mRNA_H-elongata_contig72528.14921.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig72528.14921.1 vs. uniprot
Match: A0A6H5K6Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6Y8_9PHAE) HSP 1 Score: 314 bits (804), Expect = 2.800e-101 Identity = 155/208 (74.52%), Postives = 178/208 (85.58%), Query Frame = 1
Query: 1 LWNAGALLLVVGSLVNFGSFGFAPQSLLASLGSVQFVSNIVFGKMILREVVTRRILIGTFTIILGNTITLCFGPHQDGNFDAQQLIALYDLEYNALLLLEILLALSLHTLYKTYKRSRDMGSPRRYSDVVMPLAYAACSAIVGTQSVIQAKCLSELLKMTFEGENQMASPLPYAVAAVWLGTTIFWLVRMNRALAMFQGLFIIPALQV 624
LW GA+LLV GSLVNF SFGFAPQSLLASLGSVQF+SN+VFGK+ILRE+VTRRI++GT TIILGNT+TLCF PHQD NF +L A YD EYN LLLLE+ +AL++H YK++KRS++ G PRR+SD+VMPLAYA CSAIVGTQSV+ AKCLSELL +TF GENQ+ S Y V A+WLGTTIFWLVRMNRALAMF GLFIIPALQV
Sbjct: 302 LWYLGAVLLVAGSLVNFASFGFAPQSLLASLGSVQFISNVVFGKVILREMVTRRIILGTATIILGNTLTLCFSPHQDDNFSTHELKAFYDAEYNTLLLLELAIALAMHAAYKSFKRSKEQGRPRRHSDLVMPLAYAICSAIVGTQSVVNAKCLSELLTLTFRGENQLGSIFTYLVFAIWLGTTIFWLVRMNRALAMFHGLFIIPALQV 509
BLAST of mRNA_H-elongata_contig72528.14921.1 vs. uniprot
Match: D7G9H4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9H4_ECTSI) HSP 1 Score: 313 bits (802), Expect = 1.100e-98 Identity = 154/208 (74.04%), Postives = 179/208 (86.06%), Query Frame = 1
Query: 1 LWNAGALLLVVGSLVNFGSFGFAPQSLLASLGSVQFVSNIVFGKMILREVVTRRILIGTFTIILGNTITLCFGPHQDGNFDAQQLIALYDLEYNALLLLEILLALSLHTLYKTYKRSRDMGSPRRYSDVVMPLAYAACSAIVGTQSVIQAKCLSELLKMTFEGENQMASPLPYAVAAVWLGTTIFWLVRMNRALAMFQGLFIIPALQV 624
LW GA+LLV GSLVNF SFGFAPQSLLASLGSVQF+SN+VFGK+ILRE+VTRRI++GT TIILGNT+TLCF PHQD NF +L A YD EYN LLLLE+ +AL++H YK++KRS++ G PRR+SD+VMPLAYA CSAIVGTQSV+ AKCLSELL +TF+GENQ+ S Y V A+WLGTTIFWLVRMN+ALAMF GLFIIPALQV
Sbjct: 305 LWYLGAVLLVAGSLVNFASFGFAPQSLLASLGSVQFISNVVFGKVILREMVTRRIILGTATIILGNTLTLCFSPHQDDNFSTHELKAFYDAEYNTLLLLELAIALAMHAAYKSFKRSKEQGRPRRHSDLVMPLAYAICSAIVGTQSVVNAKCLSELLTLTFQGENQLGSIFTYLVFAIWLGTTIFWLVRMNQALAMFHGLFIIPALQV 512
BLAST of mRNA_H-elongata_contig72528.14921.1 vs. uniprot
Match: A0A7R9YAD8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YAD8_9STRA) HSP 1 Score: 180 bits (457), Expect = 6.620e-51 Identity = 97/210 (46.19%), Postives = 131/210 (62.38%), Query Frame = 1
Query: 1 LWNAGALLLVVGSLVNFGSFGFAPQSLLASLGSVQFVSNIVFGKMILREVVTRRILIGTFTIILGNTITLCFGPHQDGNFDAQQLIALYDLEYNALLLLEILLALSLHTLYKTYKRSRDMGSPRR--YSDVVMPLAYAACSAIVGTQSVIQAKCLSELLKMTFEGENQMASPLPYAVAAVWLGTTIFWLVRMNRALAMFQGLFIIPALQV 624
+W G L+V G ++ FGS GFAPQSLLA LGS+QFVSN++ G+ +L+E VTRR +I T ++LG+ + + FG H++ ++ L LY + Y L+L +LLA LH +Y Y + G P Y V PL+Y SAI+GTQ I AK S ++ T G+NQ+ PL + + +IFWLVRMN AL MF GLFIIPALQV
Sbjct: 56 IWYIGVFLMVFGGILVFGSLGFAPQSLLAPLGSIQFVSNVIMGRFLLKETVTRRTIIATVLLMLGSALAVVFGDHEEQSYTLSDLEGLYTVGYVIFLVLVLLLAALLHFVYVKYHKYAKEGGPIAPPYHKYVYPLSYCNTSAIIGTQGAIFAKAASHIVDETISGDNQLKFPLSWVFIFGAIAGSIFWLVRMNSALKMFAGLFIIPALQV 265
BLAST of mRNA_H-elongata_contig72528.14921.1 vs. uniprot
Match: A0A7S1U9L0_9STRA (Hypothetical protein n=6 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U9L0_9STRA) HSP 1 Score: 159 bits (403), Expect = 7.150e-44 Identity = 82/209 (39.23%), Postives = 130/209 (62.20%), Query Frame = 1
Query: 4 WNAGALLLVVGSLVNFGSFGFAPQSLLASLGSVQFVSNIVFGKMILREVVTRRILIGTFTIILGNTITLCFGPHQDGNFDAQQLIALY-DLEYNALLLLEILLALSLHTLYKTYKRSRDMGSPRR-YSDVVMPLAYAACSAIVGTQSVIQAKCLSELLKMTFEGENQMASPLPYAVAAVWLGTTIFWLVRMNRALAMFQGLFIIPALQV 624
W G + + GSL+ F SFGFAPQS+LA+L +VQF++NI FGK +L E +T+R+++GT ++ G ++ + F H+ + ++ L +LY +L Y L + ++ L+ Y R G Y ++V P++Y SA++GTQ ++ AKC+S LL++T +G+NQ Y AVWL + I+W+ RM+ L +F+G FIIP LQV
Sbjct: 80 WFIGTSIFICGSLLLFASFGFAPQSVLAALEAVQFITNIFFGKFVLGEAITKRMVLGTVALVGGMSLVVAFSKHETSLYSSEDLQSLYGELAYIVFLAFAGVTLIASRVLFNVYGARRQQGLENLPYHNLVYPISYCYFSAMIGTQQLLMAKCISNLLRLTGDGDNQFTHWFTYFCIAVWLLSAIYWVYRMDLGLKLFKGPFIIPVLQV 288
BLAST of mRNA_H-elongata_contig72528.14921.1 vs. uniprot
Match: A0A2R6W3B2_MARPO (Probable magnesium transporter n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6W3B2_MARPO) HSP 1 Score: 156 bits (394), Expect = 8.580e-42 Identity = 89/214 (41.59%), Postives = 130/214 (60.75%), Query Frame = 1
Query: 4 WNAGALLLVVGSLVNFGSFGFAPQSLLASLGSVQFVSNIVFGKMILREVVTRRILIGTFTIILGNTITLCFGPHQDGNFDAQQLIALYD----LEYNALLLLEILLALSLHTLYKTYKR---SRDMGSPRRYSDVVMPLAYAACSAIVGTQSVIQAKCLSELLKMTFEGENQMASPLPYAVAAVWLGTTIFWLVRMNRALAMFQGLFIIPALQV 624
W G ++ +G+ +NF SFGFA QSLLA+LGSVQFVSN+ F ++L E VT RIL T I++GN + FG HQ + ++L+A Y L Y ALL IL+ +S H +YK + +R + + ++PL+YA S +GT SV+ AK LS L+++T GE Q+ + Y + ++LGT FW+ R+N LAMF + I+P LQ+
Sbjct: 73 WRFGVIVFSLGNCLNFISFGFAAQSLLAALGSVQFVSNVGFAYLVLNETVTGRILFATAFIVVGNIFLVAFGNHQSSTYTNEELLANYKDPLYLGYCALL---ILIVISQHFVYKRGRHLVMTRGEEAVGTFWRTMVPLSYAIVSGAIGTHSVLFAKSLSILMRLTLSGETQLDAFFTYLIFFLFLGTASFWMARLNEGLAMFDAILIVPMLQI 283
BLAST of mRNA_H-elongata_contig72528.14921.1 vs. uniprot
Match: A0A2K1K606_PHYPA (Probable magnesium transporter n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1K606_PHYPA) HSP 1 Score: 155 bits (392), Expect = 1.190e-41 Identity = 86/212 (40.57%), Postives = 127/212 (59.91%), Query Frame = 1
Query: 4 WNAGALLLVVGSLVNFGSFGFAPQSLLASLGSVQFVSNIVFGKMILREVVTRRILIGTFTIILGNTITLCFGPHQDGNFDAQQLIALYDLEYNALLLLEILLALSLHTLYKTYKRSRDMGSPRRYSDV-----VMPLAYAACSAIVGTQSVIQAKCLSELLKMTFEGENQMASPLPYAVAAVWLGTTIFWLVRMNRALAMFQGLFIIPALQV 624
W G ++ +G+++NF SFG+A QSLLA+LGSVQFVSN+ F ++L E+VTRRI++ T I++GN + FG HQ + QL+A Y L +L ++ H + Y+R R + + R V ++P YA S VG+ SV+ AK LS LL+ T EG+NQ+ Y V +++GT FW+ R+N LAMF + I+P LQ+
Sbjct: 60 WRIGVIVFSLGNILNFISFGYAAQSLLAALGSVQFVSNVFFAYLMLNEIVTRRIILATVFIMVGNGFLVAFGNHQSVIYTHGQLLASYKGHIYLTYLFILLCIVAAH--HSIYRRGRQLAASRGEDPVGVWRMLLPYTYAVVSGAVGSHSVLFAKSLSVLLRSTLEGDNQLDGWFTYIVFFLFVGTASFWMARLNDGLAMFDAILIVPMLQI 269
BLAST of mRNA_H-elongata_contig72528.14921.1 vs. uniprot
Match: A0A1Y1IJW3_KLENI (Probable magnesium transporter n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IJW3_KLENI) HSP 1 Score: 154 bits (390), Expect = 3.980e-41 Identity = 84/215 (39.07%), Postives = 129/215 (60.00%), Query Frame = 1
Query: 4 WNAGALLLVVGSLVNFGSFGFAPQSLLASLGSVQFVSNIVFGKMILREVVTRRILIGTFTIILGNTITLCFGPHQDGNFDAQQLIALYDLEYNALLLLEILLALSLHTLYKTYKRSRDMGSPRRYSD--------VVMPLAYAACSAIVGTQSVIQAKCLSELLKMTFEGENQMASPLPYAVAAVWLGTTIFWLVRMNRALAMFQGLFIIPALQV 624
W G ++ VG+ +NF SFG+A QSLLA+LGSVQF+SN+ F +L E VT RI++ T I++GN + FG H+ + L+ +Y E L+ +L L + LY Y+ + S R++SD ++P +YA S ++GTQSV+ AK LS L+++T G++Q+ YAVA ++ T FW+ R+N+ LAMF + I+P LQ+
Sbjct: 59 WQVGVVIFAVGNALNFISFGYAAQSLLAALGSVQFISNVGFAYFVLGENVTNRIVVATALIVVGNIFLVAFGNHESTTYGHDDLLHMY--ENPVYLVYCTVLVLLVGGLYCVYRYGLSVVSSRKFSDPTIPHQWRTLVPFSYAMVSGVIGTQSVLFAKSLSVLMRLTMHGDSQLDGWFTYAVAILFALTAAFWMARLNQGLAMFDAMLIVPMLQI 271
BLAST of mRNA_H-elongata_contig72528.14921.1 vs. uniprot
Match: A0A7I4DFZ4_PHYPA (Probable magnesium transporter n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4DFZ4_PHYPA) HSP 1 Score: 152 bits (384), Expect = 8.170e-41 Identity = 89/216 (41.20%), Postives = 128/216 (59.26%), Query Frame = 1
Query: 4 WNAGALLLVVGSLVNFGSFGFAPQSLLASLGSVQFVSNIVFGKMILREVVTRRILIGTFTIILGNTITLCFGPHQDGNFDAQQLIALYD----LEYNALLLLEILLALSLHTLYK-----TYKRSRDMGSPRRYSDVVMPLAYAACSAIVGTQSVIQAKCLSELLKMTFEGENQMASPLPYAVAAVWLGTTIFWLVRMNRALAMFQGLFIIPALQV 624
W G + G+++NF SFG+A QSLLA+LGS+QFVSN+ F ++L EVVTRRI++ T I++GN + FG HQ + ++QL+ Y L Y +LL + + H +Y+ T R D GS R +++P YA S VG+ SV+ AK LS LL+ T EGENQ+ Y V ++ GT FW+ R+N LA+F + I+P LQ+
Sbjct: 58 WRIGVAIFSFGNILNFISFGYAAQSLLAALGSIQFVSNVFFAYLMLNEVVTRRIVLATSFIVVGNGFLVAFGNHQSVIYTSEQLLRNYGGRVYLTYCFILLCIVAVH---HAIYRRGRQLTVSRGEDPGSVWR---MLLPYTYAVVSGAVGSHSVLFAKSLSVLLRSTLEGENQLDGLFTYLVFFLFAGTASFWMARLNDGLALFDAILIVPMLQI 267
BLAST of mRNA_H-elongata_contig72528.14921.1 vs. uniprot
Match: A0A7I4DHS0_PHYPA (Probable magnesium transporter n=4 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4DHS0_PHYPA) HSP 1 Score: 152 bits (384), Expect = 1.830e-40 Identity = 89/216 (41.20%), Postives = 128/216 (59.26%), Query Frame = 1
Query: 4 WNAGALLLVVGSLVNFGSFGFAPQSLLASLGSVQFVSNIVFGKMILREVVTRRILIGTFTIILGNTITLCFGPHQDGNFDAQQLIALYD----LEYNALLLLEILLALSLHTLYK-----TYKRSRDMGSPRRYSDVVMPLAYAACSAIVGTQSVIQAKCLSELLKMTFEGENQMASPLPYAVAAVWLGTTIFWLVRMNRALAMFQGLFIIPALQV 624
W G + G+++NF SFG+A QSLLA+LGS+QFVSN+ F ++L EVVTRRI++ T I++GN + FG HQ + ++QL+ Y L Y +LL + + H +Y+ T R D GS R +++P YA S VG+ SV+ AK LS LL+ T EGENQ+ Y V ++ GT FW+ R+N LA+F + I+P LQ+
Sbjct: 58 WRIGVAIFSFGNILNFISFGYAAQSLLAALGSIQFVSNVFFAYLMLNEVVTRRIVLATSFIVVGNGFLVAFGNHQSVIYTSEQLLRNYGGRVYLTYCFILLCIVAVH---HAIYRRGRQLTVSRGEDPGSVWR---MLLPYTYAVVSGAVGSHSVLFAKSLSVLLRSTLEGENQLDGLFTYLVFFLFAGTASFWMARLNDGLALFDAILIVPMLQI 267
BLAST of mRNA_H-elongata_contig72528.14921.1 vs. uniprot
Match: A8J5R4_CHLRE (Probable magnesium transporter (Fragment) n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8J5R4_CHLRE) HSP 1 Score: 147 bits (372), Expect = 5.270e-40 Identity = 78/209 (37.32%), Postives = 124/209 (59.33%), Query Frame = 1
Query: 4 WNAGALLLVVGSLVNFGSFGFAPQSLLASLGSVQFVSNIVFGKMILREVVTRRILIGTFTIILGNTITLCFGPHQDGNFDAQQLIALYDLE-YNALLLLEILLALSLHTLYKTYKRSRDMGSPRRYSDVVMPLAYAACSAIVGTQSVIQAKCLSELLKMTFEGENQMASPLPYAVAAVWLGTTIFWLVRMNRALAMFQGLFIIPALQVT 627
W G VG+++NF SFGFA QSLLA+LGS+QFVSN++F +L E + R ++I T I+ G + + FG + +QL LY Y L L + + + LY + PR + ++P+AYA SA++GTQSV+ +K +S +L++TF GENQ+ + + V ++L T +FW+ R+N+ L MF + I+P +Q++
Sbjct: 48 WVVGMSFFSVGNILNFTSFGFAAQSLLAALGSIQFVSNVIFAYFVLHEQINRMVIIATTCIVGGCVLLVVFGNQSGATYTVKQLTQLYGKPAYVVYLCLMGVGVVGGYMLYLHGSKKVAKNGPRGFWYAILPVAYAVFSALIGTQSVLFSKSMSVILRLTFTGENQLGNWYTWLVLPLFLATAVFWISRLNKGLRMFPAMIIVPVMQIS 256 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72528.14921.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig72528.14921.1 >prot_H-elongata_contig72528.14921.1 ID=prot_H-elongata_contig72528.14921.1|Name=mRNA_H-elongata_contig72528.14921.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=218bp LWNAGALLLVVGSLVNFGSFGFAPQSLLASLGSVQFVSNIVFGKMILREVback to top mRNA from alignment at H-elongata_contig72528:826..3058+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig72528.14921.1 ID=mRNA_H-elongata_contig72528.14921.1|Name=mRNA_H-elongata_contig72528.14921.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2233bp|location=Sequence derived from alignment at H-elongata_contig72528:826..3058+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig72528:826..3058+ >mRNA_H-elongata_contig72528.14921.1 ID=mRNA_H-elongata_contig72528.14921.1|Name=mRNA_H-elongata_contig72528.14921.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1308bp|location=Sequence derived from alignment at H-elongata_contig72528:826..3058+ (Himanthalia elongata Himel1 dioecious)back to top |