mRNA_H-elongata_contig7224.14896.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig7224.14896.1 vs. uniprot
Match: D7G9A0_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9A0_ECTSI) HSP 1 Score: 114 bits (286), Expect = 2.430e-27 Identity = 57/87 (65.52%), Postives = 66/87 (75.86%), Query Frame = 3
Query: 423 RAAPRRATSLSSEGFYRGTA-----GSWAKAEGDTGEEKECVICMEEFTVDDPEMRTLCSCGVNKTFFHYSCLLKWLSKHSYCPACR 668
RA+PRR T +EGF G++ G G+ EE+ECVICMEEF+ +DPEM TLCSCGVNKTFFHYSCLL+WLSKHSYCPACR
Sbjct: 105 RASPRRGTI--NEGFRGGSSAVAGLGGRRAPGGEAEEERECVICMEEFSKEDPEMLTLCSCGVNKTFFHYSCLLQWLSKHSYCPACR 189
BLAST of mRNA_H-elongata_contig7224.14896.1 vs. uniprot
Match: A0A6H5KFU5_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFU5_9PHAE) HSP 1 Score: 111 bits (278), Expect = 6.170e-25 Identity = 55/87 (63.22%), Postives = 65/87 (74.71%), Query Frame = 3
Query: 423 RAAPRRATSLSSEGFYRGTA-----GSWAKAEGDTGEEKECVICMEEFTVDDPEMRTLCSCGVNKTFFHYSCLLKWLSKHSYCPACR 668
RA+PR+ T +EGF G++ G G+ EE+ECVICMEEF +DPEM TLCSCGVNKTFFHY+CLL+WLSKHSYCPACR
Sbjct: 320 RASPRQGTC--NEGFRGGSSAVAGLGGRRAPGGEAEEERECVICMEEFCKEDPEMLTLCSCGVNKTFFHYACLLQWLSKHSYCPACR 404
BLAST of mRNA_H-elongata_contig7224.14896.1 vs. uniprot
Match: A0A835Z175_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z175_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 2.350e-16 Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 3
Query: 534 ICMEEFTVDDPEMRTLCSCGVNKTFFHYSCLLKWLSKHSYCPACR 668
+C+ EFT +DPE+ TLCSCG+NKT FHY+CLL WL HSYCPACR
Sbjct: 1 MCLGEFTKEDPEVLTLCSCGMNKTAFHYACLLGWLEHHSYCPACR 45
BLAST of mRNA_H-elongata_contig7224.14896.1 vs. uniprot
Match: A0A6U0WDD7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0WDD7_9STRA) HSP 1 Score: 80.9 bits (198), Expect = 1.980e-15 Identity = 31/49 (63.27%), Postives = 38/49 (77.55%), Query Frame = 3
Query: 522 KECVICMEEFTVDDPEMRTLCSCGVNKTFFHYSCLLKWLSKHSYCPACR 668
KECVICM+EFT +PE+ LC CGVNKT FHY CLL+W+ ++CP CR
Sbjct: 120 KECVICMDEFTEKNPEVPVLCDCGVNKTHFHYHCLLEWMQHRNFCPVCR 168
BLAST of mRNA_H-elongata_contig7224.14896.1 vs. uniprot
Match: A0A7S2CKZ4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CKZ4_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 2.580e-14 Identity = 32/50 (64.00%), Postives = 36/50 (72.00%), Query Frame = 3
Query: 516 EEKECVICMEEFTVDDPEMRTLCSCGVNKTFFHYSCLLKWLSKHSYCPAC 665
E+ ECVICME F +P M TLC CGVNKT FHY+CLL W K +CPAC
Sbjct: 71 EDVECVICMETFDASNPMMPTLCKCGVNKTCFHYACLLTWKEKQDHCPAC 120
BLAST of mRNA_H-elongata_contig7224.14896.1 vs. uniprot
Match: A0A2P4YDS4_9STRA (RING-type domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YDS4_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 3.340e-13 Identity = 27/48 (56.25%), Postives = 41/48 (85.42%), Query Frame = 3
Query: 525 ECVICMEEFTVDDPEMRTLCSCGVNKTFFHYSCLLKWLSKHSYCPACR 668
EC++C++ F+ D+P++RTLC+CG+N+T FH SCLL+WL++ S CP CR
Sbjct: 146 ECIMCLDTFSEDNPKVRTLCNCGMNRTNFHMSCLLEWLNRDSNCPVCR 193
BLAST of mRNA_H-elongata_contig7224.14896.1 vs. uniprot
Match: A0A329SNC7_9STRA (RING-type domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SNC7_9STRA) HSP 1 Score: 75.5 bits (184), Expect = 3.530e-13 Identity = 27/48 (56.25%), Postives = 41/48 (85.42%), Query Frame = 3
Query: 525 ECVICMEEFTVDDPEMRTLCSCGVNKTFFHYSCLLKWLSKHSYCPACR 668
EC++C++ F+ D+P++RTLC+CG+N+T FH SCLL+WL++ S CP CR
Sbjct: 149 ECIMCLDTFSEDNPKVRTLCNCGMNRTNFHMSCLLEWLNRDSNCPVCR 196
BLAST of mRNA_H-elongata_contig7224.14896.1 vs. uniprot
Match: G4YPL0_PHYSP (RING-type domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=G4YPL0_PHYSP) HSP 1 Score: 75.5 bits (184), Expect = 3.730e-13 Identity = 27/48 (56.25%), Postives = 41/48 (85.42%), Query Frame = 3
Query: 525 ECVICMEEFTVDDPEMRTLCSCGVNKTFFHYSCLLKWLSKHSYCPACR 668
EC++C++ F+ D+P++RTLC+CG+N+T FH SCLL+WL++ S CP CR
Sbjct: 152 ECIMCLDTFSEDNPKVRTLCNCGMNRTNFHMSCLLEWLNRDSNCPVCR 199
BLAST of mRNA_H-elongata_contig7224.14896.1 vs. uniprot
Match: A0A482RWP0_9ARCH (RING-type domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RWP0_9ARCH) HSP 1 Score: 73.6 bits (179), Expect = 4.410e-13 Identity = 27/47 (57.45%), Postives = 37/47 (78.72%), Query Frame = 3
Query: 525 ECVICMEEFTVDDPEMRTLCSCGVNKTFFHYSCLLKWLSKHSYCPAC 665
EC+IC+EEFT D+P+++TLC+CG N++ FHY CLL WL + CP C
Sbjct: 77 ECIICLEEFTTDNPKVKTLCNCGENRSSFHYPCLLYWLEHKASCPNC 123
BLAST of mRNA_H-elongata_contig7224.14896.1 vs. uniprot
Match: A0A3M6VKV0_9STRA (RING-type domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VKV0_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 6.940e-13 Identity = 26/50 (52.00%), Postives = 41/50 (82.00%), Query Frame = 3
Query: 519 EKECVICMEEFTVDDPEMRTLCSCGVNKTFFHYSCLLKWLSKHSYCPACR 668
E EC++C++ F+ D+P++RTLC+CG+N+T FH SCL +WL++ + CP CR
Sbjct: 115 ELECIMCLDTFSQDNPKIRTLCNCGMNRTNFHMSCLFEWLNREANCPVCR 164 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7224.14896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 23
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig7224.14896.1 >prot_H-elongata_contig7224.14896.1 ID=prot_H-elongata_contig7224.14896.1|Name=mRNA_H-elongata_contig7224.14896.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp MKPRRISFPTAHQLLPSPAFSSMGEENGYGVSQDKSETSKGMLSCRAAPRback to top mRNA from alignment at H-elongata_contig7224:6674..10289+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig7224.14896.1 ID=mRNA_H-elongata_contig7224.14896.1|Name=mRNA_H-elongata_contig7224.14896.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3616bp|location=Sequence derived from alignment at H-elongata_contig7224:6674..10289+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig7224:6674..10289+ >mRNA_H-elongata_contig7224.14896.1 ID=mRNA_H-elongata_contig7224.14896.1|Name=mRNA_H-elongata_contig7224.14896.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at H-elongata_contig7224:6674..10289+ (Himanthalia elongata Himel1 dioecious)back to top |