mRNA_H-elongata_contig72336.14904.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig72336.14904.1
Unique NamemRNA_H-elongata_contig72336.14904.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig72336.14904.1 vs. uniprot
Match: D8LQU6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQU6_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 7.380e-24
Identity = 54/107 (50.47%), Postives = 71/107 (66.36%), Query Frame = 1 
Query:  103 WKSAWCTSGRSKTTSVSLAVTTCSRTEEVLDQRSFHRAAAYQGGIFCLAAHSGNLGGLQVAAKKLSPGWRSFGVMEGMTDVAAAGGHLEILRWAKEEGCGISLRLCK 423
            W+S W   GR K TSVSLA  T +R E ++ Q SFH A  + GG+FCLAA +GNLGG+Q AA++   GW+S G +  MT  AA+ GHL IL WAK  GC +S+ + +
Sbjct:   75 WRSTWEAEGRPKKTSVSLATATNARVETIMGQPSFHAATGHLGGVFCLAASAGNLGGIQTAARESGDGWKSLGPVVMMTAEAASAGHLHILEWAKSSGCRLSVHVLR 181
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BLAST of mRNA_H-elongata_contig72336.14904.1 vs. uniprot
Match: A0A6H5JT58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT58_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.240e-14
Identity = 39/78 (50.00%), Postives = 52/78 (66.67%), Query Frame = 1 
Query:  190 LDQRSFHRAAAYQGGIFCLAAHSGNLGGLQVAAKKLSPGWRSFGVMEGMTDVAAAGGHLEILRWAKEEGCGISLRLCK 423
            + Q SFH A  + GG+FCLAA +GNLGG+Q AA++   GW S G +  MT  AA+ GHL IL WAK  GC +S+ + +
Sbjct:    1 MGQPSFHVATRHLGGVFCLAASAGNLGGIQTAARESGDGWESLGSVVMMTAEAASAGHLHILEWAKSAGCRLSVHILR 78
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72336.14904.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQU6_ECTSI7.380e-2450.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JT58_9PHAE1.240e-1450.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72336contigH-elongata_contig72336:251..1222 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin-repeat protein
Ec32 orthologEc-24_002340.1
Exons1
Model size972
Cds size972
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931124.7589066-CDS-H-elongata_contig72336:250..12221622931124.7589066-CDS-H-elongata_contig72336:250..1222Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72336 251..1222 +
1691679708.1497283-CDS-H-elongata_contig72336:250..12221691679708.1497283-CDS-H-elongata_contig72336:250..1222Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72336 251..1222 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72336.14904.1prot_H-elongata_contig72336.14904.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig72336 251..1222 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig72336.14904.1

>prot_H-elongata_contig72336.14904.1 ID=prot_H-elongata_contig72336.14904.1|Name=mRNA_H-elongata_contig72336.14904.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=324bp
RAKQLLQDHADLISHLLTYSHPQDYLFVASVSRAWKSAWCTSGRSKTTSV
SLAVTTCSRTEEVLDQRSFHRAAAYQGGIFCLAAHSGNLGGLQVAAKKLS
PGWRSFGVMEGMTDVAAAGGHLEILRWAKEEGCGISLRLCKYAAQGGHLN
ILKWALIEGYPLDQDTCALAAENGHLEVLKWAREQGCSWDTRTCSGAAGG
GHLEVLKWARSQGCSWNKETCEFAALHGNLALLKWVREQGCPWDARTCSF
AGLGGHIEILRWARENKCEWDEDTCACAAQGGHLEILRWAREQGCPWDAK
QCASIASRRQYSGVKEWITRHAQ*
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mRNA from alignment at H-elongata_contig72336:251..1222+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig72336.14904.1 ID=mRNA_H-elongata_contig72336.14904.1|Name=mRNA_H-elongata_contig72336.14904.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=972bp|location=Sequence derived from alignment at H-elongata_contig72336:251..1222+ (Himanthalia elongata Himel1 dioecious)
CGAGCCAAACAGCTGCTTCAGGACCACGCGGACTTAATCTCGCACTTACT
AACCTACAGCCACCCACAGGATTACTTATTCGTGGCCAGCGTGAGCAGAG
CCTGGAAGTCGGCGTGGTGCACCAGCGGTCGATCGAAAACGACGAGCGTT
TCATTGGCGGTCACAACCTGCTCTAGGACAGAGGAGGTTTTAGACCAGCG
TTCCTTTCACCGAGCGGCGGCATACCAAGGCGGCATATTCTGCCTTGCCG
CGCATTCTGGTAACCTTGGAGGGCTTCAGGTGGCAGCAAAAAAACTCAGC
CCTGGTTGGAGATCCTTCGGTGTCATGGAAGGAATGACCGATGTAGCTGC
GGCGGGTGGGCATCTGGAGATCCTCCGGTGGGCGAAGGAGGAGGGGTGCG
GCATCAGCCTTCGCCTGTGCAAGTACGCTGCCCAGGGCGGACATTTGAAT
ATCCTGAAATGGGCTCTGATCGAGGGATACCCTTTGGACCAGGACACTTG
CGCGCTGGCGGCCGAAAACGGACACCTCGAGGTCCTAAAGTGGGCGAGGG
AGCAAGGATGCTCTTGGGATACACGTACGTGCAGTGGAGCGGCCGGGGGA
GGGCACTTGGAGGTCCTCAAGTGGGCGCGGTCGCAGGGATGCAGCTGGAA
TAAAGAGACCTGTGAATTCGCCGCGTTGCATGGAAATCTGGCACTTCTTA
AATGGGTGAGGGAACAAGGGTGCCCTTGGGACGCGAGGACTTGCAGCTTT
GCTGGACTTGGTGGACATATAGAAATCCTGCGGTGGGCGAGAGAGAACAA
ATGCGAATGGGACGAGGACACCTGTGCATGCGCGGCTCAGGGCGGCCACC
TCGAGATACTCCGATGGGCGCGGGAGCAGGGATGCCCTTGGGACGCTAAG
CAATGTGCTAGTATTGCCAGTCGTCGTCAATACTCTGGAGTCAAGGAGTG
GATCACCCGACACGCGCAATAA
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Coding sequence (CDS) from alignment at H-elongata_contig72336:251..1222+

>mRNA_H-elongata_contig72336.14904.1 ID=mRNA_H-elongata_contig72336.14904.1|Name=mRNA_H-elongata_contig72336.14904.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1944bp|location=Sequence derived from alignment at H-elongata_contig72336:251..1222+ (Himanthalia elongata Himel1 dioecious)
CGAGCCAAACAGCTGCTTCAGGACCACGCGGACTTAATCTCGCACTTACT
AACCTACAGCCACCCACAGGATTACTTATTCGTGGCCAGCGTGAGCAGAG
CCTGGAAGTCGGCGTGGTGCACCAGCGGTCGATCGAAAACGACGAGCGTT
TCATTGGCGGTCACAACCTGCTCTAGGACAGAGGAGGTTTTAGACCAGCG
TTCCTTTCACCGAGCGGCGGCATACCAAGGCGGCATATTCTGCCTTGCCG
CGCATTCTGGTAACCTTGGAGGGCTTCAGGTGGCAGCAAAAAAACTCAGC
CCTGGTTGGAGATCCTTCGGTGTCATGGAAGGAATGACCGATGTAGCTGC
GGCGGGTGGGCATCTGGAGATCCTCCGGTGGGCGAAGGAGGAGGGGTGCG
GCATCAGCCTTCGCCTGTGCAAGTACGCTGCCCAGGGCGGACATTTGAAT
ATCCTGAAATGGGCTCTGATCGAGGGATACCCTTTGGACCAGGACACTTG
CGCGCTGGCGGCCGAAAACGGACACCTCGAGGTCCTAAAGTGGGCGAGGG
AGCAAGGATGCTCTTGGGATACACGTACGTGCAGTGGAGCGGCCGGGGGA
GGGCACTTGGAGGTCCTCAAGTGGGCGCGGTCGCAGGGATGCAGCTGGAA
TAAAGAGACCTGTGAATTCGCCGCGTTGCATGGAAATCTGGCACTTCTTA
AATGGGTGAGGGAACAAGGGTGCCCTTGGGACGCGAGGACTTGCAGCTTT
GCTGGACTTGGTGGACATATAGAAATCCTGCGGTGGGCGAGAGAGAACAA
ATGCGAATGGGACGAGGACACCTGTGCATGCGCGGCTCAGGGCGGCCACC
TCGAGATACTCCGATGGGCGCGGGAGCAGGGATGCCCTTGGGACGCTAAG
CAATGTGCTAGTATTGCCAGTCGTCGTCAATACTCTGGAGTCAAGGAGTG
GATCACCCGACACGCGCAATAACGAGCCAAACAGCTGCTTCAGGACCACG
CGGACTTAATCTCGCACTTACTAACCTACAGCCACCCACAGGATTACTTA
TTCGTGGCCAGCGTGAGCAGAGCCTGGAAGTCGGCGTGGTGCACCAGCGG
TCGATCGAAAACGACGAGCGTTTCATTGGCGGTCACAACCTGCTCTAGGA
CAGAGGAGGTTTTAGACCAGCGTTCCTTTCACCGAGCGGCGGCATACCAA
GGCGGCATATTCTGCCTTGCCGCGCATTCTGGTAACCTTGGAGGGCTTCA
GGTGGCAGCAAAAAAACTCAGCCCTGGTTGGAGATCCTTCGGTGTCATGG
AAGGAATGACCGATGTAGCTGCGGCGGGTGGGCATCTGGAGATCCTCCGG
TGGGCGAAGGAGGAGGGGTGCGGCATCAGCCTTCGCCTGTGCAAGTACGC
TGCCCAGGGCGGACATTTGAATATCCTGAAATGGGCTCTGATCGAGGGAT
ACCCTTTGGACCAGGACACTTGCGCGCTGGCGGCCGAAAACGGACACCTC
GAGGTCCTAAAGTGGGCGAGGGAGCAAGGATGCTCTTGGGATACACGTAC
GTGCAGTGGAGCGGCCGGGGGAGGGCACTTGGAGGTCCTCAAGTGGGCGC
GGTCGCAGGGATGCAGCTGGAATAAAGAGACCTGTGAATTCGCCGCGTTG
CATGGAAATCTGGCACTTCTTAAATGGGTGAGGGAACAAGGGTGCCCTTG
GGACGCGAGGACTTGCAGCTTTGCTGGACTTGGTGGACATATAGAAATCC
TGCGGTGGGCGAGAGAGAACAAATGCGAATGGGACGAGGACACCTGTGCA
TGCGCGGCTCAGGGCGGCCACCTCGAGATACTCCGATGGGCGCGGGAGCA
GGGATGCCCTTGGGACGCTAAGCAATGTGCTAGTATTGCCAGTCGTCGTC
AATACTCTGGAGTCAAGGAGTGGATCACCCGACACGCGCAATAA
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