYDSEEGLTGSQIQRGAFMNSGSKDVGRDDDWDKDTREWKGRR 267
            RRNLA    + GF  + ASVP     ++ ++   L   E  LTG+Q+ RGA++N+GS+D G D DWD + R W+GRR
Sbjct:    4 RRNLATAAGLVGFIGLCASVPMWYSNKLKQAQVNLQQQENALTGNQVIRGAYLNTGSRDAGVDPDWDFERRVWRGRR 80          
BLAST of mRNA_H-elongata_contig72603.14929.1 vs. uniprot
Match: A0A3M6VDP6_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VDP6_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 9.360e-10
Identity = 33/69 (47.83%), Postives = 43/69 (62.32%), Query Frame = 1
Query:   73 VCGFGVVMA----SVPFIARKRMTKSLYDSEEGLTGSQIQRGAFMNSGSKDVGRDDDWDKDTREWKGRR 267
            V GF VV+A    S+PFIA      +L   ++ L  SQI+RGA+ NSGS+D G D DWD  T  ++GRR
Sbjct:    9 VVGFAVVVAAGFFSIPFIAHYTKGANLTAQKDPLNASQIRRGAYANSGSRDAGADPDWDLSTGTYRGRR 77          
BLAST of mRNA_H-elongata_contig72603.14929.1 vs. uniprot
Match: A0A5A8E2E3_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E2E3_CAFRO)

HSP 1 Score: 61.6 bits (148), Expect = 1.070e-9
Identity = 36/76 (47.37%), Postives = 45/76 (59.21%), Query Frame = 1
Query:   46 RRNLALGIVVCGFGVVM-----ASVPFIARKRMTKSLYDSEEGLTGSQIQRGAFMNSGSKDVGRDDDWDKDTREWK 258
            R +   G  V   G ++     AS+PF+  K   + L D E  LTG+QIQRGAF+NSGSKDVG D DWD  T  +K
Sbjct:    4 RSSKRAGKTVAAVGALLVAGGFASIPFLFTKSQVR-LTDKEGSLTGTQIQRGAFLNSGSKDVGVDPDWDLKTGTYK 78          
BLAST of mRNA_H-elongata_contig72603.14929.1 vs. uniprot
Match: A0A662Y583_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y583_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.140e-9
Identity = 32/69 (46.38%), Postives = 41/69 (59.42%), Query Frame = 1
Query:   73 VCGFGVVMA----SVPFIARKRMTKSLYDSEEGLTGSQIQRGAFMNSGSKDVGRDDDWDKDTREWKGRR 267
            V  F VV+     S+PFIA     ++    E+ L  SQI+RGA++NSGS+D G D DWD  T  W GRR
Sbjct:   11 VVAFAVVLGAAFFSIPFIAHYTKQENFTSKEQPLNASQIRRGAYLNSGSRDAGVDPDWDFRTGTWHGRR 79          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72603.14929.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K4L5_9PHAE1.030e-4077.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7UAH4_9STRA1.690e-1348.24Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S1XNK1_9STRA2.640e-1351.32Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A1V9YCV8_9STRA3.600e-1244.16Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
K3XCC5_GLOUD5.690e-1146.38Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A067C630_SAPPC3.840e-1044.29Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A2R5GU17_9STRA6.100e-1044.16Protein N-lysine methyltransferase METTL21A n=1 Ta... [more]
A0A3M6VDP6_9STRA9.360e-1047.83Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A5A8E2E3_CAFRO1.070e-947.37Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A662Y583_9STRA1.140e-946.38Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72603contigH-elongata_contig72603:1318..2249 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.7
Seed ortholog evalue2.4e-08
Seed eggNOG ortholog65071.PYU1_T014874
EggNOG free text desc.function. Source PGD
EggNOG OGs1MI0N@121069,2E2XB@1,2SA3B@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-04_001530.1
Exons2
Model size372
Cds size258
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72603.14929.1prot_H-elongata_contig72603.14929.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig72603 1339..2156 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931127.8804886-UTR-H-elongata_contig72603:1317..13381622931127.8804886-UTR-H-elongata_contig72603:1317..1338Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig72603 1318..1338 +
1691679709.3708875-UTR-H-elongata_contig72603:1317..13381691679709.3708875-UTR-H-elongata_contig72603:1317..1338Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig72603 1318..1338 +
1622931127.9298346-UTR-H-elongata_contig72603:2156..22491622931127.9298346-UTR-H-elongata_contig72603:2156..2249Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig72603 2157..2249 +
1691679709.3996964-UTR-H-elongata_contig72603:2156..22491691679709.3996964-UTR-H-elongata_contig72603:2156..2249Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig72603 2157..2249 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931127.8936553-CDS-H-elongata_contig72603:1338..14481622931127.8936553-CDS-H-elongata_contig72603:1338..1448Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72603 1339..1448 +
1691679709.3826606-CDS-H-elongata_contig72603:1338..14481691679709.3826606-CDS-H-elongata_contig72603:1338..1448Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72603 1339..1448 +
1622931127.9082086-CDS-H-elongata_contig72603:2008..21561622931127.9082086-CDS-H-elongata_contig72603:2008..2156Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72603 2009..2156 +
1691679709.391766-CDS-H-elongata_contig72603:2008..21561691679709.391766-CDS-H-elongata_contig72603:2008..2156Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72603 2009..2156 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig72603.14929.1

>prot_H-elongata_contig72603.14929.1 ID=prot_H-elongata_contig72603.14929.1|Name=mRNA_H-elongata_contig72603.14929.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
MKAPTGLRRRNLALGIVVCGFGVVMASVPFIARKRMTKSLYDSEEGLTGS
QIQRGAFMNSGSKDVGRDDDWDKDTREWKGRRNKP*
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mRNA from alignment at H-elongata_contig72603:1318..2249+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig72603.14929.1 ID=mRNA_H-elongata_contig72603.14929.1|Name=mRNA_H-elongata_contig72603.14929.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=932bp|location=Sequence derived from alignment at H-elongata_contig72603:1318..2249+ (Himanthalia elongata Himel1 dioecious)
CCTGATCGAGGCTAAACGATAATGAAAGCACCAACAGGTCTGCGGCGAAG AAACCTAGCCTTAGGAATCGTTGTTTGTGGCTTCGGTGTCGTGATGGCAT CGGTACCCTTCATCGCCCGCAAGAGGATGACGTAAGTCAAATTTGAAGTG CAGGGTCCTGAATCCTGAAGCCCTGTTTTGTTCTACCCTCTGCTTTGCAT CTTCAGAGACATCGCTTCTCGCGACACCGCCAACTAACTTCGAGGTCAAC TCCTTGCTTCTACAACACCGATATAAAATCTCCCACGAGCTATTGAACGT TCTACGTGCAAATATCTCGTGTTATGACTCGATGCGCCCTTGCCAACGCT TGCTCTAGCTACCACGACAGTATTTTTATTTTTTTTAACTTGAACTCATT CCAACCCTCCGAACATCCACACCCTCTTAGCGCCGTAAGAGGTGCCATCC TTCTCCACTTTGATACCAAAATGGACGGTCAACCTCATTTTACTATATAC AAGTCGTTCACAGCATGAAATTTAAACGCTCCGAACATCCAGGTGAAGTC CAACGAACCAACGATCGTCAGGTTCGAGTCTGACCTCATTTGATCACAAA TATCACAGTCCACATTCTGTCGAAGAGTCCCAAGTTCAACCACGGGTGAT AAAAGCGCCATTCCCGGTAATGTACTACCTCCTTCCAACAGGAAATCGCT GTACGACAGCGAGGAAGGGCTCACGGGTTCGCAGATACAGCGCGGCGCCT TCATGAACTCCGGGAGCAAAGACGTGGGGCGGGATGATGACTGGGACAAG GACACCCGGGAGTGGAAGGGACGTCGTAACAAGCCATAATACACTAGCTA CTAAAGGGTTTCCACGTGTTACAAACAATGCACGAAAAATATTCACTAAA GTGAACAGGAACCTAAACTAGTCCGCCACTGG
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Coding sequence (CDS) from alignment at H-elongata_contig72603:1318..2249+

>mRNA_H-elongata_contig72603.14929.1 ID=mRNA_H-elongata_contig72603.14929.1|Name=mRNA_H-elongata_contig72603.14929.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig72603:1318..2249+ (Himanthalia elongata Himel1 dioecious)
ATGAAAGCACCAACAGGTCTGCGGCGAAGAAACCTAGCCTTAGGAATCGT
TGTTTGTGGCTTCGGTGTCGTGATGGCATCGGTACCCTTCATCGCCCGCA
AGAGGATGACATGAAAGCACCAACAGGTCTGCGGCGAAGAAACCTAGCCT
TAGGAATCGTTGTTTGTGGCTTCGGTGTCGTGATGGCATCGGTACCCTTC
ATCGCCCGCAAGAGGATGACGAAATCGCTGTACGACAGCGAGGAAGGGCT
CACGGGTTCGCAGATACAGCGCGGCGCCTTCATGAACTCCGGGAGCAAAG
ACGTGGGGCGGGATGATGACTGGGACAAGGACACCCGGGAGTGGAAGGGA
CGTCGTAACAAGCCATAAGAAATCGCTGTACGACAGCGAGGAAGGGCTCA
CGGGTTCGCAGATACAGCGCGGCGCCTTCATGAACTCCGGGAGCAAAGAC
GTGGGGCGGGATGATGACTGGGACAAGGACACCCGGGAGTGGAAGGGACG
TCGTAACAAGCCATAA
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