mRNA_H-elongata_contig7228.14901.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7228.14901.1
Unique NamemRNA_H-elongata_contig7228.14901.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig7228.14901.1 vs. uniprot
Match: D8LLV5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLV5_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 5.520e-10
Identity = 39/79 (49.37%), Postives = 52/79 (65.82%), Query Frame = 1 
Query:   31 GGVTDDEPATASTAAGTRRPLLDDDNRNVKIAAAGLSDDPLSLMMEERAIATNMYRHMGDLLDHHEAD-LMMSYRSSGS 264
            GGV D   +T + A  T+  + +D  R+VK+A AGLSDDPLS+MM+ERA+A NM RH G +LD    D  +M+  S GS
Sbjct:  170 GGVAD---STTAHAPETQLAVFNDVERDVKVAVAGLSDDPLSMMMQERAVARNMSRHGGGVLDDDMLDGAIMTPGSPGS 245
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BLAST of mRNA_H-elongata_contig7228.14901.1 vs. uniprot
Match: A0A6H5JPH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH3_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 2.340e-6
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:  112 NVKIAAAGLSDDPLSLMMEERAIATNMYRHMGDLLDHHEAD-LMMSYRSSGS 264
            +VK+A AGLSDDPLS+MM+ERA+A NM RH G + D+   D  +M+  S GS
Sbjct:  192 DVKVAVAGLSDDPLSMMMQERAMARNMSRHGGSVPDNDMLDDAIMTPGSPGS 243
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7228.14901.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLV5_ECTSI5.520e-1049.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JPH3_9PHAE2.340e-655.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7228contigH-elongata_contig7228:2119..3872 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.1
Seed ortholog evalue2e-08
Seed eggNOG ortholog2880.D8LLV5
Preferred nameC16orf62
GOsGO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006810,GO:0006887,GO:0006892,GO:0006893,GO:0006955,GO:0008150,GO:0009987,GO:0012505,GO:0012506,GO:0016020,GO:0016192,GO:0030141,GO:0030659,GO:0030667,GO:0031090,GO:0031410,GO:0031982,GO:0032940,GO:0036230,GO:0042119,GO:0043226,GO:0043227,GO:0043229,GO:0043299,GO:0043312,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0048193,GO:0050896,GO:0051179,GO:0051234,GO:0070820,GO:0071944,GO:0097708,GO:0098588,GO:0098805,GO:0098876,GO:0099503,GO:0101002,GO:0101003
EggNOG free text desc.protein transport
EggNOG OGsKOG3682@1,KOG3682@2759
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size279
Cds size276
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7228.14901.1prot_H-elongata_contig7228.14901.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7228 2120..3872 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931124.5706227-CDS-H-elongata_contig7228:2119..21901622931124.5706227-CDS-H-elongata_contig7228:2119..2190Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7228 2120..2190 -
1691679708.0654325-CDS-H-elongata_contig7228:2119..21901691679708.0654325-CDS-H-elongata_contig7228:2119..2190Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7228 2120..2190 -
1622931124.586157-CDS-H-elongata_contig7228:2730..28241622931124.586157-CDS-H-elongata_contig7228:2730..2824Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7228 2731..2824 -
1691679708.0782607-CDS-H-elongata_contig7228:2730..28241691679708.0782607-CDS-H-elongata_contig7228:2730..2824Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7228 2731..2824 -
1622931124.5992637-CDS-H-elongata_contig7228:3761..38721622931124.5992637-CDS-H-elongata_contig7228:3761..3872Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7228 3762..3872 -
1691679708.0882416-CDS-H-elongata_contig7228:3761..38721691679708.0882416-CDS-H-elongata_contig7228:3761..3872Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7228 3762..3872 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7228.14901.1

>prot_H-elongata_contig7228.14901.1 ID=prot_H-elongata_contig7228.14901.1|Name=mRNA_H-elongata_contig7228.14901.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=92bp
DGSQARQDLGGGVTDDEPATASTAAGTRRPLLDDDNRNVKIAAAGLSDDP
LSLMMEERAIATNMYRHMGDLLDHHEADLMMSYRSSGSLLAV
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mRNA from alignment at H-elongata_contig7228:2119..3872-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7228.14901.1 ID=mRNA_H-elongata_contig7228.14901.1|Name=mRNA_H-elongata_contig7228.14901.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1754bp|location=Sequence derived from alignment at H-elongata_contig7228:2119..3872- (Himanthalia elongata Himel1 dioecious)
GATGGCTCGCAGGCGAGACAAGACCTCGGCGGCGGAGTTACTGATGACGA
ACCCGCTACGGCTAGCACTGCCGCCGGGACGCGACGGCCTTTGCTCGATG
ACGACAACCGGGTAGGCGATGTGCAGCGGTGTGTAAAGTATGAACGCCCC
CCCCCTCCCTCCCGCTGCCCTTTGTTATCGACAGTGCAGGCGCAAGTTTC
CTTTCTGTAAATATTTTAGCGATATTTAGCTGTACTGTAAAATCTGCGCA
GCACTTTGAGCGTTCTCTTTTCTGAATTCCATCCATTATTGTAGCGGCTG
CCGTGATGCTCATTCCAGGTGTACACGTTGTTGCCAAGAGTAAAGTGATG
TGGTTGTGAATTTCACCGACGCTACTGCGATACCCGACGTGTTGTGCGCG
CCGTTCGTGCTGGGGTCCGTGCGTGCGCTGTGTGCTCGAATCCGTGCGTC
TGCCGTGCGTGAGTCATCGGTACGCGTTTGCGTTCATGTACGTTTTTACA
ACGTGCCCAAATATTTTTGCGGCGCTTCCGCCCTCTCCCCTTTATTGCTG
CCGGATTCTCCCTGTCACCAAAGGCGCGTGGAGCTCGCTAATCCGCCATA
GCTCGAAAAGCCAGCCTACACAAGCCTAACGCAAGACGCGCACAAAGAGA
TCTCGTCTTGCGACCGCCGCCATAAACAGTAGTGCCGCGACGGCGATACA
TTTCTCTTAAGAGTTTCTCTCCGAGGTCCGCTCATCTCCTCACCCCTCAC
TTCCCTTTCACAAAGGCGCTGCTGCGGTGCACTGAAGTCACGATGGTAGA
TTTATGAATGTTAGAGGTTAGACGCTGTGGCCTTCAAGTCTACCACGGCG
CTGATGGAGAGGGAGAGTGATATTTTGCAAGCCGGCGTCCTCCGTTGGCA
TTGTACCCTCCGAGGGTTCTCGTGTTCTAGAACGTTGTCGGGGTTTCTTT
TCTTGCAACGATCTCAGGCGTGTTGTTGTTTGCCTTCCTCTGTCTCGTTT
TTTTTCTTCTTTTTTGACTGACCGCGGGGGCTCCTGTTCCGCTAGCAGAA
CGTCAAGATTGCCGCAGCGGGGCTTTCCGATGATCCGCTGTCACTAATGA
TGGAAGAGCGGGCGATCGCGACGAACATGTACAGGCACATGGGTGAGGCG
TACCTCCATATGACCTTCTTGTTGTATATATATATAGAGATAAATATATC
GATAAATCAACCGACAACGACGTTGTACTGTTGTTATACCAAGTACTGGG
GCAGGAATCGAGTGAAGTTGGCAACTGCGCTACTCCTCGAGAAATCAGCG
CGCGCTAGGTTTGCTGTGTATAACCTCCTTTCTACTGCAGTTGTATGCTG
TCGCGTGGGCGTACGCCCTCGGCATAAATGTTGTCTCACCAAGCCGTGTA
ATGACGTCGTCGTGTGTGTCGTGTGTCCGAAAGCACCAAGTGCTAGACGT
CGTCGCAAAGGAGCATCTGTCGCTTGAAAAAATGACGCACGTACAATATT
ACACCACGGACTCGACACAAAATAAAACAGTACGACGGGAAAAACCAGTC
ATGCCTCGAATATCTTCTTGACTCGCGAGGTCATCCATCGCTAATGACCG
TGTTGCGCTGCTTTCCGCCGCCGCTCGCTGCTCATTTTCATGTACCTCGC
TACCCTCTTCGCTCTCGCCGCCTTTTTAACAGGAGATCTGCTCGATCACC
ACGAAGCCGATCTTATGATGTCTTACCGCTCGAGCGGCTCCCTCCTCGCG
GTCG
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Coding sequence (CDS) from alignment at H-elongata_contig7228:2119..3872-

>mRNA_H-elongata_contig7228.14901.1 ID=mRNA_H-elongata_contig7228.14901.1|Name=mRNA_H-elongata_contig7228.14901.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at H-elongata_contig7228:2119..3872- (Himanthalia elongata Himel1 dioecious)
GATGGCTCGCAGGCGAGACAAGACCTCGGCGGCGGAGTTACTGATGACGA
ACCCGCTACGGCTAGCACTGCCGCCGGGACGCGACGGCCTTTGCTCGATG
ACGACAACCGGGATGGCTCGCAGGCGAGACAAGACCTCGGCGGCGGAGTT
ACTGATGACGAACCCGCTACGGCTAGCACTGCCGCCGGGACGCGACGGCC
TTTGCTCGATGACGACAACCGGAACGTCAAGATTGCCGCAGCGGGGCTTT
CCGATGATCCGCTGTCACTAATGATGGAAGAGCGGGCGATCGCGACGAAC
ATGTACAGGCACATGGAACGTCAAGATTGCCGCAGCGGGGCTTTCCGATG
ATCCGCTGTCACTAATGATGGAAGAGCGGGCGATCGCGACGAACATGTAC
AGGCACATGGGAGATCTGCTCGATCACCACGAAGCCGATCTTATGATGTC
TTACCGCTCGAGCGGCTCCCTCCTCGCGGTCGAGATCTGCTCGATCACCA
CGAAGCCGATCTTATGATGTCTTACCGCTCGAGCGGCTCCCTCCTCGCGG
TC
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