mRNA_H-elongata_contig72468.14914.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig72468.14914.1
Unique NamemRNA_H-elongata_contig72468.14914.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig72468.14914.1 vs. uniprot
Match: D7G615_ECTSI (Alternative oxidase isoform A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G615_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 4.800e-6
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 3 
Query:    3 DMHKDFKQDAVNPFSIQAKVNEYAESGGTNTPVVASITGGEID 131
            DMH++FKQDAVNPFSI A V +YA++G T  P VA I  G+ D
Sbjct:  346 DMHQEFKQDAVNPFSIHASVTKYADAGVT-PPTVADIANGDAD 387
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72468.14914.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G615_ECTSI4.800e-660.47Alternative oxidase isoform A n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72468contigH-elongata_contig72468:1411..2198 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size262
Cds size168
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72468.14914.1prot_H-elongata_contig72468.14914.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig72468 1416..2109 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931126.0768392-UTR-H-elongata_contig72468:1410..14151622931126.0768392-UTR-H-elongata_contig72468:1410..1415Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig72468 1411..1415 +
1691679708.6921787-UTR-H-elongata_contig72468:1410..14151691679708.6921787-UTR-H-elongata_contig72468:1410..1415Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig72468 1411..1415 +
1622931126.2038405-UTR-H-elongata_contig72468:2109..21981622931126.2038405-UTR-H-elongata_contig72468:2109..2198Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig72468 2110..2198 +
1691679708.7281744-UTR-H-elongata_contig72468:2109..21981691679708.7281744-UTR-H-elongata_contig72468:2109..2198Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig72468 2110..2198 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931126.1590626-CDS-H-elongata_contig72468:1415..14421622931126.1590626-CDS-H-elongata_contig72468:1415..1442Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72468 1416..1442 +
1691679708.7033732-CDS-H-elongata_contig72468:1415..14421691679708.7033732-CDS-H-elongata_contig72468:1415..1442Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72468 1416..1442 +
1622931126.186284-CDS-H-elongata_contig72468:1968..21091622931126.186284-CDS-H-elongata_contig72468:1968..2109Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72468 1969..2109 +
1691679708.7160938-CDS-H-elongata_contig72468:1968..21091691679708.7160938-CDS-H-elongata_contig72468:1968..2109Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72468 1969..2109 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig72468.14914.1

>prot_H-elongata_contig72468.14914.1 ID=prot_H-elongata_contig72468.14914.1|Name=mRNA_H-elongata_contig72468.14914.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=56bp
MHKDFKQDAVNPFSIQAKVNEYAESGGTNTPVVASITGGEIDPTGPMVAD
KKEKA*
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mRNA from alignment at H-elongata_contig72468:1411..2198+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig72468.14914.1 ID=mRNA_H-elongata_contig72468.14914.1|Name=mRNA_H-elongata_contig72468.14914.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=788bp|location=Sequence derived from alignment at H-elongata_contig72468:1411..2198+ (Himanthalia elongata Himel1 dioecious)
CGGACATGCACAAGGACTTCAAGCAGGATGCGGTAAGGCTCCGCTCCGTC
GAACGGTATCGTTGAAGGTCCCCTGGTCATAAGAGTGATATTTATTTCGT
TTCACGCCTTGACTGAATACCGGTGAAGGAAACAATACTTTGAGTAAGAG
GGAAAATACCACGGGTCTTAGCTTTTGGCTGCTACAAGTAACACCGTGTC
TTCCGTCGAGACATCGTTCGTGGGTAGGGTCGTGCGTTGGTCTAGAATGA
TGGAATCGCGTGTAGATCAATCAATCACAGTATGCAGATTTGAGATACCA
AGGGACACCAGCGTTAGTGTTGCTCCCGCAAAATACGCTAGTTAGAGAAG
AGTTACGTTTTCTCCGGAGCGAGCCGGACATGCAAGGTGATCGAGTACAT
ACCAACACGTCGACGTACTTGAAGAAGCACTCGTTACTCTGCAGCCCATC
ACGAGCAGGTTGCCTTCGCCAAGCCCCTCTTCCTTCGCCCCAATCCGGAC
CACGCCGAAATGTCTCGCCTTGACCTGTACGCATACGACTGTACTTTGCT
TGCCACAGGTCAACCCCTTCAGCATTCAGGCGAAGGTCAACGAATACGCA
GAGTCGGGAGGCACGAACACGCCAGTCGTGGCCAGCATCACCGGCGGTGA
AATTGATCCCACCGGCCCCATGGTGGCGGACAAGAAGGAAAAGGCCTAGG
AGTCATTCGGAATAGAAACGAAGCCCCACGAGGTCACAAGTGCATTGTAG
AAAAATAGGAATACACACAGTTCCCACACGAGCGAGGC
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Coding sequence (CDS) from alignment at H-elongata_contig72468:1411..2198+

>mRNA_H-elongata_contig72468.14914.1 ID=mRNA_H-elongata_contig72468.14914.1|Name=mRNA_H-elongata_contig72468.14914.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=336bp|location=Sequence derived from alignment at H-elongata_contig72468:1411..2198+ (Himanthalia elongata Himel1 dioecious)
ATGCACAAGGACTTCAAGCAGGATGCGATGCACAAGGACTTCAAGCAGGA
TGCGGTCAACCCCTTCAGCATTCAGGCGAAGGTCAACGAATACGCAGAGT
CGGGAGGCACGAACACGCCAGTCGTGGCCAGCATCACCGGCGGTGAAATT
GATCCCACCGGCCCCATGGTGGCGGACAAGAAGGAAAAGGCCTAGGTCAA
CCCCTTCAGCATTCAGGCGAAGGTCAACGAATACGCAGAGTCGGGAGGCA
CGAACACGCCAGTCGTGGCCAGCATCACCGGCGGTGAAATTGATCCCACC
GGCCCCATGGTGGCGGACAAGAAGGAAAAGGCCTAG
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