mRNA_H-elongata_contig72528.14921.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig72528.14921.1
Unique NamemRNA_H-elongata_contig72528.14921.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig72528.14921.1 vs. uniprot
Match: A0A6H5K6Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6Y8_9PHAE)

HSP 1 Score: 314 bits (804), Expect = 2.800e-101
Identity = 155/208 (74.52%), Postives = 178/208 (85.58%), Query Frame = 1
Query:    1 LWNAGALLLVVGSLVNFGSFGFAPQSLLASLGSVQFVSNIVFGKMILREVVTRRILIGTFTIILGNTITLCFGPHQDGNFDAQQLIALYDLEYNALLLLEILLALSLHTLYKTYKRSRDMGSPRRYSDVVMPLAYAACSAIVGTQSVIQAKCLSELLKMTFEGENQMASPLPYAVAAVWLGTTIFWLVRMNRALAMFQGLFIIPALQV 624
            LW  GA+LLV GSLVNF SFGFAPQSLLASLGSVQF+SN+VFGK+ILRE+VTRRI++GT TIILGNT+TLCF PHQD NF   +L A YD EYN LLLLE+ +AL++H  YK++KRS++ G PRR+SD+VMPLAYA CSAIVGTQSV+ AKCLSELL +TF GENQ+ S   Y V A+WLGTTIFWLVRMNRALAMF GLFIIPALQV
Sbjct:  302 LWYLGAVLLVAGSLVNFASFGFAPQSLLASLGSVQFISNVVFGKVILREMVTRRIILGTATIILGNTLTLCFSPHQDDNFSTHELKAFYDAEYNTLLLLELAIALAMHAAYKSFKRSKEQGRPRRHSDLVMPLAYAICSAIVGTQSVVNAKCLSELLTLTFRGENQLGSIFTYLVFAIWLGTTIFWLVRMNRALAMFHGLFIIPALQV 509          
BLAST of mRNA_H-elongata_contig72528.14921.1 vs. uniprot
Match: D7G9H4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9H4_ECTSI)

HSP 1 Score: 313 bits (802), Expect = 1.100e-98
Identity = 154/208 (74.04%), Postives = 179/208 (86.06%), Query Frame = 1
Query:    1 LWNAGALLLVVGSLVNFGSFGFAPQSLLASLGSVQFVSNIVFGKMILREVVTRRILIGTFTIILGNTITLCFGPHQDGNFDAQQLIALYDLEYNALLLLEILLALSLHTLYKTYKRSRDMGSPRRYSDVVMPLAYAACSAIVGTQSVIQAKCLSELLKMTFEGENQMASPLPYAVAAVWLGTTIFWLVRMNRALAMFQGLFIIPALQV 624
            LW  GA+LLV GSLVNF SFGFAPQSLLASLGSVQF+SN+VFGK+ILRE+VTRRI++GT TIILGNT+TLCF PHQD NF   +L A YD EYN LLLLE+ +AL++H  YK++KRS++ G PRR+SD+VMPLAYA CSAIVGTQSV+ AKCLSELL +TF+GENQ+ S   Y V A+WLGTTIFWLVRMN+ALAMF GLFIIPALQV
Sbjct:  305 LWYLGAVLLVAGSLVNFASFGFAPQSLLASLGSVQFISNVVFGKVILREMVTRRIILGTATIILGNTLTLCFSPHQDDNFSTHELKAFYDAEYNTLLLLELAIALAMHAAYKSFKRSKEQGRPRRHSDLVMPLAYAICSAIVGTQSVVNAKCLSELLTLTFQGENQLGSIFTYLVFAIWLGTTIFWLVRMNQALAMFHGLFIIPALQV 512          
BLAST of mRNA_H-elongata_contig72528.14921.1 vs. uniprot
Match: A0A7R9YAD8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YAD8_9STRA)

HSP 1 Score: 180 bits (457), Expect = 6.620e-51
Identity = 97/210 (46.19%), Postives = 131/210 (62.38%), Query Frame = 1
Query:    1 LWNAGALLLVVGSLVNFGSFGFAPQSLLASLGSVQFVSNIVFGKMILREVVTRRILIGTFTIILGNTITLCFGPHQDGNFDAQQLIALYDLEYNALLLLEILLALSLHTLYKTYKRSRDMGSPRR--YSDVVMPLAYAACSAIVGTQSVIQAKCLSELLKMTFEGENQMASPLPYAVAAVWLGTTIFWLVRMNRALAMFQGLFIIPALQV 624
            +W  G  L+V G ++ FGS GFAPQSLLA LGS+QFVSN++ G+ +L+E VTRR +I T  ++LG+ + + FG H++ ++    L  LY + Y   L+L +LLA  LH +Y  Y +    G P    Y   V PL+Y   SAI+GTQ  I AK  S ++  T  G+NQ+  PL +      +  +IFWLVRMN AL MF GLFIIPALQV
Sbjct:   56 IWYIGVFLMVFGGILVFGSLGFAPQSLLAPLGSIQFVSNVIMGRFLLKETVTRRTIIATVLLMLGSALAVVFGDHEEQSYTLSDLEGLYTVGYVIFLVLVLLLAALLHFVYVKYHKYAKEGGPIAPPYHKYVYPLSYCNTSAIIGTQGAIFAKAASHIVDETISGDNQLKFPLSWVFIFGAIAGSIFWLVRMNSALKMFAGLFIIPALQV 265          
BLAST of mRNA_H-elongata_contig72528.14921.1 vs. uniprot
Match: A0A7S1U9L0_9STRA (Hypothetical protein n=6 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U9L0_9STRA)

HSP 1 Score: 159 bits (403), Expect = 7.150e-44
Identity = 82/209 (39.23%), Postives = 130/209 (62.20%), Query Frame = 1
Query:    4 WNAGALLLVVGSLVNFGSFGFAPQSLLASLGSVQFVSNIVFGKMILREVVTRRILIGTFTIILGNTITLCFGPHQDGNFDAQQLIALY-DLEYNALLLLEILLALSLHTLYKTYKRSRDMGSPRR-YSDVVMPLAYAACSAIVGTQSVIQAKCLSELLKMTFEGENQMASPLPYAVAAVWLGTTIFWLVRMNRALAMFQGLFIIPALQV 624
            W  G  + + GSL+ F SFGFAPQS+LA+L +VQF++NI FGK +L E +T+R+++GT  ++ G ++ + F  H+   + ++ L +LY +L Y   L    +  ++   L+  Y   R  G     Y ++V P++Y   SA++GTQ ++ AKC+S LL++T +G+NQ      Y   AVWL + I+W+ RM+  L +F+G FIIP LQV
Sbjct:   80 WFIGTSIFICGSLLLFASFGFAPQSVLAALEAVQFITNIFFGKFVLGEAITKRMVLGTVALVGGMSLVVAFSKHETSLYSSEDLQSLYGELAYIVFLAFAGVTLIASRVLFNVYGARRQQGLENLPYHNLVYPISYCYFSAMIGTQQLLMAKCISNLLRLTGDGDNQFTHWFTYFCIAVWLLSAIYWVYRMDLGLKLFKGPFIIPVLQV 288          
BLAST of mRNA_H-elongata_contig72528.14921.1 vs. uniprot
Match: A0A2R6W3B2_MARPO (Probable magnesium transporter n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6W3B2_MARPO)

HSP 1 Score: 156 bits (394), Expect = 8.580e-42
Identity = 89/214 (41.59%), Postives = 130/214 (60.75%), Query Frame = 1
Query:    4 WNAGALLLVVGSLVNFGSFGFAPQSLLASLGSVQFVSNIVFGKMILREVVTRRILIGTFTIILGNTITLCFGPHQDGNFDAQQLIALYD----LEYNALLLLEILLALSLHTLYKTYKR---SRDMGSPRRYSDVVMPLAYAACSAIVGTQSVIQAKCLSELLKMTFEGENQMASPLPYAVAAVWLGTTIFWLVRMNRALAMFQGLFIIPALQV 624
            W  G ++  +G+ +NF SFGFA QSLLA+LGSVQFVSN+ F  ++L E VT RIL  T  I++GN   + FG HQ   +  ++L+A Y     L Y ALL   IL+ +S H +YK  +    +R   +   +   ++PL+YA  S  +GT SV+ AK LS L+++T  GE Q+ +   Y +  ++LGT  FW+ R+N  LAMF  + I+P LQ+
Sbjct:   73 WRFGVIVFSLGNCLNFISFGFAAQSLLAALGSVQFVSNVGFAYLVLNETVTGRILFATAFIVVGNIFLVAFGNHQSSTYTNEELLANYKDPLYLGYCALL---ILIVISQHFVYKRGRHLVMTRGEEAVGTFWRTMVPLSYAIVSGAIGTHSVLFAKSLSILMRLTLSGETQLDAFFTYLIFFLFLGTASFWMARLNEGLAMFDAILIVPMLQI 283          
BLAST of mRNA_H-elongata_contig72528.14921.1 vs. uniprot
Match: A0A2K1K606_PHYPA (Probable magnesium transporter n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1K606_PHYPA)

HSP 1 Score: 155 bits (392), Expect = 1.190e-41
Identity = 86/212 (40.57%), Postives = 127/212 (59.91%), Query Frame = 1
Query:    4 WNAGALLLVVGSLVNFGSFGFAPQSLLASLGSVQFVSNIVFGKMILREVVTRRILIGTFTIILGNTITLCFGPHQDGNFDAQQLIALYDLEYNALLLLEILLALSLHTLYKTYKRSRDMGSPRRYSDV-----VMPLAYAACSAIVGTQSVIQAKCLSELLKMTFEGENQMASPLPYAVAAVWLGTTIFWLVRMNRALAMFQGLFIIPALQV 624
            W  G ++  +G+++NF SFG+A QSLLA+LGSVQFVSN+ F  ++L E+VTRRI++ T  I++GN   + FG HQ   +   QL+A Y        L  +L  ++ H  +  Y+R R + + R    V     ++P  YA  S  VG+ SV+ AK LS LL+ T EG+NQ+     Y V  +++GT  FW+ R+N  LAMF  + I+P LQ+
Sbjct:   60 WRIGVIVFSLGNILNFISFGYAAQSLLAALGSVQFVSNVFFAYLMLNEIVTRRIILATVFIMVGNGFLVAFGNHQSVIYTHGQLLASYKGHIYLTYLFILLCIVAAH--HSIYRRGRQLAASRGEDPVGVWRMLLPYTYAVVSGAVGSHSVLFAKSLSVLLRSTLEGDNQLDGWFTYIVFFLFVGTASFWMARLNDGLAMFDAILIVPMLQI 269          
BLAST of mRNA_H-elongata_contig72528.14921.1 vs. uniprot
Match: A0A1Y1IJW3_KLENI (Probable magnesium transporter n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IJW3_KLENI)

HSP 1 Score: 154 bits (390), Expect = 3.980e-41
Identity = 84/215 (39.07%), Postives = 129/215 (60.00%), Query Frame = 1
Query:    4 WNAGALLLVVGSLVNFGSFGFAPQSLLASLGSVQFVSNIVFGKMILREVVTRRILIGTFTIILGNTITLCFGPHQDGNFDAQQLIALYDLEYNALLLLEILLALSLHTLYKTYKRSRDMGSPRRYSD--------VVMPLAYAACSAIVGTQSVIQAKCLSELLKMTFEGENQMASPLPYAVAAVWLGTTIFWLVRMNRALAMFQGLFIIPALQV 624
            W  G ++  VG+ +NF SFG+A QSLLA+LGSVQF+SN+ F   +L E VT RI++ T  I++GN   + FG H+   +    L+ +Y  E    L+   +L L +  LY  Y+    + S R++SD         ++P +YA  S ++GTQSV+ AK LS L+++T  G++Q+     YAVA ++  T  FW+ R+N+ LAMF  + I+P LQ+
Sbjct:   59 WQVGVVIFAVGNALNFISFGYAAQSLLAALGSVQFISNVGFAYFVLGENVTNRIVVATALIVVGNIFLVAFGNHESTTYGHDDLLHMY--ENPVYLVYCTVLVLLVGGLYCVYRYGLSVVSSRKFSDPTIPHQWRTLVPFSYAMVSGVIGTQSVLFAKSLSVLMRLTMHGDSQLDGWFTYAVAILFALTAAFWMARLNQGLAMFDAMLIVPMLQI 271          
BLAST of mRNA_H-elongata_contig72528.14921.1 vs. uniprot
Match: A0A7I4DFZ4_PHYPA (Probable magnesium transporter n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4DFZ4_PHYPA)

HSP 1 Score: 152 bits (384), Expect = 8.170e-41
Identity = 89/216 (41.20%), Postives = 128/216 (59.26%), Query Frame = 1
Query:    4 WNAGALLLVVGSLVNFGSFGFAPQSLLASLGSVQFVSNIVFGKMILREVVTRRILIGTFTIILGNTITLCFGPHQDGNFDAQQLIALYD----LEYNALLLLEILLALSLHTLYK-----TYKRSRDMGSPRRYSDVVMPLAYAACSAIVGTQSVIQAKCLSELLKMTFEGENQMASPLPYAVAAVWLGTTIFWLVRMNRALAMFQGLFIIPALQV 624
            W  G  +   G+++NF SFG+A QSLLA+LGS+QFVSN+ F  ++L EVVTRRI++ T  I++GN   + FG HQ   + ++QL+  Y     L Y  +LL  + +    H +Y+     T  R  D GS  R   +++P  YA  S  VG+ SV+ AK LS LL+ T EGENQ+     Y V  ++ GT  FW+ R+N  LA+F  + I+P LQ+
Sbjct:   58 WRIGVAIFSFGNILNFISFGYAAQSLLAALGSIQFVSNVFFAYLMLNEVVTRRIVLATSFIVVGNGFLVAFGNHQSVIYTSEQLLRNYGGRVYLTYCFILLCIVAVH---HAIYRRGRQLTVSRGEDPGSVWR---MLLPYTYAVVSGAVGSHSVLFAKSLSVLLRSTLEGENQLDGLFTYLVFFLFAGTASFWMARLNDGLALFDAILIVPMLQI 267          
BLAST of mRNA_H-elongata_contig72528.14921.1 vs. uniprot
Match: A0A7I4DHS0_PHYPA (Probable magnesium transporter n=4 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4DHS0_PHYPA)

HSP 1 Score: 152 bits (384), Expect = 1.830e-40
Identity = 89/216 (41.20%), Postives = 128/216 (59.26%), Query Frame = 1
Query:    4 WNAGALLLVVGSLVNFGSFGFAPQSLLASLGSVQFVSNIVFGKMILREVVTRRILIGTFTIILGNTITLCFGPHQDGNFDAQQLIALYD----LEYNALLLLEILLALSLHTLYK-----TYKRSRDMGSPRRYSDVVMPLAYAACSAIVGTQSVIQAKCLSELLKMTFEGENQMASPLPYAVAAVWLGTTIFWLVRMNRALAMFQGLFIIPALQV 624
            W  G  +   G+++NF SFG+A QSLLA+LGS+QFVSN+ F  ++L EVVTRRI++ T  I++GN   + FG HQ   + ++QL+  Y     L Y  +LL  + +    H +Y+     T  R  D GS  R   +++P  YA  S  VG+ SV+ AK LS LL+ T EGENQ+     Y V  ++ GT  FW+ R+N  LA+F  + I+P LQ+
Sbjct:   58 WRIGVAIFSFGNILNFISFGYAAQSLLAALGSIQFVSNVFFAYLMLNEVVTRRIVLATSFIVVGNGFLVAFGNHQSVIYTSEQLLRNYGGRVYLTYCFILLCIVAVH---HAIYRRGRQLTVSRGEDPGSVWR---MLLPYTYAVVSGAVGSHSVLFAKSLSVLLRSTLEGENQLDGLFTYLVFFLFAGTASFWMARLNDGLALFDAILIVPMLQI 267          
BLAST of mRNA_H-elongata_contig72528.14921.1 vs. uniprot
Match: A8J5R4_CHLRE (Probable magnesium transporter (Fragment) n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8J5R4_CHLRE)

HSP 1 Score: 147 bits (372), Expect = 5.270e-40
Identity = 78/209 (37.32%), Postives = 124/209 (59.33%), Query Frame = 1
Query:    4 WNAGALLLVVGSLVNFGSFGFAPQSLLASLGSVQFVSNIVFGKMILREVVTRRILIGTFTIILGNTITLCFGPHQDGNFDAQQLIALYDLE-YNALLLLEILLALSLHTLYKTYKRSRDMGSPRRYSDVVMPLAYAACSAIVGTQSVIQAKCLSELLKMTFEGENQMASPLPYAVAAVWLGTTIFWLVRMNRALAMFQGLFIIPALQVT 627
            W  G     VG+++NF SFGFA QSLLA+LGS+QFVSN++F   +L E + R ++I T  I+ G  + + FG      +  +QL  LY    Y   L L  +  +  + LY    +      PR +   ++P+AYA  SA++GTQSV+ +K +S +L++TF GENQ+ +   + V  ++L T +FW+ R+N+ L MF  + I+P +Q++
Sbjct:   48 WVVGMSFFSVGNILNFTSFGFAAQSLLAALGSIQFVSNVIFAYFVLHEQINRMVIIATTCIVGGCVLLVVFGNQSGATYTVKQLTQLYGKPAYVVYLCLMGVGVVGGYMLYLHGSKKVAKNGPRGFWYAILPVAYAVFSALIGTQSVLFSKSMSVILRLTFTGENQLGNWYTWLVLPLFLATAVFWISRLNKGLRMFPAMIIVPVMQIS 256          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72528.14921.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K6Y8_9PHAE2.800e-10174.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G9H4_ECTSI1.100e-9874.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7R9YAD8_9STRA6.620e-5146.19Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S1U9L0_9STRA7.150e-4439.23Hypothetical protein n=6 Tax=Phaeomonas parva TaxI... [more]
A0A2R6W3B2_MARPO8.580e-4241.59Probable magnesium transporter n=2 Tax=Marchantia ... [more]
A0A2K1K606_PHYPA1.190e-4140.57Probable magnesium transporter n=2 Tax=Physcomitri... [more]
A0A1Y1IJW3_KLENI3.980e-4139.07Probable magnesium transporter n=1 Tax=Klebsormidi... [more]
A0A7I4DFZ4_PHYPA8.170e-4141.20Probable magnesium transporter n=1 Tax=Physcomitri... [more]
A0A7I4DHS0_PHYPA1.830e-4041.20Probable magnesium transporter n=4 Tax=Physcomitri... [more]
A8J5R4_CHLRE5.270e-4037.32Probable magnesium transporter (Fragment) n=1 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72528contigH-elongata_contig72528:826..3058 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score312.4
Seed ortholog evalue1.7e-82
Seed eggNOG ortholog2880.D7G9H4
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0012505,GO:0015693,GO:0016020,GO:0030001,GO:0031410,GO:0031982,GO:0043226,GO:0043227,GO:0043229,GO:0044424,GO:0044444,GO:0044464,GO:0051179,GO:0051234,GO:0070838,GO:0071944,GO:0072511,GO:0097708
EggNOG free text desc.magnesium ion transmembrane transporter activity
EggNOG OGsKOG2922@1,KOG2922@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons4
Model size654
Cds size654
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72528.14921.1prot_H-elongata_contig72528.14921.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig72528 826..3058 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931126.700293-CDS-H-elongata_contig72528:825..9571622931126.700293-CDS-H-elongata_contig72528:825..957Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72528 826..957 +
1691679708.9467666-CDS-H-elongata_contig72528:825..9571691679708.9467666-CDS-H-elongata_contig72528:825..957Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72528 826..957 +
1622931126.713476-CDS-H-elongata_contig72528:1352..14481622931126.713476-CDS-H-elongata_contig72528:1352..1448Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72528 1353..1448 +
1691679708.958547-CDS-H-elongata_contig72528:1352..14481691679708.958547-CDS-H-elongata_contig72528:1352..1448Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72528 1353..1448 +
1622931126.7446098-CDS-H-elongata_contig72528:2134..24071622931126.7446098-CDS-H-elongata_contig72528:2134..2407Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72528 2135..2407 +
1691679708.9682221-CDS-H-elongata_contig72528:2134..24071691679708.9682221-CDS-H-elongata_contig72528:2134..2407Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72528 2135..2407 +
1622931127.1126628-CDS-H-elongata_contig72528:2905..30581622931127.1126628-CDS-H-elongata_contig72528:2905..3058Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72528 2906..3058 +
1691679708.9776356-CDS-H-elongata_contig72528:2905..30581691679708.9776356-CDS-H-elongata_contig72528:2905..3058Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72528 2906..3058 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig72528.14921.1

>prot_H-elongata_contig72528.14921.1 ID=prot_H-elongata_contig72528.14921.1|Name=mRNA_H-elongata_contig72528.14921.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=218bp
LWNAGALLLVVGSLVNFGSFGFAPQSLLASLGSVQFVSNIVFGKMILREV
VTRRILIGTFTIILGNTITLCFGPHQDGNFDAQQLIALYDLEYNALLLLE
ILLALSLHTLYKTYKRSRDMGSPRRYSDVVMPLAYAACSAIVGTQSVIQA
KCLSELLKMTFEGENQMASPLPYAVAAVWLGTTIFWLVRMNRALAMFQGL
FIIPALQVTDPAPPPSP*
back to top

mRNA from alignment at H-elongata_contig72528:826..3058+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig72528.14921.1 ID=mRNA_H-elongata_contig72528.14921.1|Name=mRNA_H-elongata_contig72528.14921.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2233bp|location=Sequence derived from alignment at H-elongata_contig72528:826..3058+ (Himanthalia elongata Himel1 dioecious)
CTATGGAATGCGGGTGCGTTGCTGCTTGTGGTGGGGAGCTTGGTGAACTT CGGCTCCTTTGGTTTCGCGCCTCAGAGCCTGCTGGCGAGCCTCGGTTCCG TGCAGTTTGTCTCGAACATCGTGTTCGGAAAGGTGGGTCGTGAGCCCACC CGCCACCGCGGCGATCGTTCTTACGGAGTATATAGGGTTTGCGTGATGTT TTGATCCGATACCACGGTAGAGGCAGGAGGTTTTCGCCAAAGGCCAACCC GACCTAATATTCCTCCATAAAAAGAGTCGATTCTAGGTCAGAGTGCCGTA CGACCGTTATGGGCCGCGGCAGGCCAACAATCACCAATTCGACCGAGTTT TATTCGCGAGTCGTGGGAGCGGAAGCAGTCGAGGCAATGGCAAAACAATG TCGATAGACACGCCTTCCACATCCTTGGAAAATCTCGTGGTGAGGCCGTC AAATGATTTTTTAAATCCCCCTGTCTCTCTCTCTCTCTTTCCCTTCCTCC CTCTCGTGCGCCATTGGTGGTCTCCAGATGATCCTGCGCGAGGTAGTGAC AAGGCGAATCCTCATCGGCACCTTCACGATAATCTTGGGCAACACCATCA CGCTGTGCTTCGGCCCTCACCAGGTAGGCGCGCGTTTGTGAAGTGGGTGG ACGGCCGTGTCCGCTAATGCTCTCCTGTCGATCTGTTCGCTAATGCGACA CACTAGAGACGGTACCGCACGAAGTGGAAGATTAATAAGGTCCCGCGCTT CGATGCTTGATAAGGAGAGAGATGCGGGAGATTAGGTGGTGACCATCGGT TGTACCGAAGATCCGAAGATCCGGGAGCGTAAGAACCCGCTAATGTGAAG AAGCGCTAGAGGTACGTATCGTCATCGACCTGCTCCTCGATATACATCCA GAAGAACCCATCGACTTGTGCTCTATTGGTCGATTTCCTCGGGCTGTGCG CAAGCCACCTGCTGCAGGAGTTTTGCCTCGGACAACACCTCAGAAACCAG CCCCCGGGTGATGGTGAATTTTAGTGTATCTTTGTTCGCGTCCACTCCTC ATCGCAGACATAGTTGGCATGTAAGAGCACCCCTTCATCCCACCAGAGCT TATTTCACTAGTAGTATATAATGTTTGGAAAAAATGGGCATTGGCCTCCC TAGACCGGGGCTTGTTACAAACGAGGGGCAGCCCGCACGATACGCGAGGC GTTCCATTGAGATGTTACGTCTCAGAAAGGGGCGTACAAAACGGTTCACA CCGCCCTATCCCGGGTTGGCTTGGAACCTCCCCCCCCTCCCCCGCTCTCG CCCGCGCAGGACGGAAACTTCGACGCGCAGCAGCTGATAGCCCTCTACGA CCTGGAGTACAACGCGCTGCTGCTGCTGGAGATTTTGCTCGCGCTCAGCT TGCACACGTTGTACAAAACCTACAAGAGAAGCAGGGACATGGGATCTCCC AGGCGATACTCGGACGTCGTGATGCCCCTGGCGTACGCGGCGTGCTCGGC GATCGTGGGCACCCAGAGCGTGATCCAAGCCAAGTGCTTGAGCGAGCTCC TGAAGATGACCTTCGAGGGCGAGAATCAGATGGTAAGAAAGGAAAGGGAA CCGGTGGCGCCTTTGCTCCCCCGACCCCCACTGGGCGCGTGTAATTCCCC TGGTCGTGCACATCGTGGTCTCCAAACACAACAAATGCTGTGACATCAGT TACTGTGGCATCATCTGTTGTGACATCAACCACTGTGGCATCAGCTGTTC ACGATGGACACCCCAGCATTCAAGGCTTTTTTTGTTTACCACTTTTTAAT GTCAATCCTTGTCTTCTCGCTGGTTAAAAAAACAGTTCGCTTCACGAAAG GTTATGGTTTCGCGTTGATGCTGAGTTGGATCTAACCTCTGCTGCAGCGA TCTGTAGATACGAAATAGAAACGTTTCGACAAGAGTAACTCTTACCCTGG CCTTCGAACAGTGTCCTATCGTCCTATCTACTGATGCTGCTGCTGCTTTT TGCGTTCGTAACGACAAAAAGAGAACGAAACGAAACTAAAACAAAACGAA ACGAAACGAAACAAAACCTGAACGAAACAGGCATCTCCGTTACCGTACGC GGTAGCCGCGGTATGGCTCGGCACGACGATATTCTGGCTCGTGCGCATGA ACCGAGCGCTGGCGATGTTTCAGGGTCTCTTCATCATCCCGGCCCTACAG GTGACCGACCCCGCCCCCCCTCCTTCCCCTTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig72528:826..3058+

>mRNA_H-elongata_contig72528.14921.1 ID=mRNA_H-elongata_contig72528.14921.1|Name=mRNA_H-elongata_contig72528.14921.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1308bp|location=Sequence derived from alignment at H-elongata_contig72528:826..3058+ (Himanthalia elongata Himel1 dioecious)
CTATGGAATGCGGGTGCGTTGCTGCTTGTGGTGGGGAGCTTGGTGAACTT
CGGCTCCTTTGGTTTCGCGCCTCAGAGCCTGCTGGCGAGCCTCGGTTCCG
TGCAGTTTGTCTCGAACATCGTGTTCGGAAAGCTATGGAATGCGGGTGCG
TTGCTGCTTGTGGTGGGGAGCTTGGTGAACTTCGGCTCCTTTGGTTTCGC
GCCTCAGAGCCTGCTGGCGAGCCTCGGTTCCGTGCAGTTTGTCTCGAACA
TCGTGTTCGGAAAGATGATCCTGCGCGAGGTAGTGACAAGGCGAATCCTC
ATCGGCACCTTCACGATAATCTTGGGCAACACCATCACGCTGTGCTTCGG
CCCTCACCAGATGATCCTGCGCGAGGTAGTGACAAGGCGAATCCTCATCG
GCACCTTCACGATAATCTTGGGCAACACCATCACGCTGTGCTTCGGCCCT
CACCAGGACGGAAACTTCGACGCGCAGCAGCTGATAGCCCTCTACGACCT
GGAGTACAACGCGCTGCTGCTGCTGGAGATTTTGCTCGCGCTCAGCTTGC
ACACGTTGTACAAAACCTACAAGAGAAGCAGGGACATGGGATCTCCCAGG
CGATACTCGGACGTCGTGATGCCCCTGGCGTACGCGGCGTGCTCGGCGAT
CGTGGGCACCCAGAGCGTGATCCAAGCCAAGTGCTTGAGCGAGCTCCTGA
AGATGACCTTCGAGGGCGAGAATCAGATGGACGGAAACTTCGACGCGCAG
CAGCTGATAGCCCTCTACGACCTGGAGTACAACGCGCTGCTGCTGCTGGA
GATTTTGCTCGCGCTCAGCTTGCACACGTTGTACAAAACCTACAAGAGAA
GCAGGGACATGGGATCTCCCAGGCGATACTCGGACGTCGTGATGCCCCTG
GCGTACGCGGCGTGCTCGGCGATCGTGGGCACCCAGAGCGTGATCCAAGC
CAAGTGCTTGAGCGAGCTCCTGAAGATGACCTTCGAGGGCGAGAATCAGA
TGGCATCTCCGTTACCGTACGCGGTAGCCGCGGTATGGCTCGGCACGACG
ATATTCTGGCTCGTGCGCATGAACCGAGCGCTGGCGATGTTTCAGGGTCT
CTTCATCATCCCGGCCCTACAGGTGACCGACCCCGCCCCCCCTCCTTCCC
CTTAAGCATCTCCGTTACCGTACGCGGTAGCCGCGGTATGGCTCGGCACG
ACGATATTCTGGCTCGTGCGCATGAACCGAGCGCTGGCGATGTTTCAGGG
TCTCTTCATCATCCCGGCCCTACAGGTGACCGACCCCGCCCCCCCTCCTT
CCCCTTAA
back to top