mRNA_H-elongata_contig72548.14924.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig72548.14924.1
Unique NamemRNA_H-elongata_contig72548.14924.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig72548.14924.1 vs. uniprot
Match: D7FP06_ECTSI (Chalcone Isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP06_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 2.810e-12
Identity = 33/41 (80.49%), Postives = 33/41 (80.49%), Query Frame = 1
Query:    1 GLSLMGTGVRVKKIGPVAVNVYAVGLYVDEKRAANELAAHK 123
            G SLMGTGVRVKKIGP  V VYAVGLYVDEK AA EL  HK
Sbjct:   53 GSSLMGTGVRVKKIGPAGVKVYAVGLYVDEKAAAKELEVHK 93          
BLAST of mRNA_H-elongata_contig72548.14924.1 vs. uniprot
Match: A0A835Z9G1_9STRA (Chalcone isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9G1_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 3.850e-8
Identity = 26/38 (68.42%), Postives = 30/38 (78.95%), Query Frame = 1
Query:    7 SLMGTGVRVKKIGPVAVNVYAVGLYVDEKRAANELAAH 120
            SL GTGVRVKKIGP A  VYAVG+YVD  +A +EL+ H
Sbjct:   42 SLAGTGVRVKKIGPAAFKVYAVGMYVDSAKARSELSKH 79          
BLAST of mRNA_H-elongata_contig72548.14924.1 vs. uniprot
Match: A0A7R9YAW0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YAW0_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 3.970e-7
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 1
Query:    7 SLMGTGVRVKKIGPVAVNVYAVGLYVDEKRAANEL 111
            +L GTGVRVKKIGPVAV VYAVGLYVD++   + L
Sbjct:   46 TLAGTGVRVKKIGPVAVKVYAVGLYVDQRAVQSSL 80          
BLAST of mRNA_H-elongata_contig72548.14924.1 vs. uniprot
Match: A0A7S2S0W0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S0W0_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.490e-6
Identity = 23/41 (56.10%), Postives = 33/41 (80.49%), Query Frame = 1
Query:    1 GLSLMGTGVRVKKIGPVAVNVYAVGLYVDEKRAANELAAHK 123
            G+SL+G GVRVKK+G ++VNVYA+G++VD +R+   L A K
Sbjct:  332 GMSLLGCGVRVKKLGMISVNVYALGIFVDAERSKPHLEAFK 372          
BLAST of mRNA_H-elongata_contig72548.14924.1 vs. uniprot
Match: W7TIJ2_9STRA (Chalcone isomerase, subgroup n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TIJ2_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 1.030e-5
Identity = 26/42 (61.90%), Postives = 31/42 (73.81%), Query Frame = 1
Query:    1 GLSLMGTGVRVKK-IGPVAVNVYAVGLYVDEKRAANELAAHK 123
            GLSL G GVRVKK +GP+AV VY VGLYVD+  A  +L+  K
Sbjct:   42 GLSLAGVGVRVKKLVGPLAVKVYGVGLYVDKGVAVRKLSKFK 83          
BLAST of mRNA_H-elongata_contig72548.14924.1 vs. uniprot
Match: A0A7S1DPN3_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DPN3_HEMAN)

HSP 1 Score: 46.6 bits (109), Expect = 2.370e-5
Identity = 28/48 (58.33%), Postives = 33/48 (68.75%), Query Frame = 1
Query:    4 LSLMGTGVRVKKI-GPVAVNVYAVGLYVDE-------KRAANELAAHK 123
            L LMG G R KKI GPVAVNVYA+G+YVD+       K A++E AA K
Sbjct:   29 LELMGCGERKKKIVGPVAVNVYAIGMYVDQGPAIVAGKGASSEAAAAK 76          
BLAST of mRNA_H-elongata_contig72548.14924.1 vs. uniprot
Match: A0A830H745_9CHLO (Chalcone_isomerase domain-containing protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830H745_9CHLO)

HSP 1 Score: 48.1 bits (113), Expect = 2.980e-5
Identity = 25/38 (65.79%), Postives = 28/38 (73.68%), Query Frame = 1
Query:    1 GLSLMGTGVRVKKIGPVAVNVYAVGLYVDEK--RAANE 108
            GL  +G GVRVKKIGPV V VYAV LYVD    +AAN+
Sbjct:   79 GLKCVGAGVRVKKIGPVRVKVYAVALYVDANGAKAAND 116          
BLAST of mRNA_H-elongata_contig72548.14924.1 vs. uniprot
Match: A0A7S1DPI2_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DPI2_HEMAN)

HSP 1 Score: 46.6 bits (109), Expect = 8.740e-5
Identity = 28/48 (58.33%), Postives = 33/48 (68.75%), Query Frame = 1
Query:    4 LSLMGTGVRVKKI-GPVAVNVYAVGLYVDE-------KRAANELAAHK 123
            L LMG G R KKI GPVAVNVYA+G+YVD+       K A++E AA K
Sbjct:   29 LELMGCGERKKKIVGPVAVNVYAIGMYVDQGPAIVAGKGASSEAAAAK 76          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72548.14924.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FP06_ECTSI2.810e-1280.49Chalcone Isomerase n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A835Z9G1_9STRA3.850e-868.42Chalcone isomerase n=1 Tax=Tribonema minus TaxID=3... [more]
A0A7R9YAW0_9STRA3.970e-771.43Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2S0W0_9STRA1.490e-656.10Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
W7TIJ2_9STRA1.030e-561.90Chalcone isomerase, subgroup n=3 Tax=Monodopsidace... [more]
A0A7S1DPN3_HEMAN2.370e-558.33Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A830H745_9CHLO2.980e-565.79Chalcone_isomerase domain-containing protein n=1 T... [more]
A0A7S1DPI2_HEMAN8.740e-558.33Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72548contigH-elongata_contig72548:83..208 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.6
Seed ortholog evalue9e-08
Seed eggNOG ortholog2880.D7FP06
EggNOG free text desc.Chalcone isomerase-like
EggNOG OGs2E0MF@1,2S81H@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size126
Cds size114
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931127.3164759-CDS-H-elongata_contig72548:82..1961622931127.3164759-CDS-H-elongata_contig72548:82..196Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72548 83..196 -
1691679709.0728583-CDS-H-elongata_contig72548:82..1961691679709.0728583-CDS-H-elongata_contig72548:82..196Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72548 83..196 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931127.329095-UTR-H-elongata_contig72548:196..2081622931127.329095-UTR-H-elongata_contig72548:196..208Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig72548 197..208 -
1691679709.0844417-UTR-H-elongata_contig72548:196..2081691679709.0844417-UTR-H-elongata_contig72548:196..208Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig72548 197..208 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72548.14924.1prot_H-elongata_contig72548.14924.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig72548 83..196 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig72548.14924.1

>prot_H-elongata_contig72548.14924.1 ID=prot_H-elongata_contig72548.14924.1|Name=mRNA_H-elongata_contig72548.14924.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=38bp
MGTGVRVKKIGPVAVNVYAVGLYVDEKRAANELAAHK*
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mRNA from alignment at H-elongata_contig72548:83..208-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig72548.14924.1 ID=mRNA_H-elongata_contig72548.14924.1|Name=mRNA_H-elongata_contig72548.14924.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=126bp|location=Sequence derived from alignment at H-elongata_contig72548:83..208- (Himanthalia elongata Himel1 dioecious)
GGCCTCAGCCTTATGGGGACAGGGGTGCGCGTGAAGAAGATTGGACCCGT GGCGGTCAATGTCTACGCGGTCGGGCTCTACGTGGACGAGAAGAGAGCGG CCAACGAGCTCGCTGCGCACAAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig72548:83..208-

>mRNA_H-elongata_contig72548.14924.1 ID=mRNA_H-elongata_contig72548.14924.1|Name=mRNA_H-elongata_contig72548.14924.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=228bp|location=Sequence derived from alignment at H-elongata_contig72548:83..208- (Himanthalia elongata Himel1 dioecious)
ATGGGGACAGGGGTGCGCGTGAAGAAGATTGGACCCGTGGCGGTCAATGT
CTACGCGGTCGGGCTCTACGTGGACGAGAAGAGAGCGGCCAACGAGCTCG
CTGCGCACAAGTGAATGGGGACAGGGGTGCGCGTGAAGAAGATTGGACCC
GTGGCGGTCAATGTCTACGCGGTCGGGCTCTACGTGGACGAGAAGAGAGC
GGCCAACGAGCTCGCTGCGCACAAGTGA
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