mRNA_H-elongata_contig7252.14918.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7252.14918.1
Unique NamemRNA_H-elongata_contig7252.14918.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7252.14918.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7252contigH-elongata_contig7252:3479..3998 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size260
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931126.4417405-CDS-H-elongata_contig7252:3478..35721622931126.4417405-CDS-H-elongata_contig7252:3478..3572Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7252 3479..3572 +
1691679708.803809-CDS-H-elongata_contig7252:3478..35721691679708.803809-CDS-H-elongata_contig7252:3478..3572Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7252 3479..3572 +
1622931126.4644907-CDS-H-elongata_contig7252:3832..39961622931126.4644907-CDS-H-elongata_contig7252:3832..3996Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7252 3833..3996 +
1691679708.81293-CDS-H-elongata_contig7252:3832..39961691679708.81293-CDS-H-elongata_contig7252:3832..3996Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7252 3833..3996 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7252.14918.1prot_H-elongata_contig7252.14918.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7252 3479..3996 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7252.14918.1

>prot_H-elongata_contig7252.14918.1 ID=prot_H-elongata_contig7252.14918.1|Name=mRNA_H-elongata_contig7252.14918.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
DWSTSSTRGWPDSIMTDDDCKQEVKSEGAVVYQRLVDVVQTKTPEEVRDI
FGVRIATMGRAQTFEQLTEVHQGLSVIMHTVKRGSV
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mRNA from alignment at H-elongata_contig7252:3479..3998+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7252.14918.1 ID=mRNA_H-elongata_contig7252.14918.1|Name=mRNA_H-elongata_contig7252.14918.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=520bp|location=Sequence derived from alignment at H-elongata_contig7252:3479..3998+ (Himanthalia elongata Himel1 dioecious)
GACTGGAGCACGTCAAGCACACGAGGTTGGCCGGACAGCATTATGACCGA
CGACGATTGTAAACAGGAGGTCAAGAGCGAGGGCGCTGTTGTATGTGAGT
AAAATCGTCAAAACGAAGCCAAGATGTGCGCAGTTAAGGAGCATATACGT
TTTCCCGTTTCCGTGCCTACGGATGGCTTCATTTCGACTGTTTGCTTACT
AAGCCAGGCGCCAGGCTATGCTCTCCGTTGGCTTTCTAGTTAAAGCCTGC
CAGTGAGCTAATGTAGTATGTAACATAAAGTAATGATACAATACTCTAGA
GAATTGTACCGTGAACACACACGAGCACATGAAACCTTGGTCCGCTCGCT
ACAGACCAGCGCCTGGTGGATGTGGTGCAGACGAAGACGCCGGAAGAAGT
GCGGGATATTTTCGGTGTTCGCATAGCAACGATGGGAAGGGCGCAAACGT
TCGAACAGCTCACGGAGGTTCACCAAGGGTTATCAGTGATCATGCACACC
GTCAAGAGGGGCTCGGTGCC
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Coding sequence (CDS) from alignment at H-elongata_contig7252:3479..3998+

>mRNA_H-elongata_contig7252.14918.1 ID=mRNA_H-elongata_contig7252.14918.1|Name=mRNA_H-elongata_contig7252.14918.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig7252:3479..3998+ (Himanthalia elongata Himel1 dioecious)
GACTGGAGCACGTCAAGCACACGAGGTTGGCCGGACAGCATTATGACCGA
CGACGATTGTAAACAGGAGGTCAAGAGCGAGGGCGCTGTTGTATGACTGG
AGCACGTCAAGCACACGAGGTTGGCCGGACAGCATTATGACCGACGACGA
TTGTAAACAGGAGGTCAAGAGCGAGGGCGCTGTTGTATACCAGCGCCTGG
TGGATGTGGTGCAGACGAAGACGCCGGAAGAAGTGCGGGATATTTTCGGT
GTTCGCATAGCAACGATGGGAAGGGCGCAAACGTTCGAACAGCTCACGGA
GGTTCACCAAGGGTTATCAGTGATCATGCACACCGTCAAGAGGGGCTCGG
TGACCAGCGCCTGGTGGATGTGGTGCAGACGAAGACGCCGGAAGAAGTGC
GGGATATTTTCGGTGTTCGCATAGCAACGATGGGAAGGGCGCAAACGTTC
GAACAGCTCACGGAGGTTCACCAAGGGTTATCAGTGATCATGCACACCGT
CAAGAGGGGCTCGGTG
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