mRNA_H-elongata_contig72389.14908.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig72389.14908.1
Unique NamemRNA_H-elongata_contig72389.14908.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig72389.14908.1 vs. uniprot
Match: D7G7J2_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J2_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 2.160e-20
Identity = 43/60 (71.67%), Postives = 51/60 (85.00%), Query Frame = 1 
Query:    1 MRIRLYKDGAMSKLLNQLPKDSTNATVPLQGPYLMDSLSPPPAHRNVIMIAAGTGINPST 180
            MRIR+Y DGAMSKLL +L KD+ N  V LQGP+L++ L+PPPAHRNVIMIAAGTG+NP T
Sbjct: 1205 MRIRMYHDGAMSKLLEKLSKDTDNVAVQLQGPFLVNKLAPPPAHRNVIMIAAGTGVNPRT 1264
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BLAST of mRNA_H-elongata_contig72389.14908.1 vs. uniprot
Match: D7G7J1_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J1_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 3.560e-19
Identity = 42/67 (62.69%), Postives = 53/67 (79.10%), Query Frame = 1 
Query:    1 MRIRLYKDGAMSKLLNQLPKDSTNATVPLQGPYLMDSLSPPPAHRNVIMIAAGTGINPSTVYCSKHR 201
            MRIR+Y DGAMSKLL +L +D+ NA V LQGP+L++ L+PPP +RNVIMIAAGTG+NP T    + R
Sbjct: 1211 MRIRMYHDGAMSKLLEKLSQDTDNAAVQLQGPFLINKLAPPPVYRNVIMIAAGTGVNPRTPRSPRGR 1277
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BLAST of mRNA_H-elongata_contig72389.14908.1 vs. uniprot
Match: D7FX04_ECTSI (Dopamine beta-monooxygenase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX04_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 4.850e-19
Identity = 42/58 (72.41%), Postives = 48/58 (82.76%), Query Frame = 1 
Query:    1 MRIRLYKDGAMSKLLNQLPKDSTNATVPLQGPYLMDSLSPPPAHRNVIMIAAGTGINP 174
            MRIRLY DGAMSKLL +L KD+ N  V LQGP+++  L PPPAHRNV+MIAAGTGINP
Sbjct:  836 MRIRLYHDGAMSKLLERLAKDTDNPAVQLQGPFVIQKLVPPPAHRNVVMIAAGTGINP 893
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BLAST of mRNA_H-elongata_contig72389.14908.1 vs. uniprot
Match: A0A6H5JBL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBL8_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 4.880e-19
Identity = 42/58 (72.41%), Postives = 48/58 (82.76%), Query Frame = 1 
Query:    1 MRIRLYKDGAMSKLLNQLPKDSTNATVPLQGPYLMDSLSPPPAHRNVIMIAAGTGINP 174
            MRIRLY DGAMSKLL +L KD+ N  V LQGP+++  L PPPAHRNV+MIAAGTGINP
Sbjct: 1526 MRIRLYHDGAMSKLLERLAKDTDNPAVQLQGPFVIQKLVPPPAHRNVVMIAAGTGINP 1583
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BLAST of mRNA_H-elongata_contig72389.14908.1 vs. uniprot
Match: D8LFE6_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFE6_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 9.080e-19
Identity = 43/58 (74.14%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:    1 MRIRLYKDGAMSKLLNQLPKDSTNATVPLQGPYLMDSLSPPPAHRNVIMIAAGTGINP 174
            MRIRLY DGAMSKLL  L KDS N TV LQ P+++  L PPPAHRNV+MIAAGTGINP
Sbjct: 1287 MRIRLYTDGAMSKLLENLAKDSDNPTVRLQAPFVIQKLVPPPAHRNVMMIAAGTGINP 1344
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BLAST of mRNA_H-elongata_contig72389.14908.1 vs. uniprot
Match: D8LN38_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN38_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 1.430e-18
Identity = 39/63 (61.90%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:    1 MRIRLYKDGAMSKLLNQLPKDSTNATVPLQGPYLMDSLSPPPAHRNVIMIAAGTGINPSTVYC 189
            M IR+Y DGAMSKLL +L +D+ N TV LQ P+L++ L+P PAHR VIMIAAGT +NPS   C
Sbjct:    1 MHIRMYHDGAMSKLLEKLSEDADNPTVQLQVPFLIEKLAPRPAHRKVIMIAAGTAVNPSKQNC 63
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BLAST of mRNA_H-elongata_contig72389.14908.1 vs. uniprot
Match: D7FQW8_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQW8_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 3.150e-18
Identity = 39/58 (67.24%), Postives = 48/58 (82.76%), Query Frame = 1 
Query:    1 MRIRLYKDGAMSKLLNQLPKDSTNATVPLQGPYLMDSLSPPPAHRNVIMIAAGTGINP 174
            MRIRLY DGAMS+LL +L KD+ N  + LQGP+++  L PPPAHRNV+MIAAGTG+NP
Sbjct: 1038 MRIRLYHDGAMSQLLEKLSKDTDNPAIQLQGPFIITKLVPPPAHRNVVMIAAGTGVNP 1095
[Close]
BLAST of mRNA_H-elongata_contig72389.14908.1 vs. uniprot
Match: A0A6H5K906_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K906_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 6.860e-9
Identity = 34/64 (53.12%), Postives = 41/64 (64.06%), Query Frame = 1 
Query:    1 MRIRLYKDGAMSKLLNQLPK-------DSTNATVPLQGPYLMDSLSPPPAHRNVIMIAAGTGIN 171
            MRIRLY DG M+ LL QL +       +  N+ V LQG +L   L+P PAHRN +MIAAGTG N
Sbjct:   83 MRIRLYPDGLMNGLLAQLIRVRGIGHQNLDNSAVQLQGAFLRHWLTPSPAHRNAVMIAAGTGPN 146
[Close]
BLAST of mRNA_H-elongata_contig72389.14908.1 vs. uniprot
Match: A0A6H5KC42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC42_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 1.800e-8
Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:   70 NATVPLQGPYLMDSLSPPPAHRNVIMIAAGTGINPS 177
            N  V LQGP+L   L+PPPAHRNV+MIAAGTG+NPS
Sbjct:  599 NPAVQLQGPFLQHRLTPPPAHRNVVMIAAGTGVNPS 634
[Close]
BLAST of mRNA_H-elongata_contig72389.14908.1 vs. uniprot
Match: A0A6H5JX59_9PHAE (Cytochrome b5 heme-binding domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX59_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 6.320e-8
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:   70 NATVPLQGPYLMDSLSPPPAHRNVIMIAAGTGINP 174
            N  V LQGP+L   L+PPPAHRNV+MIAAGTG+NP
Sbjct:  778 NPAVQLQGPFLQHRLTPPPAHRNVVMIAAGTGVNP 812
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72389.14908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7G7J2_ECTSI2.160e-2071.67Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D7G7J1_ECTSI3.560e-1962.69Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D7FX04_ECTSI4.850e-1972.41Dopamine beta-monooxygenase, putative n=1 Tax=Ecto... [more]
A0A6H5JBL8_9PHAE4.880e-1972.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFE6_ECTSI9.080e-1974.14Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D8LN38_ECTSI1.430e-1861.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FQW8_ECTSI3.150e-1867.24Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5K906_9PHAE6.860e-953.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC42_9PHAE1.800e-872.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JX59_9PHAE6.320e-871.43Cytochrome b5 heme-binding domain-containing prote... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72389contigH-elongata_contig72389:2567..3103 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.6
Seed ortholog evalue4e-17
Seed eggNOG ortholog2880.D7G7J2
EggNOG free text desc.peroxidase activity
EggNOG OGsKOG2408@1,KOG2408@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size210
Cds size210
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931125.1176062-CDS-H-elongata_contig72389:2566..27161622931125.1176062-CDS-H-elongata_contig72389:2566..2716Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72389 2567..2716 -
1691679708.2349427-CDS-H-elongata_contig72389:2566..27161691679708.2349427-CDS-H-elongata_contig72389:2566..2716Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72389 2567..2716 -
1622931125.1297739-CDS-H-elongata_contig72389:3043..31031622931125.1297739-CDS-H-elongata_contig72389:3043..3103Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72389 3044..3103 -
1691679708.2462816-CDS-H-elongata_contig72389:3043..31031691679708.2462816-CDS-H-elongata_contig72389:3043..3103Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72389 3044..3103 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72389.14908.1prot_H-elongata_contig72389.14908.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig72389 2567..3103 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig72389.14908.1

>prot_H-elongata_contig72389.14908.1 ID=prot_H-elongata_contig72389.14908.1|Name=mRNA_H-elongata_contig72389.14908.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
MRIRLYKDGAMSKLLNQLPKDSTNATVPLQGPYLMDSLSPPPAHRNVIMI
AAGTGINPSTVYCSKHRDN*
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mRNA from alignment at H-elongata_contig72389:2567..3103-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig72389.14908.1 ID=mRNA_H-elongata_contig72389.14908.1|Name=mRNA_H-elongata_contig72389.14908.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=537bp|location=Sequence derived from alignment at H-elongata_contig72389:2567..3103- (Himanthalia elongata Himel1 dioecious)
ATGCGTATCAGGTTGTACAAGGATGGCGCCATGAGTAAGCTGTTGAATCA
GCTCCCAAAGGTGAGCCCTGGCCAGCTATAGCCCTGAGTGCACCTCCAAT
GACGCAAGAATATATATTTTTAGATAATACTAATACCATAGACGAGTGCC
GATGAGGTGACCCAGTCAGAGAGAAGGCGTACTTGCAGCGCTTTTATTCG
GTGCAAGCAATGAACCGGCCATTTTCTTGACGTTGTCTGGACGATACATG
CGGGGAATGGAGATTCCACGAACCGTATATCACCACCACCATTTATGGTG
GACCCCGAGAAAAGGGCCCCTGAAACCCGCGACGAACTGTTCCTGCGTGG
CAAGCGTGCCTAGCTCACCGTGTGCTTTAAATGACAGGACTCCACGAACG
CGACCGTTCCGCTACAGGGACCATACCTCATGGACAGCCTCAGTCCGCCT
CCAGCCCACCGCAACGTCATCATGATTGCCGCGGGCACGGGGATCAATCC
AAGTACGGTATATTGTTCAAAGCATCGTGATAACTAG
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Coding sequence (CDS) from alignment at H-elongata_contig72389:2567..3103-

>mRNA_H-elongata_contig72389.14908.1 ID=mRNA_H-elongata_contig72389.14908.1|Name=mRNA_H-elongata_contig72389.14908.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig72389:2567..3103- (Himanthalia elongata Himel1 dioecious)
ATGCGTATCAGGTTGTACAAGGATGGCGCCATGAGTAAGCTGTTGAATCA
GCTCCCAAAGATGCGTATCAGGTTGTACAAGGATGGCGCCATGAGTAAGC
TGTTGAATCAGCTCCCAAAGGACTCCACGAACGCGACCGTTCCGCTACAG
GGACCATACCTCATGGACAGCCTCAGTCCGCCTCCAGCCCACCGCAACGT
CATCATGATTGCCGCGGGCACGGGGATCAATCCAAGTACGGTATATTGTT
CAAAGCATCGTGATAACTAGGACTCCACGAACGCGACCGTTCCGCTACAG
GGACCATACCTCATGGACAGCCTCAGTCCGCCTCCAGCCCACCGCAACGT
CATCATGATTGCCGCGGGCACGGGGATCAATCCAAGTACGGTATATTGTT
CAAAGCATCGTGATAACTAG
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