mRNA_H-elongata_contig72603.14929.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig72603.14929.1 vs. uniprot
Match: A0A6H5K4L5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4L5_9PHAE) HSP 1 Score: 139 bits (350), Expect = 1.030e-40 Identity = 63/81 (77.78%), Postives = 72/81 (88.89%), Query Frame = 1
Query: 34 TGLRRRNLALGIVVCGFGVVMASVPFIARKRMTKSLYDSEEGLTGSQIQRGAFMNSGSKDVGRDDDWDKDTREWKGRRNKP 276
+ +R+RNLA+G+ +CGF MAS+PF+ RKRMTKSLYDSEEGLTGSQIQRGAFMNSGSKDVGRD DW K+TREW GRRNKP
Sbjct: 6 SSVRQRNLAVGVAICGFSAAMASLPFVVRKRMTKSLYDSEEGLTGSQIQRGAFMNSGSKDVGRDHDWSKETREWAGRRNKP 86
BLAST of mRNA_H-elongata_contig72603.14929.1 vs. uniprot
Match: W7UAH4_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UAH4_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 1.690e-13 Identity = 41/85 (48.24%), Postives = 56/85 (65.88%), Query Frame = 1
Query: 28 APTGLRRRNLALGIVVCGFGVVMASV-PFIARK-RMTKSLYDSEEGLTGSQIQRGAFMNSGSKDVGRDDDWDKDTREWKGRRNKP 276
A R RN + +V+ G+ MA++ P+ RK R +SLY S++ LTGSQI RGA+MNS S+D+G D D+D + EW GRRN P
Sbjct: 18 ATLSTRNRN-RITVVLVTLGITMAALLPYGIRKLRDGRSLYQSDKPLTGSQIMRGAYMNSSSQDIGPDPDYDFRSGEWHGRRNDP 101
BLAST of mRNA_H-elongata_contig72603.14929.1 vs. uniprot
Match: A0A7S1XNK1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XNK1_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 2.640e-13 Identity = 39/76 (51.32%), Postives = 53/76 (69.74%), Query Frame = 1
Query: 22 MKAPTGLRRRNLALGIVVCGFGVVMASVPFIARKRMTKSLYDSEEGLTGSQIQRGAFMNSGSKDVGRDDDWDKDTR 249
M+ P RN A +V+ G VMA+VPF++ K T++L + ++ LTG+Q+QRG FMNSGSKDVGRD +W KD R
Sbjct: 37 MRRPDPRAARNTATLVVLLGGCAVMAAVPFLSMKT-TENLMNRDKALTGTQVQRGPFMNSGSKDVGRDPNW-KDGR 110
BLAST of mRNA_H-elongata_contig72603.14929.1 vs. uniprot
Match: A0A1V9YCV8_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YCV8_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 3.600e-12 Identity = 34/77 (44.16%), Postives = 50/77 (64.94%), Query Frame = 1
Query: 40 LRRRNLALGIVVCGFGVVMASVPF-IARKRMTKSLYDSEEGLTGSQIQRGAFMNSGSKDVGRDDDWDKDTREWKGRR 267
+ R LA+G+ V G++ S+PF I + + ++ E L+ SQI+RG +MN+GSKD+GRD DWD T +KGRR
Sbjct: 1 MARNKLAVGLAVGAGGLLSFSLPFWIVQSKKDQNTMSMEGPLSTSQIRRGVYMNTGSKDIGRDPDWDLTTNTYKGRR 77
BLAST of mRNA_H-elongata_contig72603.14929.1 vs. uniprot
Match: K3XCC5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XCC5_GLOUD) HSP 1 Score: 64.7 bits (156), Expect = 5.690e-11 Identity = 32/69 (46.38%), Postives = 44/69 (63.77%), Query Frame = 1
Query: 73 VCGFGVVMA----SVPFIARKRMTKSLYDSEEGLTGSQIQRGAFMNSGSKDVGRDDDWDKDTREWKGRR 267
V GF +V+ S+PF+A T++L E+ L SQI+RG ++N+GSKD G D DWD T W+GRR
Sbjct: 21 VVGFALVIGTAFFSIPFLAHFTKTENLTRKEDALNASQIRRGVYLNTGSKDAGVDPDWDFRTNTWRGRR 89
BLAST of mRNA_H-elongata_contig72603.14929.1 vs. uniprot
Match: A0A067C630_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C630_SAPPC) HSP 1 Score: 62.0 bits (149), Expect = 3.840e-10 Identity = 31/70 (44.29%), Postives = 47/70 (67.14%), Query Frame = 1
Query: 61 LGIVVCGFGVVMASVPF-IARKRMTKSLYDSEEGLTGSQIQRGAFMNSGSKDVGRDDDWDKDTREWKGRR 267
+G++V G++ S+PF I + + ++ E L+ SQI+RG +MN+GSKD+GRD DWD T +KGRR
Sbjct: 12 VGLLVGAGGLLSFSMPFLIVQSKKDQNTMSMEGPLSTSQIRRGVYMNTGSKDIGRDPDWDLTTNSYKGRR 81
BLAST of mRNA_H-elongata_contig72603.14929.1 vs. uniprot
Match: A0A2R5GU17_9STRA (Protein N-lysine methyltransferase METTL21A n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GU17_9STRA) HSP 1 Score: 65.5 bits (158), Expect = 6.100e-10 Identity = 34/77 (44.16%), Postives = 48/77 (62.34%), Query Frame = 1
Query: 46 RRNLALGIVVCGFGVVMASVPFIARKRMTKS---LYDSEEGLTGSQIQRGAFMNSGSKDVGRDDDWDKDTREWKGRR 267
RRNLA + GF + ASVP ++ ++ L E LTG+Q+ RGA++N+GS+D G D DWD + R W+GRR
Sbjct: 4 RRNLATAAGLVGFIGLCASVPMWYSNKLKQAQVNLQQQENALTGNQVIRGAYLNTGSRDAGVDPDWDFERRVWRGRR 80
BLAST of mRNA_H-elongata_contig72603.14929.1 vs. uniprot
Match: A0A3M6VDP6_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VDP6_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 9.360e-10 Identity = 33/69 (47.83%), Postives = 43/69 (62.32%), Query Frame = 1
Query: 73 VCGFGVVMA----SVPFIARKRMTKSLYDSEEGLTGSQIQRGAFMNSGSKDVGRDDDWDKDTREWKGRR 267
V GF VV+A S+PFIA +L ++ L SQI+RGA+ NSGS+D G D DWD T ++GRR
Sbjct: 9 VVGFAVVVAAGFFSIPFIAHYTKGANLTAQKDPLNASQIRRGAYANSGSRDAGADPDWDLSTGTYRGRR 77
BLAST of mRNA_H-elongata_contig72603.14929.1 vs. uniprot
Match: A0A5A8E2E3_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E2E3_CAFRO) HSP 1 Score: 61.6 bits (148), Expect = 1.070e-9 Identity = 36/76 (47.37%), Postives = 45/76 (59.21%), Query Frame = 1
Query: 46 RRNLALGIVVCGFGVVM-----ASVPFIARKRMTKSLYDSEEGLTGSQIQRGAFMNSGSKDVGRDDDWDKDTREWK 258
R + G V G ++ AS+PF+ K + L D E LTG+QIQRGAF+NSGSKDVG D DWD T +K
Sbjct: 4 RSSKRAGKTVAAVGALLVAGGFASIPFLFTKSQVR-LTDKEGSLTGTQIQRGAFLNSGSKDVGVDPDWDLKTGTYK 78
BLAST of mRNA_H-elongata_contig72603.14929.1 vs. uniprot
Match: A0A662Y583_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y583_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 1.140e-9 Identity = 32/69 (46.38%), Postives = 41/69 (59.42%), Query Frame = 1
Query: 73 VCGFGVVMA----SVPFIARKRMTKSLYDSEEGLTGSQIQRGAFMNSGSKDVGRDDDWDKDTREWKGRR 267
V F VV+ S+PFIA ++ E+ L SQI+RGA++NSGS+D G D DWD T W GRR
Sbjct: 11 VVAFAVVLGAAFFSIPFIAHYTKQENFTSKEQPLNASQIRRGAYLNSGSRDAGVDPDWDFRTGTWHGRR 79 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72603.14929.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig72603.14929.1 >prot_H-elongata_contig72603.14929.1 ID=prot_H-elongata_contig72603.14929.1|Name=mRNA_H-elongata_contig72603.14929.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp MKAPTGLRRRNLALGIVVCGFGVVMASVPFIARKRMTKSLYDSEEGLTGSback to top mRNA from alignment at H-elongata_contig72603:1318..2249+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig72603.14929.1 ID=mRNA_H-elongata_contig72603.14929.1|Name=mRNA_H-elongata_contig72603.14929.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=932bp|location=Sequence derived from alignment at H-elongata_contig72603:1318..2249+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig72603:1318..2249+ >mRNA_H-elongata_contig72603.14929.1 ID=mRNA_H-elongata_contig72603.14929.1|Name=mRNA_H-elongata_contig72603.14929.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig72603:1318..2249+ (Himanthalia elongata Himel1 dioecious)back to top |