mRNA_H-elongata_contig72420.14910.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig72420.14910.1
Unique NamemRNA_H-elongata_contig72420.14910.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72420.14910.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72420contigH-elongata_contig72420:458..2921 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2455
Cds size1680
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72420.14910.1prot_H-elongata_contig72420.14910.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig72420 499..2187 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931125.69554-UTR-H-elongata_contig72420:457..4981622931125.69554-UTR-H-elongata_contig72420:457..498Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig72420 458..498 +
1691679708.5536664-UTR-H-elongata_contig72420:457..4981691679708.5536664-UTR-H-elongata_contig72420:457..498Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig72420 458..498 +
1622931125.8039563-UTR-H-elongata_contig72420:2187..29211622931125.8039563-UTR-H-elongata_contig72420:2187..2921Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig72420 2188..2921 +
1691679708.5922368-UTR-H-elongata_contig72420:2187..29211691679708.5922368-UTR-H-elongata_contig72420:2187..2921Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig72420 2188..2921 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931125.7159255-CDS-H-elongata_contig72420:498..6351622931125.7159255-CDS-H-elongata_contig72420:498..635Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72420 499..635 +
1691679708.5638103-CDS-H-elongata_contig72420:498..6351691679708.5638103-CDS-H-elongata_contig72420:498..635Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72420 499..635 +
1622931125.7313867-CDS-H-elongata_contig72420:644..21871622931125.7313867-CDS-H-elongata_contig72420:644..2187Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72420 645..2187 +
1691679708.5739596-CDS-H-elongata_contig72420:644..21871691679708.5739596-CDS-H-elongata_contig72420:644..2187Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72420 645..2187 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig72420.14910.1

>prot_H-elongata_contig72420.14910.1 ID=prot_H-elongata_contig72420.14910.1|Name=mRNA_H-elongata_contig72420.14910.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=560bp
MSDSATKRCASNGCFKRPSYGVAGSNEANYCAVHVLEGMIDVMIIRDGCL
RYPSYGVIGSKKVEYCAMHALDGMINVVSKRCCGDGCFKQPRYGVAGSKK
AEYCAVHSLEGMIIVQGKMCVKDRCYKQPSYGVAGSKSPEYCAVHALEGM
INVRHKRCAKDGCVKRSSYGVSGTKKVEYCALHALKGMVKVYNKGCASDG
CSKCPTYGVAGTKKAEYCVVHALEGMIDVMRIRCSSDRCFKYPSYGVAGS
KKAQYCAVHALDGMINVVSKRCAGDGCLKQPRYGVAGSKNAEYCAVHSLA
GMINVQGKMCAKDGCYKQPSYGVAGSKSPEYCAVHALKGMINVRCKICAK
DGCFKRSSYGVFGTKKAEYCAVHALEGMIDVIRIHCSSDGCLKYPSYGEA
GSSKAEYCAVHALEGMINVVSRRCANDGCFKQPRYGVTGSKKAEYCAVHA
LKGMLRVHNKGCASDGCIKRPSHGVVGSKTPEYCALHSLEGMKDVSANRC
DGDNSAARSQARTRKRMPEATAREVSVLDGESTTKFKHTCYNAVSDAKRV
KIEVSLSIS*
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mRNA from alignment at H-elongata_contig72420:458..2921+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig72420.14910.1 ID=mRNA_H-elongata_contig72420.14910.1|Name=mRNA_H-elongata_contig72420.14910.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2464bp|location=Sequence derived from alignment at H-elongata_contig72420:458..2921+ (Himanthalia elongata Himel1 dioecious)
AGATCATTGTGAACACTTCTACGGTGCATACGTGAAGAGGGATGAGTGAC
TCTGCGACCAAGAGGTGTGCTAGCAATGGATGCTTTAAGCGACCGAGCTA
TGGCGTGGCGGGCAGCAACGAAGCGAACTACTGCGCGGTGCATGTTTTGG
AAGGGATGATCGACGTTATGATAATACGGTGTTCTAGTGATGGATGTCTT
AGGTACCCGAGCTATGGCGTGATCGGCAGCAAAAAGGTGGAATACTGCGC
GATGCATGCTTTAGATGGGATGATCAACGTTGTGAGCAAGAGGTGTTGTG
GGGATGGATGTTTTAAGCAACCGAGGTATGGTGTAGCTGGCAGCAAGAAA
GCGGAATACTGCGCGGTGCATTCCTTAGAGGGGATGATCATTGTTCAAGG
GAAGATGTGTGTTAAGGATCGATGCTATAAGCAACCGAGTTATGGCGTGG
CCGGCAGCAAGAGTCCGGAATACTGCGCGGTGCATGCTTTGGAAGGAATG
ATTAACGTTCGACACAAGAGATGTGCTAAGGATGGATGCGTTAAACGATC
GAGTTATGGCGTGTCCGGAACCAAGAAAGTGGAATACTGTGCTCTGCATG
CTTTAAAAGGGATGGTCAAAGTGTACAACAAGGGGTGTGCTAGCGACGGA
TGCTCTAAATGTCCGACCTACGGAGTCGCCGGCACCAAGAAAGCGGAATA
CTGTGTAGTGCATGCTTTGGAAGGGATGATCGACGTTATGAGAATACGGT
GCTCTAGTGATCGATGTTTTAAGTACCCGAGCTATGGCGTGGCCGGCAGC
AAAAAGGCGCAATACTGCGCGGTGCATGCTTTAGATGGGATGATCAACGT
TGTGAGCAAGAGGTGTGCTGGTGATGGATGTTTGAAGCAACCGAGGTATG
GCGTAGCTGGCAGCAAGAACGCGGAATACTGTGCGGTGCATTCCTTAGCA
GGGATGATCAATGTTCAAGGGAAGATGTGTGCTAAGGACGGATGCTATAA
GCAACCGAGTTATGGCGTGGCCGGCAGCAAGAGTCCGGAATACTGCGCGG
TGCATGCTTTGAAAGGGATGATTAACGTTCGATGTAAGATATGTGCTAAG
GATGGATGCTTTAAACGATCGAGTTATGGCGTGTTCGGAACCAAGAAAGC
GGAATACTGTGCGGTGCATGCTTTGGAAGGGATGATCGACGTTATAAGAA
TACATTGTTCTAGTGATGGATGTCTTAAGTACCCGAGTTATGGCGAGGCC
GGCAGCAGTAAGGCGGAATACTGCGCGGTGCATGCTTTAGAGGGGATGAT
CAACGTTGTGAGCAGGAGGTGTGCTAATGATGGATGCTTTAAGCAACCGA
GGTATGGCGTGACTGGCAGCAAGAAAGCGGAATACTGCGCGGTGCATGCT
TTGAAAGGGATGCTCAGAGTTCACAACAAGGGTTGTGCTAGCGACGGATG
CATTAAGCGTCCGAGTCATGGTGTAGTCGGCAGCAAAACACCGGAGTACT
GCGCGTTGCATTCTTTGGAAGGGATGAAGGATGTTTCGGCCAATAGGTGT
GATGGTGATAATTCGGCTGCACGAAGTCAGGCTAGGACCAGGAAGCGAAT
GCCCGAGGCTACTGCTCGAGAAGTATCTGTTTTAGACGGAGAAAGCACGA
CTAAGTTTAAGCACACCTGTTACAATGCAGTATCAGATGCAAAAAGAGTG
AAAATTGAGGTATCCCTATCTATATCCTAGTATTTAAATTCTAAGTTAAA
AGTTGCGAAGAATCTACTGTAGACGATATGGGGTTTTGGCGCTCCGAGGC
TATCATACCTCCATAGTTGCTTCAGTTAGGATTTTGCAACGTGCAGTGGA
CAGGGTGGTTTGTTTGTTTCACCTGGTAAAAGGTAAAAAGAAGCTGAAAT
GCCAACATTTGTTGCCCTGTACTTGATATATTTTTATCGTACGCGTAAAG
CTCAGTTTGTAACTTCATACGAGCGCAGAGGTTTCTCCTGCTCGAGCCTG
TACGTGCAAACAAGCTGCAACGGGCACAAACACTTGCACGTATAAACTTT
TTCATCATCACTGCATCCTTCTTTTCTTCTCTTGATTTCCGGTAAAATGT
GTTTGGAATGCACGGTAGAGTCCGCCCCCTTCCCAGATAATGTCTTTTCT
ACAAAGGGGGGGCGTCAATAGTTTTGTCGGGGTTCACATTTGCGACTTTG
TTGTGGCTTGCTCTCGGTCTTTTTATCACTATGTATTCGGTGATCGGCGA
TTGGCAAGCCACCACACTGTCTTAGTGGATTGTTCTCGTTTTCTTCAATA
TATTTTCGAGGATGGGTGATATGCAATCATCATCCCCTGTCTCCGACTTG
GAACTATTTATCCTACGGCAGAACACATCCTCTTCCCTTGGATCAACGGT
GGCGTCGCAGTTTACGTCCACCACGCGTTCGTGCCTTCTTCTGTTTAGTT
TTCGTACTAATAAT
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Coding sequence (CDS) from alignment at H-elongata_contig72420:458..2921+

>mRNA_H-elongata_contig72420.14910.1 ID=mRNA_H-elongata_contig72420.14910.1|Name=mRNA_H-elongata_contig72420.14910.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3360bp|location=Sequence derived from alignment at H-elongata_contig72420:458..2921+ (Himanthalia elongata Himel1 dioecious)
ATGAGTGACTCTGCGACCAAGAGGTGTGCTAGCAATGGATGCTTTAAGCG
ACCGAGCTATGGCGTGGCGGGCAGCAACGAAGCGAACTACTGCGCGGTGC
ATGTTTTGGAAGGGATGATCGACGTTATGATAATACGATGAGTGACTCTG
CGACCAAGAGGTGTGCTAGCAATGGATGCTTTAAGCGACCGAGCTATGGC
GTGGCGGGCAGCAACGAAGCGAACTACTGCGCGGTGCATGTTTTGGAAGG
GATGATCGACGTTATGATAATACGTGATGGATGTCTTAGGTACCCGAGCT
ATGGCGTGATCGGCAGCAAAAAGGTGGAATACTGCGCGATGCATGCTTTA
GATGGGATGATCAACGTTGTGAGCAAGAGGTGTTGTGGGGATGGATGTTT
TAAGCAACCGAGGTATGGTGTAGCTGGCAGCAAGAAAGCGGAATACTGCG
CGGTGCATTCCTTAGAGGGGATGATCATTGTTCAAGGGAAGATGTGTGTT
AAGGATCGATGCTATAAGCAACCGAGTTATGGCGTGGCCGGCAGCAAGAG
TCCGGAATACTGCGCGGTGCATGCTTTGGAAGGAATGATTAACGTTCGAC
ACAAGAGATGTGCTAAGGATGGATGCGTTAAACGATCGAGTTATGGCGTG
TCCGGAACCAAGAAAGTGGAATACTGTGCTCTGCATGCTTTAAAAGGGAT
GGTCAAAGTGTACAACAAGGGGTGTGCTAGCGACGGATGCTCTAAATGTC
CGACCTACGGAGTCGCCGGCACCAAGAAAGCGGAATACTGTGTAGTGCAT
GCTTTGGAAGGGATGATCGACGTTATGAGAATACGGTGCTCTAGTGATCG
ATGTTTTAAGTACCCGAGCTATGGCGTGGCCGGCAGCAAAAAGGCGCAAT
ACTGCGCGGTGCATGCTTTAGATGGGATGATCAACGTTGTGAGCAAGAGG
TGTGCTGGTGATGGATGTTTGAAGCAACCGAGGTATGGCGTAGCTGGCAG
CAAGAACGCGGAATACTGTGCGGTGCATTCCTTAGCAGGGATGATCAATG
TTCAAGGGAAGATGTGTGCTAAGGACGGATGCTATAAGCAACCGAGTTAT
GGCGTGGCCGGCAGCAAGAGTCCGGAATACTGCGCGGTGCATGCTTTGAA
AGGGATGATTAACGTTCGATGTAAGATATGTGCTAAGGATGGATGCTTTA
AACGATCGAGTTATGGCGTGTTCGGAACCAAGAAAGCGGAATACTGTGCG
GTGCATGCTTTGGAAGGGATGATCGACGTTATAAGAATACATTGTTCTAG
TGATGGATGTCTTAAGTACCCGAGTTATGGCGAGGCCGGCAGCAGTAAGG
CGGAATACTGCGCGGTGCATGCTTTAGAGGGGATGATCAACGTTGTGAGC
AGGAGGTGTGCTAATGATGGATGCTTTAAGCAACCGAGGTATGGCGTGAC
TGGCAGCAAGAAAGCGGAATACTGCGCGGTGCATGCTTTGAAAGGGATGC
TCAGAGTTCACAACAAGGGTTGTGCTAGCGACGGATGCATTAAGCGTCCG
AGTCATGGTGTAGTCGGCAGCAAAACACCGGAGTACTGCGCGTTGCATTC
TTTGGAAGGGATGAAGGATGTTTCGGCCAATAGGTGTGATGGTGATAATT
CGGCTGCACGAAGTCAGGCTAGGACCAGGAAGCGAATGCCCGAGGCTACT
GCTCGAGAAGTATCTGTTTTAGACGGAGAAAGCACGACTAAGTTTAAGCA
CACCTGTTACAATGCAGTATCAGATGCAAAAAGAGTGAAAATTGAGGTAT
CCCTATCTATATCCTAGTGATGGATGTCTTAGGTACCCGAGCTATGGCGT
GATCGGCAGCAAAAAGGTGGAATACTGCGCGATGCATGCTTTAGATGGGA
TGATCAACGTTGTGAGCAAGAGGTGTTGTGGGGATGGATGTTTTAAGCAA
CCGAGGTATGGTGTAGCTGGCAGCAAGAAAGCGGAATACTGCGCGGTGCA
TTCCTTAGAGGGGATGATCATTGTTCAAGGGAAGATGTGTGTTAAGGATC
GATGCTATAAGCAACCGAGTTATGGCGTGGCCGGCAGCAAGAGTCCGGAA
TACTGCGCGGTGCATGCTTTGGAAGGAATGATTAACGTTCGACACAAGAG
ATGTGCTAAGGATGGATGCGTTAAACGATCGAGTTATGGCGTGTCCGGAA
CCAAGAAAGTGGAATACTGTGCTCTGCATGCTTTAAAAGGGATGGTCAAA
GTGTACAACAAGGGGTGTGCTAGCGACGGATGCTCTAAATGTCCGACCTA
CGGAGTCGCCGGCACCAAGAAAGCGGAATACTGTGTAGTGCATGCTTTGG
AAGGGATGATCGACGTTATGAGAATACGGTGCTCTAGTGATCGATGTTTT
AAGTACCCGAGCTATGGCGTGGCCGGCAGCAAAAAGGCGCAATACTGCGC
GGTGCATGCTTTAGATGGGATGATCAACGTTGTGAGCAAGAGGTGTGCTG
GTGATGGATGTTTGAAGCAACCGAGGTATGGCGTAGCTGGCAGCAAGAAC
GCGGAATACTGTGCGGTGCATTCCTTAGCAGGGATGATCAATGTTCAAGG
GAAGATGTGTGCTAAGGACGGATGCTATAAGCAACCGAGTTATGGCGTGG
CCGGCAGCAAGAGTCCGGAATACTGCGCGGTGCATGCTTTGAAAGGGATG
ATTAACGTTCGATGTAAGATATGTGCTAAGGATGGATGCTTTAAACGATC
GAGTTATGGCGTGTTCGGAACCAAGAAAGCGGAATACTGTGCGGTGCATG
CTTTGGAAGGGATGATCGACGTTATAAGAATACATTGTTCTAGTGATGGA
TGTCTTAAGTACCCGAGTTATGGCGAGGCCGGCAGCAGTAAGGCGGAATA
CTGCGCGGTGCATGCTTTAGAGGGGATGATCAACGTTGTGAGCAGGAGGT
GTGCTAATGATGGATGCTTTAAGCAACCGAGGTATGGCGTGACTGGCAGC
AAGAAAGCGGAATACTGCGCGGTGCATGCTTTGAAAGGGATGCTCAGAGT
TCACAACAAGGGTTGTGCTAGCGACGGATGCATTAAGCGTCCGAGTCATG
GTGTAGTCGGCAGCAAAACACCGGAGTACTGCGCGTTGCATTCTTTGGAA
GGGATGAAGGATGTTTCGGCCAATAGGTGTGATGGTGATAATTCGGCTGC
ACGAAGTCAGGCTAGGACCAGGAAGCGAATGCCCGAGGCTACTGCTCGAG
AAGTATCTGTTTTAGACGGAGAAAGCACGACTAAGTTTAAGCACACCTGT
TACAATGCAGTATCAGATGCAAAAAGAGTGAAAATTGAGGTATCCCTATC
TATATCCTAG
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