mRNA_H-elongata_contig72460.14913.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig72460.14913.1
Unique NamemRNA_H-elongata_contig72460.14913.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72460.14913.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72460contigH-elongata_contig72460:2675..3018 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size345
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931126.0097213-CDS-H-elongata_contig72460:2674..29861622931126.0097213-CDS-H-elongata_contig72460:2674..2986Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72460 2675..2986 +
1691679708.671759-CDS-H-elongata_contig72460:2674..29861691679708.671759-CDS-H-elongata_contig72460:2674..2986Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72460 2675..2986 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931126.0251331-UTR-H-elongata_contig72460:2986..30181622931126.0251331-UTR-H-elongata_contig72460:2986..3018Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig72460 2987..3018 +
1691679708.6820924-UTR-H-elongata_contig72460:2986..30181691679708.6820924-UTR-H-elongata_contig72460:2986..3018Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig72460 2987..3018 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72460.14913.1prot_H-elongata_contig72460.14913.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig72460 2675..2986 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig72460.14913.1

>prot_H-elongata_contig72460.14913.1 ID=prot_H-elongata_contig72460.14913.1|Name=mRNA_H-elongata_contig72460.14913.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
AVEHSLSTREAPIQEGPLLQAVDLLNHASSQQQQVAAAPASLDAARFSNS
SACCFPQSKSAASSAAFFFRTFLFFGRNHFCGSHRPQSPTARRRSLILQR
ERV*
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mRNA from alignment at H-elongata_contig72460:2675..3018+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig72460.14913.1 ID=mRNA_H-elongata_contig72460.14913.1|Name=mRNA_H-elongata_contig72460.14913.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=344bp|location=Sequence derived from alignment at H-elongata_contig72460:2675..3018+ (Himanthalia elongata Himel1 dioecious)
GCTGTTGAGCACTCCTTATCTACCCGTGAAGCTCCAATTCAAGAGGGTCC
GTTGCTACAAGCTGTCGATCTGCTGAACCACGCTTCGTCCCAGCAGCAGC
AGGTAGCAGCCGCACCAGCAAGCTTGGATGCTGCTCGTTTTTCGAACTCT
TCTGCATGCTGTTTCCCGCAATCGAAAAGCGCAGCCTCATCTGCCGCTTT
CTTCTTTAGAACCTTTTTATTTTTCGGTCGCAATCATTTCTGTGGCAGCC
ACCGCCCACAAAGTCCGACGGCTCGAAGAAGATCGCTCATTTTACAGCGG
GAACGTGTCTGACAACCACCGAAGGGATGTCTTCTGTATCTAAA
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Coding sequence (CDS) from alignment at H-elongata_contig72460:2675..3018+

>mRNA_H-elongata_contig72460.14913.1 ID=mRNA_H-elongata_contig72460.14913.1|Name=mRNA_H-elongata_contig72460.14913.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig72460:2675..3018+ (Himanthalia elongata Himel1 dioecious)
GCTGTTGAGCACTCCTTATCTACCCGTGAAGCTCCAATTCAAGAGGGTCC
GTTGCTACAAGCTGTCGATCTGCTGAACCACGCTTCGTCCCAGCAGCAGC
AGGTAGCAGCCGCACCAGCAAGCTTGGATGCTGCTCGTTTTTCGAACTCT
TCTGCATGCTGTTTCCCGCAATCGAAAAGCGCAGCCTCATCTGCCGCTTT
CTTCTTTAGAACCTTTTTATTTTTCGGTCGCAATCATTTCTGTGGCAGCC
ACCGCCCACAAAGTCCGACGGCTCGAAGAAGATCGCTCATTTTACAGCGG
GAACGTGTCTGAGCTGTTGAGCACTCCTTATCTACCCGTGAAGCTCCAAT
TCAAGAGGGTCCGTTGCTACAAGCTGTCGATCTGCTGAACCACGCTTCGT
CCCAGCAGCAGCAGGTAGCAGCCGCACCAGCAAGCTTGGATGCTGCTCGT
TTTTCGAACTCTTCTGCATGCTGTTTCCCGCAATCGAAAAGCGCAGCCTC
ATCTGCCGCTTTCTTCTTTAGAACCTTTTTATTTTTCGGTCGCAATCATT
TCTGTGGCAGCCACCGCCCACAAAGTCCGACGGCTCGAAGAAGATCGCTC
ATTTTACAGCGGGAACGTGTCTGA
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