mRNA_H-elongata_contig72378.14906.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig72378.14906.1
Unique NamemRNA_H-elongata_contig72378.14906.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig72378.14906.1 vs. uniprot
Match: D8LN33_ECTSI (Putative subunit of the Anaphase Promoting Complex n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN33_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 5.240e-22
Identity = 46/48 (95.83%), Postives = 46/48 (95.83%), Query Frame = 1 
Query:    1 GVDVFAALCCLRGQAYANLDNRPRAAVWLRTALEIDARCVEALQCLTR 144
            GVDV AALCCLRGQAYA LDNRPRAAVWLRTALEIDARCVEALQCLTR
Sbjct:  281 GVDVLAALCCLRGQAYAYLDNRPRAAVWLRTALEIDARCVEALQCLTR 328
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BLAST of mRNA_H-elongata_contig72378.14906.1 vs. uniprot
Match: A0A6H5JPV4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPV4_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 5.240e-22
Identity = 46/48 (95.83%), Postives = 46/48 (95.83%), Query Frame = 1 
Query:    1 GVDVFAALCCLRGQAYANLDNRPRAAVWLRTALEIDARCVEALQCLTR 144
            GVDV AALCCLRGQAYA LDNRPRAAVWLRTALEIDARCVEALQCLTR
Sbjct:  340 GVDVLAALCCLRGQAYAYLDNRPRAAVWLRTALEIDARCVEALQCLTR 387
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BLAST of mRNA_H-elongata_contig72378.14906.1 vs. uniprot
Match: A0A835ZAK2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAK2_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 6.520e-8
Identity = 26/45 (57.78%), Postives = 30/45 (66.67%), Query Frame = 1 
Query:    4 VDVFAALCCLRGQAYANLDNRPRAAVWLRTALEIDARCVEALQCL 138
            V   AALCCLRG  Y  +D+R RA VWLR AL  D +CV+AL  L
Sbjct:  249 VHPLAALCCLRGSMYVEVDSRARAVVWLRAALAADYKCVDALHML 293
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BLAST of mRNA_H-elongata_contig72378.14906.1 vs. uniprot
Match: A0A7R9YB69_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YB69_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 7.150e-6
Identity = 24/46 (52.17%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:    1 GVDVFAALCCLRGQAYANLDNRPRAAVWLRTALEIDARCVEALQCL 138
            G+DV A+LC   G A+  L+NR RA  +L  ALE+D RCVEA++ L
Sbjct:  138 GIDVVASLCTTMGLAFEVLENRTRATGYLVAALEVDPRCVEAMETL 183
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72378.14906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LN33_ECTSI5.240e-2295.83Putative subunit of the Anaphase Promoting Complex... [more]
A0A6H5JPV4_9PHAE5.240e-2295.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZAK2_9STRA6.520e-857.78Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9YB69_9STRA7.150e-652.17Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72378contigH-elongata_contig72378:247..393 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.0
Seed ortholog evalue6.6e-19
Seed eggNOG ortholog2880.D8LN33
KEGG koko:K03353
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05166,map04110,map04111,map04113,map04114,map04120,map04914,map05166
KEGG ModuleM00389
EggNOG free text desc.cell division
EggNOG OGsKOG1173@1,KOG1173@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01009,ko03036,ko04121
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size147
Cds size147
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931124.8476703-CDS-H-elongata_contig72378:246..3931622931124.8476703-CDS-H-elongata_contig72378:246..393Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72378 247..393 -
1691679708.1716692-CDS-H-elongata_contig72378:246..3931691679708.1716692-CDS-H-elongata_contig72378:246..393Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72378 247..393 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72378.14906.1prot_H-elongata_contig72378.14906.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig72378 247..393 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig72378.14906.1

>prot_H-elongata_contig72378.14906.1 ID=prot_H-elongata_contig72378.14906.1|Name=mRNA_H-elongata_contig72378.14906.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=49bp
GVDVFAALCCLRGQAYANLDNRPRAAVWLRTALEIDARCVEALQCLTR*
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mRNA from alignment at H-elongata_contig72378:247..393-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig72378.14906.1 ID=mRNA_H-elongata_contig72378.14906.1|Name=mRNA_H-elongata_contig72378.14906.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=147bp|location=Sequence derived from alignment at H-elongata_contig72378:247..393- (Himanthalia elongata Himel1 dioecious)
GGGGTGGACGTGTTCGCGGCACTCTGCTGTTTGAGAGGGCAGGCGTACGC
CAACCTCGACAACCGTCCGCGAGCCGCGGTTTGGCTCCGGACGGCTCTCG
AAATCGACGCTCGATGTGTGGAGGCTCTGCAGTGCTTGACCCGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig72378:247..393-

>mRNA_H-elongata_contig72378.14906.1 ID=mRNA_H-elongata_contig72378.14906.1|Name=mRNA_H-elongata_contig72378.14906.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at H-elongata_contig72378:247..393- (Himanthalia elongata Himel1 dioecious)
GGGGTGGACGTGTTCGCGGCACTCTGCTGTTTGAGAGGGCAGGCGTACGC
CAACCTCGACAACCGTCCGCGAGCCGCGGTTTGGCTCCGGACGGCTCTCG
AAATCGACGCTCGATGTGTGGAGGCTCTGCAGTGCTTGACCCGGTAAGGG
GTGGACGTGTTCGCGGCACTCTGCTGTTTGAGAGGGCAGGCGTACGCCAA
CCTCGACAACCGTCCGCGAGCCGCGGTTTGGCTCCGGACGGCTCTCGAAA
TCGACGCTCGATGTGTGGAGGCTCTGCAGTGCTTGACCCGGTAA
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