mRNA_H-elongata_contig72530.14922.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig72530.14922.1 vs. uniprot
Match: D7G4M1_ECTSI (Smc-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4M1_ECTSI) HSP 1 Score: 121 bits (303), Expect = 9.910e-30 Identity = 59/97 (60.82%), Postives = 71/97 (73.20%), Query Frame = 1
Query: 1 FQSRPVGPIGAYVQLKEECKSHRVSIEAHLRGSLNNFIVSNHKDKGTLITLMKTFRRAGKWMMPTIIVQPLESRYNPPENPEGFLQIMQAINVTDDQ 291
F S PVGPIGA +QLKEE K RV IE HL LNNF+VS H+D+ TL+ +++ FR +W +PTIIVQ L+ RY P NP GFLQIMQAINV +DQ
Sbjct: 537 FHSPPVGPIGASIQLKEEYKGFRVCIEGHLSRHLNNFVVSCHQDRATLMRIIRAFRGNQRWFVPTIIVQTLQPRYRPQSNPPGFLQIMQAINVDNDQ 633
BLAST of mRNA_H-elongata_contig72530.14922.1 vs. uniprot
Match: D7G4M2_ECTSI (Smc-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4M2_ECTSI) HSP 1 Score: 108 bits (271), Expect = 2.070e-25 Identity = 54/102 (52.94%), Postives = 74/102 (72.55%), Query Frame = 1
Query: 1 FQSRPVGPIGAYVQLKEECKSHRVSIEAHLRGSLNNFIVSNHKDKGTLITLMKTFRRAGK-----WMMPTIIVQPLESRYNPPENPEGFLQIMQAINVTDDQ 291
F S PVGPIGA +QLKEEC+ R IE HL +LNNF+VS +DK L+ +++++R + + + +PTIIVQ ++RY PP+NP G+LQIMQAINV +DQ
Sbjct: 630 FSSPPVGPIGASIQLKEECQEFRACIEGHLSRNLNNFVVSCQQDKTRLMAVVRSYRGSYRGSDKNFPLPTIIVQAPQARYRPPQNPPGYLQIMQAINVNNDQ 731
BLAST of mRNA_H-elongata_contig72530.14922.1 vs. uniprot
Match: A0A7S3EF87_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EF87_9RHOD) HSP 1 Score: 51.6 bits (122), Expect = 2.760e-5 Identity = 34/101 (33.66%), Postives = 59/101 (58.42%), Query Frame = 1
Query: 1 FQSRPVGPIGAYVQLKEECKSHRVSIEAHLRGSLNNFIVSNHKDKGTLITLMKTFRRAGKWMMPTIIVQPLESRYNPPEN---PEGFLQIMQAINVTDDQV 294
F+ +P+GP+GAYV +KEE + +I+ L +L+ ++V N D+G L L+ +R+ + II ++RY+ P++ P G +M AI V++D V
Sbjct: 519 FKKKPIGPVGAYVNVKEEEWAR--AIQHCLGSTLSAYLVDNSHDQGVLRKLVP--QRSYQ----AIIQTQFDARYDIPKSARAPHGLYAVMDAITVSEDPV 611
BLAST of mRNA_H-elongata_contig72530.14922.1 vs. uniprot
Match: A0A044QPJ6_ONCVO (AAA_23 domain-containing protein n=2 Tax=Onchocerca TaxID=6281 RepID=A0A044QPJ6_ONCVO) HSP 1 Score: 50.8 bits (120), Expect = 5.130e-5 Identity = 31/100 (31.00%), Postives = 57/100 (57.00%), Query Frame = 1
Query: 1 FQSRPVGPIGAYVQLKEECKSHRVSIEAHLRGSLNNFIVSNHKDKGTLITLMKTFRRAGKWMMPTIIVQPLESRYNPP--ENPEGFLQIMQAINVTDDQV 294
F +P+GPIGAY+++K++ S +++E LR L+ ++ N +D+ L ++++ + M II + ESRY+ E P +L + + I + DD V
Sbjct: 503 FSKKPIGPIGAYIRIKDD--SWALAVECCLRNLLSIWLCDNVQDRNILDSILRKYNIHA---MGYIISKFSESRYDITLFEPPSEYLTVARVITIADDNV 597
BLAST of mRNA_H-elongata_contig72530.14922.1 vs. uniprot
Match: A0A1S0TZX9_LOALO (SMC_N domain-containing protein n=2 Tax=Loa loa TaxID=7209 RepID=A0A1S0TZX9_LOALO) HSP 1 Score: 50.8 bits (120), Expect = 5.130e-5 Identity = 33/100 (33.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query: 1 FQSRPVGPIGAYVQLKEECKSHRVSIEAHLRGSLNNFIVSNHKDKGTLITLMKTFRRAGKWMMPTIIVQPLESRYNPP--ENPEGFLQIMQAINVTDDQV 294
F +P+GPIGAY+++K+E S +++E LR L+ ++ N +D+ L ++++ + M II + ESRY+ E P +L + + + VTDD V
Sbjct: 503 FSKKPIGPIGAYIRIKDE--SWALAVEHCLRHLLSVWLCDNVQDRNILDSILQKYNIR---TMGYIISKFSESRYDITLFEPPSEYLTVARMMTVTDDNV 597
BLAST of mRNA_H-elongata_contig72530.14922.1 vs. uniprot
Match: A0A8K0TNV0_9PEZI (Uncharacterized protein n=1 Tax=Plectosphaerella cucumerina TaxID=40658 RepID=A0A8K0TNV0_9PEZI) HSP 1 Score: 50.8 bits (120), Expect = 5.160e-5 Identity = 37/101 (36.63%), Postives = 60/101 (59.41%), Query Frame = 1
Query: 1 FQSRPVGPIGAYVQL-KEECKSHRVSIEAHLRGSLNNFIVSNHKDKGTLITLMKTFRRAGKWMMPTIIVQPL--ESRYNPPENPEGFLQIMQAINVTDDQV 294
F++RP+GPIG+Y+QL K E S IEA LN+F+VS+ D+ L M+T +G + +I + L ++++N P+ FL I++A+ + DD V
Sbjct: 570 FETRPLGPIGSYIQLLKPEWSS---IIEATFGQILNSFLVSSKNDQQLLAQHMRTLGISGTGI---VIGRRLAAKTKFNEPDG--RFLTILRALKINDDWV 662
BLAST of mRNA_H-elongata_contig72530.14922.1 vs. uniprot
Match: A0A8J2M7J7_9BILA (Hypothetical protein n=1 Tax=Cercopithifilaria johnstoni TaxID=2874296 RepID=A0A8J2M7J7_9BILA) HSP 1 Score: 50.4 bits (119), Expect = 7.010e-5 Identity = 32/100 (32.00%), Postives = 57/100 (57.00%), Query Frame = 1
Query: 1 FQSRPVGPIGAYVQLKEECKSHRVSIEAHLRGSLNNFIVSNHKDKGTLITLMKTFRRAGKWMMPTIIVQPLESRYNPP--ENPEGFLQIMQAINVTDDQV 294
F +P+GPIGAY+++K++ S +++E LR L+ ++ N +D+ L ++++ + M II + ESRYN E P +L + + + V DD V
Sbjct: 503 FSKKPIGPIGAYIRIKDD--SWALAVEHCLRHLLSVWLCDNVQDRNILDSILQKYNIRA---MGYIISKFSESRYNITLFEPPSEYLTVARMVTVMDDNV 597
BLAST of mRNA_H-elongata_contig72530.14922.1 vs. uniprot
Match: A0A0R3QQ20_9BILA (AAA_23 domain-containing protein n=1 Tax=Brugia timori TaxID=42155 RepID=A0A0R3QQ20_9BILA) HSP 1 Score: 50.4 bits (119), Expect = 7.010e-5 Identity = 34/101 (33.66%), Postives = 61/101 (60.40%), Query Frame = 1
Query: 1 FQSRPVGPIGAYVQLKEECKSHRVSIEAHLRGSLNNFIVSNHKDKGTLITLMKTFR-RAGKWMMPTIIVQPLESRYNPP--ENPEGFLQIMQAINVTDDQV 294
F +P+GPIGAY+++K++ S +++E LR L+ ++ N D+ L ++++++ RA + II + LESRY+ E P +L + + I VT+D V
Sbjct: 524 FSKKPIGPIGAYIRIKDD--SWALAVEHCLRHLLSVWLCDNVHDRNILDSILQSYNIRAVGY----IISKFLESRYDITSFEPPSEYLTVARMITVTNDNV 618
BLAST of mRNA_H-elongata_contig72530.14922.1 vs. uniprot
Match: UPI0019008667 (DNA repair protein n=1 Tax=Colletotrichum karsti TaxID=1095194 RepID=UPI0019008667) HSP 1 Score: 50.1 bits (118), Expect = 9.590e-5 Identity = 35/104 (33.65%), Postives = 54/104 (51.92%), Query Frame = 1
Query: 1 FQSRPVGPIGAYVQLKEECKSHRVSIEAHLRGSLNNFIVSNHKDKGTLITLMKTFRRAGKWMMPTIIVQPLESRYNPPENPEGFLQIMQAINVTDDQVHCTYIV 312
F +PVGPIGA++QL + S +E L +L+ F+VSN +D+ L LM+ F A + P II + L N E E F +++ + ++ V IV
Sbjct: 569 FDEKPVGPIGAHIQLLQPAWSS--ILETTLGATLDGFLVSNKRDQQRLARLMQRFNLAR--IPPIIIGKRLPPNVNLKEPDERFDTVLRVLKCDNELVRSQLIV 668 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72530.14922.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig72530.14922.1 >prot_H-elongata_contig72530.14922.1 ID=prot_H-elongata_contig72530.14922.1|Name=mRNA_H-elongata_contig72530.14922.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp FQSRPVGPIGAYVQLKEECKSHRVSIEAHLRGSLNNFIVSNHKDKGTLITback to top mRNA from alignment at H-elongata_contig72530:142..2886+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig72530.14922.1 ID=mRNA_H-elongata_contig72530.14922.1|Name=mRNA_H-elongata_contig72530.14922.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2745bp|location=Sequence derived from alignment at H-elongata_contig72530:142..2886+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig72530:142..2886+ >mRNA_H-elongata_contig72530.14922.1 ID=mRNA_H-elongata_contig72530.14922.1|Name=mRNA_H-elongata_contig72530.14922.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig72530:142..2886+ (Himanthalia elongata Himel1 dioecious)back to top |