mRNA_H-elongata_contig7252.14919.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7252.14919.1
Unique NamemRNA_H-elongata_contig7252.14919.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7252.14919.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7252contigH-elongata_contig7252:4883..6163 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size348
Cds size348
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7252.14919.1prot_H-elongata_contig7252.14919.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7252 4883..6163 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931126.5039577-CDS-H-elongata_contig7252:4882..49331622931126.5039577-CDS-H-elongata_contig7252:4882..4933Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7252 4883..4933 +
1691679708.8220544-CDS-H-elongata_contig7252:4882..49331691679708.8220544-CDS-H-elongata_contig7252:4882..4933Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7252 4883..4933 +
1622931126.5205123-CDS-H-elongata_contig7252:5065..51821622931126.5205123-CDS-H-elongata_contig7252:5065..5182Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7252 5066..5182 +
1691679708.83207-CDS-H-elongata_contig7252:5065..51821691679708.83207-CDS-H-elongata_contig7252:5065..5182Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7252 5066..5182 +
1622931126.5351996-CDS-H-elongata_contig7252:5472..56011622931126.5351996-CDS-H-elongata_contig7252:5472..5601Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7252 5473..5601 +
1691679708.844415-CDS-H-elongata_contig7252:5472..56011691679708.844415-CDS-H-elongata_contig7252:5472..5601Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7252 5473..5601 +
1622931126.552331-CDS-H-elongata_contig7252:6112..61631622931126.552331-CDS-H-elongata_contig7252:6112..6163Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7252 6113..6163 +
1691679708.8648107-CDS-H-elongata_contig7252:6112..61631691679708.8648107-CDS-H-elongata_contig7252:6112..6163Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7252 6113..6163 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7252.14919.1

>prot_H-elongata_contig7252.14919.1 ID=prot_H-elongata_contig7252.14919.1|Name=mRNA_H-elongata_contig7252.14919.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=116bp
MVSTILEAMREATEWPRGIERALENRTSKKSLLLSAAHGGNKAVFDAVMQ
HELWKQLLDMFLKDREYGRAALADAAINGGPASFRAVVEILDQPLDDEQA
IIMLRNHLFDGNSDYD
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mRNA from alignment at H-elongata_contig7252:4883..6163+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7252.14919.1 ID=mRNA_H-elongata_contig7252.14919.1|Name=mRNA_H-elongata_contig7252.14919.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1281bp|location=Sequence derived from alignment at H-elongata_contig7252:4883..6163+ (Himanthalia elongata Himel1 dioecious)
ATGGTGTCGACAATCTTGGAGGCCATGCGTGAAGCTACTGAGTGGCCTCG
GGTGAGTGGACAGCGAAACCTTTAAAATGCTCTTGTTGATCGCTTTTCCT
TATCGAGAATGATGTCGCTTTATAAGTACTTTTCTTTCGGACAAAACTCA
TTTCCCTCTACCTGGCTACGTAATATGGAGCAGGGAATCGAACGTGCCCT
GGAGAATCGTACGTCGAAGAAGTCGCTCCTGCTTTCAGCGGCCCACGGAG
GAAACAAGGCGGTATTCGACGCGGTTATGCAGCACGAGCTGTGGAAGCAA
GTGAGCGCGTGTAGTGTCGATGATTTGCGTGGCCAGCGATCGGACGGAGC
AGGGATCCAGTGCTAACATCCCGCGTCTACCGGCGTTTATCGCAACAATC
TGTTTTCTGCTAGTCTTTACGAGGCATCAGGTGGACCGCACTGTAGCTTG
CTCACATTTTGGAGTAATGTAAATGTATTTACGTTAGGGCGAGTAATCTT
TCGACGTCTCATAGTCACAAACCCATGACGCCGGCTACCTCTCGTCCAAT
ACTGTGGCGCTACACTGGACAACGTTTTCGACGAGTCAAGCTCCTCGATA
TGTTCTTGAAAGACCGCGAATATGGTCGAGCGGCGCTAGCGGATGCTGCC
ATCAACGGAGGGCCGGCCAGTTTCAGGGCAGTGGTAGAGATATTGGACCA
GCCGCTGGACGACGAACAGGTTAGAGAGGGCTTTACTCTCCATCTGCTAC
ACAATGGGTGCAGTGGGATTTTTAGGCGGGGGTTCCTCACATTAGCTCTT
TTCTGAAACATCTAGAGCCCGTGGCACAAAAGTGCTGAAGAGGAAGGTAA
AAAAACACGAAAAGTATAAAATGAAAGGGGCACATAAGACCGAAAGAGGT
ACATCTAACTTCCTACTAAGTTGGGGTGTGTTCAACCTGAGCAACACGTC
CACGGTATCCATTCGGCTACAGCCCCCGCGTTCCCACAACCACCCAAATT
ACAGTAGTGCTGTCTGGAGTGCTGCCCGCACCGTACCAAAGCACAGTAGT
CATGGAAAATGAAAGAACACTCTATGGCACACGGGTTTGCCTACTAGACT
TGTAACTGGAGCCCGCGCATGGCACAGAAATATCACCGTTACCATTCACT
TGAGATCGCTTTCCTCAAAACGTATATGCTTTCATTTTGTCGAAACATCC
GTGTTCCGCGATTGTCTTCGTAAATGTCAGGCGATAATCATGCTGAGGAA
CCACTTGTTTGACGGCAACAGTGATTACGAC
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Coding sequence (CDS) from alignment at H-elongata_contig7252:4883..6163+

>mRNA_H-elongata_contig7252.14919.1 ID=mRNA_H-elongata_contig7252.14919.1|Name=mRNA_H-elongata_contig7252.14919.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=696bp|location=Sequence derived from alignment at H-elongata_contig7252:4883..6163+ (Himanthalia elongata Himel1 dioecious)
ATGGTGTCGACAATCTTGGAGGCCATGCGTGAAGCTACTGAGTGGCCTCG
GATGGTGTCGACAATCTTGGAGGCCATGCGTGAAGCTACTGAGTGGCCTC
GGGGAATCGAACGTGCCCTGGAGAATCGTACGTCGAAGAAGTCGCTCCTG
CTTTCAGCGGCCCACGGAGGAAACAAGGCGGTATTCGACGCGGTTATGCA
GCACGAGCTGTGGAAGCAAGGAATCGAACGTGCCCTGGAGAATCGTACGT
CGAAGAAGTCGCTCCTGCTTTCAGCGGCCCACGGAGGAAACAAGGCGGTA
TTCGACGCGGTTATGCAGCACGAGCTGTGGAAGCAACTCCTCGATATGTT
CTTGAAAGACCGCGAATATGGTCGAGCGGCGCTAGCGGATGCTGCCATCA
ACGGAGGGCCGGCCAGTTTCAGGGCAGTGGTAGAGATATTGGACCAGCCG
CTGGACGACGAACAGCTCCTCGATATGTTCTTGAAAGACCGCGAATATGG
TCGAGCGGCGCTAGCGGATGCTGCCATCAACGGAGGGCCGGCCAGTTTCA
GGGCAGTGGTAGAGATATTGGACCAGCCGCTGGACGACGAACAGGCGATA
ATCATGCTGAGGAACCACTTGTTTGACGGCAACAGTGATTACGACGCGAT
AATCATGCTGAGGAACCACTTGTTTGACGGCAACAGTGATTACGAC
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