mRNA_H-elongata_contig72593.14928.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig72593.14928.1
Unique NamemRNA_H-elongata_contig72593.14928.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig72593.14928.1 vs. uniprot
Match: UPI00103FEA55 (uncharacterized protein LOC114361313 n=2 Tax=Ostrinia furnacalis TaxID=93504 RepID=UPI00103FEA55)

HSP 1 Score: 53.1 bits (126), Expect = 9.980e-6
Identity = 31/105 (29.52%), Postives = 53/105 (50.48%), Query Frame = 1 
Query:   37 EAWSKLVQHYRASGLKERRRLTVDFYTMKMDLGEHPREFLLQVDQMVKELERVERPVDSKDVDIVILSGLTPQYDAEVRMLESSSDWPTREWIERAVINQYERLE 351
            EAW+ L + Y   GL  R  L    +  K+        +L ++ ++  +L  +E P+D + V ++ILSGLT  YD  +  +E SS   + E I   ++ + +R E
Sbjct:   79 EAWTILQKTYEGRGLSRRLGLLRSLFNTKLSECSSMEVYLNKIKEISHQLSEIESPLDDELVAVIILSGLTDDYDPLIMAIEHSSSKLSTEVISTKLLQETQRRE 183
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BLAST of mRNA_H-elongata_contig72593.14928.1 vs. uniprot
Match: UPI001F8D56D1 (Uncharacterized protein n=1 Tax=Spodoptera exigua TaxID=7107 RepID=UPI001F8D56D1)

HSP 1 Score: 52.4 bits (124), Expect = 2.050e-5
Identity = 28/105 (26.67%), Postives = 53/105 (50.48%), Query Frame = 1 
Query:   37 EAWSKLVQHYRASGLKERRRLTVDFYTMKMDLGEHPREFLLQVDQMVKELERVERPVDSKDVDIVILSGLTPQYDAEVRMLESSSDWPTREWIERAVINQYERLE 351
            EAW+ L + Y   GL  +  L    +  K+        +L ++ ++  +L  +E P+D + + ++ILSGLT  YD  +  +E+S    T E +   ++ + +R E
Sbjct:   77 EAWNNLKKTYEGKGLCRKLGLLRSLFGTKLADSNSMDGYLNKIKEVAHQLSEIESPLDDEFIAVIILSGLTSDYDPLIMAIENSGQKLTTEHVSAKLLQETQRRE 181
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BLAST of mRNA_H-elongata_contig72593.14928.1 vs. uniprot
Match: A0A2H1WMK4_SPOFR (SFRICE_021333 n=1 Tax=Spodoptera frugiperda TaxID=7108 RepID=A0A2H1WMK4_SPOFR)

HSP 1 Score: 51.6 bits (122), Expect = 3.200e-5
Identity = 28/105 (26.67%), Postives = 53/105 (50.48%), Query Frame = 1 
Query:   37 EAWSKLVQHYRASGLKERRRLTVDFYTMKMDLGEHPREFLLQVDQMVKELERVERPVDSKDVDIVILSGLTPQYDAEVRMLESSSDWPTREWIERAVINQYERLE 351
            EAW  L + Y   GL  R  L    +  K+        +L ++ ++  +L  +E P+D + V +++LSGLT  YD  +  +E S+   + E I + ++ + ++ E
Sbjct:   82 EAWKILQKAYEGRGLSRRLGLLRSLFNTKLSENSSMEVYLNKIKEISHQLNEIESPLDDEFVAVIMLSGLTDDYDPLIMAIEHSTSKLSTEIISQKLLQETQKRE 186
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72593.14928.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
UPI00103FEA559.980e-629.52uncharacterized protein LOC114361313 n=2 Tax=Ostri... [more]
UPI001F8D56D12.050e-526.67Uncharacterized protein n=1 Tax=Spodoptera exigua ... [more]
A0A2H1WMK4_SPOFR3.200e-526.67SFRICE_021333 n=1 Tax=Spodoptera frugiperda TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72593contigH-elongata_contig72593:2753..3109 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size357
Cds size345
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931127.8170826-UTR-H-elongata_contig72593:2752..27641622931127.8170826-UTR-H-elongata_contig72593:2752..2764Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig72593 2753..2764 +
1691679709.3524816-UTR-H-elongata_contig72593:2752..27641691679709.3524816-UTR-H-elongata_contig72593:2752..2764Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig72593 2753..2764 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931127.8391852-CDS-H-elongata_contig72593:2764..31091622931127.8391852-CDS-H-elongata_contig72593:2764..3109Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72593 2765..3109 +
1691679709.3611279-CDS-H-elongata_contig72593:2764..31091691679709.3611279-CDS-H-elongata_contig72593:2764..3109Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72593 2765..3109 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72593.14928.1prot_H-elongata_contig72593.14928.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig72593 2765..3109 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig72593.14928.1

>prot_H-elongata_contig72593.14928.1 ID=prot_H-elongata_contig72593.14928.1|Name=mRNA_H-elongata_contig72593.14928.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
MYYINIFKEAWSKLVQHYRASGLKERRRLTVDFYTMKMDLGEHPREFLLQ
VDQMVKELERVERPVDSKDVDIVILSGLTPQYDAEVRMLESSSDWPTREW
IERAVINQYERLESE
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mRNA from alignment at H-elongata_contig72593:2753..3109+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig72593.14928.1 ID=mRNA_H-elongata_contig72593.14928.1|Name=mRNA_H-elongata_contig72593.14928.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=357bp|location=Sequence derived from alignment at H-elongata_contig72593:2753..3109+ (Himanthalia elongata Himel1 dioecious)
ATATTAACATCTATGTATTATATTAACATATTCAAAGAGGCGTGGTCAAA
ACTCGTACAGCACTACCGCGCCAGTGGCCTCAAGGAGCGACGCCGTCTCA
CCGTGGATTTCTATACCATGAAGATGGATCTCGGCGAGCATCCGCGCGAA
TTTTTGCTGCAAGTGGACCAGATGGTCAAGGAACTAGAGAGGGTGGAGCG
ACCGGTGGACTCCAAGGACGTGGACATCGTAATCTTGAGCGGCCTCACTC
CCCAGTATGACGCCGAGGTTCGAATGCTGGAGAGCTCATCGGATTGGCCC
ACTCGAGAATGGATAGAACGCGCTGTCATCAACCAGTACGAGCGCCTGGA
GTCCGAA
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Coding sequence (CDS) from alignment at H-elongata_contig72593:2753..3109+

>mRNA_H-elongata_contig72593.14928.1 ID=mRNA_H-elongata_contig72593.14928.1|Name=mRNA_H-elongata_contig72593.14928.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig72593:2753..3109+ (Himanthalia elongata Himel1 dioecious)
ATGTATTATATTAACATATTCAAAGAGGCGTGGTCAAAACTCGTACAGCA
CTACCGCGCCAGTGGCCTCAAGGAGCGACGCCGTCTCACCGTGGATTTCT
ATACCATGAAGATGGATCTCGGCGAGCATCCGCGCGAATTTTTGCTGCAA
GTGGACCAGATGGTCAAGGAACTAGAGAGGGTGGAGCGACCGGTGGACTC
CAAGGACGTGGACATCGTAATCTTGAGCGGCCTCACTCCCCAGTATGACG
CCGAGGTTCGAATGCTGGAGAGCTCATCGGATTGGCCCACTCGAGAATGG
ATAGAACGCGCTGTCATCAACCAGTACGAGCGCCTGGAGTCCGAAATGTA
TTATATTAACATATTCAAAGAGGCGTGGTCAAAACTCGTACAGCACTACC
GCGCCAGTGGCCTCAAGGAGCGACGCCGTCTCACCGTGGATTTCTATACC
ATGAAGATGGATCTCGGCGAGCATCCGCGCGAATTTTTGCTGCAAGTGGA
CCAGATGGTCAAGGAACTAGAGAGGGTGGAGCGACCGGTGGACTCCAAGG
ACGTGGACATCGTAATCTTGAGCGGCCTCACTCCCCAGTATGACGCCGAG
GTTCGAATGCTGGAGAGCTCATCGGATTGGCCCACTCGAGAATGGATAGA
ACGCGCTGTCATCAACCAGTACGAGCGCCTGGAGTCCGAA
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