mRNA_H-elongata_contig72560.14925.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig72560.14925.1
Unique NamemRNA_H-elongata_contig72560.14925.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72560.14925.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72560contigH-elongata_contig72560:810..3046 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1366
Cds size1068
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72560.14925.1prot_H-elongata_contig72560.14925.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig72560 921..2859 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931127.3702369-UTR-H-elongata_contig72560:809..9201622931127.3702369-UTR-H-elongata_contig72560:809..920Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig72560 810..920 +
1691679709.0987806-UTR-H-elongata_contig72560:809..9201691679709.0987806-UTR-H-elongata_contig72560:809..920Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig72560 810..920 +
1622931127.4272158-UTR-H-elongata_contig72560:2859..30461622931127.4272158-UTR-H-elongata_contig72560:2859..3046Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig72560 2860..3046 +
1691679709.1713943-UTR-H-elongata_contig72560:2859..30461691679709.1713943-UTR-H-elongata_contig72560:2859..3046Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig72560 2860..3046 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931127.383968-CDS-H-elongata_contig72560:920..14791622931127.383968-CDS-H-elongata_contig72560:920..1479Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72560 921..1479 +
1691679709.114844-CDS-H-elongata_contig72560:920..14791691679709.114844-CDS-H-elongata_contig72560:920..1479Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72560 921..1479 +
1622931127.3969002-CDS-H-elongata_contig72560:1857..21031622931127.3969002-CDS-H-elongata_contig72560:1857..2103Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72560 1858..2103 +
1691679709.1332119-CDS-H-elongata_contig72560:1857..21031691679709.1332119-CDS-H-elongata_contig72560:1857..2103Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72560 1858..2103 +
1622931127.4083302-CDS-H-elongata_contig72560:2596..28591622931127.4083302-CDS-H-elongata_contig72560:2596..2859Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72560 2597..2859 +
1691679709.156361-CDS-H-elongata_contig72560:2596..28591691679709.156361-CDS-H-elongata_contig72560:2596..2859Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72560 2597..2859 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig72560.14925.1

>prot_H-elongata_contig72560.14925.1 ID=prot_H-elongata_contig72560.14925.1|Name=mRNA_H-elongata_contig72560.14925.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=356bp
MDVMNAGQNTAQLFLELAAVGLELDKIATACYLQRNENESSLHQKQLQES
LAVSRGKLDAVGASLINRCVEGTAQHERWNKIIRDMNAKFHATCNFQRAG
EIRSTGAASPAGAPLLPSVVHHLNSNSNNTAGMVSSGDLGTANSIASGTS
SEARMEATANRHLFRENTTHDPPSLPFPLRAGPTGAAAAEEDPKLGSADT
GAVLTSSIHRASAEWGGQQSDSAPPQISSHEGTRRGQGADALLRLSGSVD
LAQQSHESKDETDGVSPIVAAYDHVAAISEHSARTRPIDPEVLGPRKQPT
KTATTTWGRFLAQAQAQAPAPRSEAGADAGRGSLVQFPSPGLKCVEFPGE
APVNS*
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mRNA from alignment at H-elongata_contig72560:810..3046+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig72560.14925.1 ID=mRNA_H-elongata_contig72560.14925.1|Name=mRNA_H-elongata_contig72560.14925.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2237bp|location=Sequence derived from alignment at H-elongata_contig72560:810..3046+ (Himanthalia elongata Himel1 dioecious)
CTCCAACCCTAAACTACCTTTGTTCTGTCGGGAGCACCGTCGTATACCTC
AAACAAGTCTCGTATATCATCTTCGACACCCGAGTGACTTGGTGAGAATT
GATTCACTACCATGGACGTGATGAACGCGGGGCAAAACACGGCCCAGTTA
TTTCTTGAGCTCGCCGCCGTGGGGCTCGAGCTAGACAAAATCGCAACCGC
CTGTTATCTCCAGCGTAATGAAAATGAATCATCGCTCCATCAGAAGCAAC
TTCAAGAGAGCCTCGCTGTATCAAGGGGCAAGCTCGACGCTGTAGGAGCT
TCCCTAATAAATCGCTGTGTGGAAGGAACAGCGCAGCACGAGCGGTGGAA
TAAGATAATACGCGATATGAATGCCAAGTTCCACGCAACGTGCAACTTTC
AACGAGCAGGGGAGATACGTTCTACCGGAGCAGCTAGCCCTGCGGGGGCT
CCTTTGTTGCCCAGCGTTGTCCACCATCTTAATAGTAATAGCAATAATAC
CGCTGGGATGGTGTCTTCGGGGGATTTAGGCACAGCGAACAGCATTGCGT
CAGGAACTTCCTCGGAGGCTCGTATGGAAGCAACGGCCAACCGCCACCTT
TTCAGAGAAAATACGACGCATGATCCGCCATCACTACCGTTTCCCCTTAG
GGCCGGGCCGACAGGGGCGGGTGAGAACCGAGAACTGAGAAAAATTACTC
ATTGCGAGTGTGCCATCGACTGCAACGTCGAGGTCGGCAGCGCGCGCGTC
ACCATCTGATCGTCCGGCCTTCGTCGCGTAGCATGGAGGTGTGATCGTTT
CCACCAGGGAAATGGTGTAAGCAAGCATCTAGACTACTACTGCACTACGT
ACTAAATACTACTGTCGTCGCCCCTTTACTTCTATTCACACCTCTACCCG
TCCCCACAGGTCCTGCACCTAAAATATCTCATGTCCGTATATTTTATGTA
GCTTCAACTGACTGTCTGTACCGACTCGTGGTACGCTGCGTTGTTGCGCT
GATGGCATGCCGCTATCGCATCGCTTCCCGCTTGCAACCTTTGTACAGCA
GCAGCAGAAGAAGATCCCAAGTTAGGATCGGCAGATACCGGCGCTGTTCT
GACGAGCTCCATCCATCGCGCCAGCGCCGAGTGGGGTGGTCAGCAGTCCG
ACTCAGCGCCACCCCAAATCAGCAGTCACGAGGGAACCCGCCGGGGCCAA
GGCGCCGATGCGCTGCTTCGCCTTAGTGGGAGCGTTGACTTAGCCCAGCA
GAGTCACGAATCGAAGGATGAGACAGACGGCGTAAGCCCCATAGGTGAGA
CAAGAAGAAGCATTTTTGGTCCTCTGGGGTTACCGTTGGTTTTTGCGGTT
TTGCACGTCATCCGGGGTTTCCAATATTATCAGGCGTTTTCTTGTGTGTC
GCGCAATGGCCCCCTTGCTCTGCTTTTTAACGACGGCATCTTGCGCTAGA
TTTCTTAAGCAGCACACTCGGTCTAATCGATCTACAAGAGGGTGTTGCAG
AGGCTCCGACAAACACCGCTTGCCTCGACTCGTGGTGTAACCGTCACACC
AGACGCAAGGACGCTACGACGAGAATTCACCGCAAACGCCCCCCCCGCCC
CCCACCCCCCCCCCGCCCCCCCCCCCCCCCCCCCATCCCCCCCCCACCCC
CCCGCGGGGGTGACCGGCACCCACCCACCCAGGACCCGCACGCAGGAAAC
CCCCCCCAAACCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCTCTCCTC
GATATTGCCCCAAAACGCCCCCGCGCTGAAATGAAAGTTGCAGCGTACGA
TCACGTGGCAGCGATCTCGGAGCACAGCGCTCGTACGAGACCCATCGATC
CCGAGGTGCTCGGCCCCCGGAAGCAACCAACCAAGACTGCCACCACAACG
TGGGGTCGGTTTCTTGCTCAGGCTCAGGCTCAGGCTCCCGCGCCGAGGTC
AGAAGCGGGCGCCGATGCGGGTCGAGGTTCTCTTGTTCAGTTCCCTAGTC
CCGGCTTAAAATGCGTTGAGTTCCCTGGTGAAGCTCCCGTAAACAGTTAG
GCTCCGCGACGTCACACGGTGGGATATATTCAATCGATATATCCCTTTTG
CTGTGTCTTCGGTTGTGGTTCTCGAGGGTACGCTTGTCAGATCTTTAAAC
CATCAAAACAACATCGCCGTAGCAAGCGTATGTAGCGAGCTCGCCCCAGC
CACCGTCGATTGCACTTCGAGGTGCGCTTGAATGGGT
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Coding sequence (CDS) from alignment at H-elongata_contig72560:810..3046+

>mRNA_H-elongata_contig72560.14925.1 ID=mRNA_H-elongata_contig72560.14925.1|Name=mRNA_H-elongata_contig72560.14925.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2136bp|location=Sequence derived from alignment at H-elongata_contig72560:810..3046+ (Himanthalia elongata Himel1 dioecious)
ATGGACGTGATGAACGCGGGGCAAAACACGGCCCAGTTATTTCTTGAGCT
CGCCGCCGTGGGGCTCGAGCTAGACAAAATCGCAACCGCCTGTTATCTCC
AGCGTAATGAAAATGAATCATCGCTCCATCAGAAGCAACTTCAAGAGAGC
CTCGCTGTATCAAGGGGCAAGCTCGACGCTGTAGGAGCTTCCCTAATAAA
TCGCTGTGTGGAAGGAACAGCGCAGCACGAGCGGTGGAATAAGATAATAC
GCGATATGAATGCCAAGTTCCACGCAACGTGCAACTTTCAACGAGCAGGG
GAGATACGTTCTACCGGAGCAGCTAGCCCTGCGGGGGCTCCTTTGTTGCC
CAGCGTTGTCCACCATCTTAATAGTAATAGCAATAATACCGCTGGGATGG
TGTCTTCGGGGGATTTAGGCACAGCGAACAGCATTGCGTCAGGAACTTCC
TCGGAGGCTCGTATGGAAGCAACGGCCAACCGCCACCTTTTCAGAGAAAA
TACGACGCATGATCCGCCATCACTACCGTTTCCCCTTAGGGCCGGGCCGA
CAGGGGCGGATGGACGTGATGAACGCGGGGCAAAACACGGCCCAGTTATT
TCTTGAGCTCGCCGCCGTGGGGCTCGAGCTAGACAAAATCGCAACCGCCT
GTTATCTCCAGCGTAATGAAAATGAATCATCGCTCCATCAGAAGCAACTT
CAAGAGAGCCTCGCTGTATCAAGGGGCAAGCTCGACGCTGTAGGAGCTTC
CCTAATAAATCGCTGTGTGGAAGGAACAGCGCAGCACGAGCGGTGGAATA
AGATAATACGCGATATGAATGCCAAGTTCCACGCAACGTGCAACTTTCAA
CGAGCAGGGGAGATACGTTCTACCGGAGCAGCTAGCCCTGCGGGGGCTCC
TTTGTTGCCCAGCGTTGTCCACCATCTTAATAGTAATAGCAATAATACCG
CTGGGATGGTGTCTTCGGGGGATTTAGGCACAGCGAACAGCATTGCGTCA
GGAACTTCCTCGGAGGCTCGTATGGAAGCAACGGCCAACCGCCACCTTTT
CAGAGAAAATACGACGCATGATCCGCCATCACTACCGTTTCCCCTTAGGG
CCGGGCCGACAGGGGCGGCAGCAGCAGAAGAAGATCCCAAGTTAGGATCG
GCAGATACCGGCGCTGTTCTGACGAGCTCCATCCATCGCGCCAGCGCCGA
GTGGGGTGGTCAGCAGTCCGACTCAGCGCCACCCCAAATCAGCAGTCACG
AGGGAACCCGCCGGGGCCAAGGCGCCGATGCGCTGCTTCGCCTTAGTGGG
AGCGTTGACTTAGCCCAGCAGAGTCACGAATCGAAGGATGAGACAGACGG
CGTAAGCCCCATAGCAGCAGCAGAAGAAGATCCCAAGTTAGGATCGGCAG
ATACCGGCGCTGTTCTGACGAGCTCCATCCATCGCGCCAGCGCCGAGTGG
GGTGGTCAGCAGTCCGACTCAGCGCCACCCCAAATCAGCAGTCACGAGGG
AACCCGCCGGGGCCAAGGCGCCGATGCGCTGCTTCGCCTTAGTGGGAGCG
TTGACTTAGCCCAGCAGAGTCACGAATCGAAGGATGAGACAGACGGCGTA
AGCCCCATAGTTGCAGCGTACGATCACGTGGCAGCGATCTCGGAGCACAG
CGCTCGTACGAGACCCATCGATCCCGAGGTGCTCGGCCCCCGGAAGCAAC
CAACCAAGACTGCCACCACAACGTGGGGTCGGTTTCTTGCTCAGGCTCAG
GCTCAGGCTCCCGCGCCGAGGTCAGAAGCGGGCGCCGATGCGGGTCGAGG
TTCTCTTGTTCAGTTCCCTAGTCCCGGCTTAAAATGCGTTGAGTTCCCTG
GTGAAGCTCCCGTAAACAGTTAGTTGCAGCGTACGATCACGTGGCAGCGA
TCTCGGAGCACAGCGCTCGTACGAGACCCATCGATCCCGAGGTGCTCGGC
CCCCGGAAGCAACCAACCAAGACTGCCACCACAACGTGGGGTCGGTTTCT
TGCTCAGGCTCAGGCTCAGGCTCCCGCGCCGAGGTCAGAAGCGGGCGCCG
ATGCGGGTCGAGGTTCTCTTGTTCAGTTCCCTAGTCCCGGCTTAAAATGC
GTTGAGTTCCCTGGTGAAGCTCCCGTAAACAGTTAG
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