mRNA_H-elongata_contig72224.14893.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig72224.14893.1
Unique NamemRNA_H-elongata_contig72224.14893.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig72224.14893.1 vs. uniprot
Match: A0A6H5K8Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Z3_9PHAE)

HSP 1 Score: 335 bits (859), Expect = 1.080e-107
Identity = 194/310 (62.58%), Postives = 220/310 (70.97%), Query Frame = 1 
Query:   16 QDPQTREPMDFFRNTPVEKKQMVRTYERFSQVISHLLQPNGRVLVVGEWGGRSVKAETANSNGVEDIDGV--------GNDYGFFNRVSGFGQNSSPSSPRRVFNLHFFVEARTPGEERKLKKWQNRPGAKWIAFGPIPPRAHGCKEAYSYVTGSEA-GERAEQRRKQKRARGKISKA-----AVVDAAEG-----GVAEATESTASSGA-----------GGLMSYTRYGECPTWYGTGRMCGLDVQARRVGSFESLPKKLKERVLQVDPDFDAGPAGTLEECRLLAARER-DKKEEQRRKKKWSLRRP 852
            QDP T EPMD FRNTPVEKKQ VRTYERFSQV+SHLLQPNGRVLVV EWGGRSVKAETAN+NGVE+I+G           D G  N      ++SS S PRRVFNLHFFVEARTP EER+LK+WQ RPGA+WIAFG  PPRAHGCKE YSYVTG E  G R    RK++  + ++  A     A  DA EG     GV + T + AS              GGLMSYTRYGECPTWYGTGRMCGLDVQARRV SF SLP KL+E VL+VDP+F+AGP GT+ E R  A  +R +++EE+RRK K SLRRP
Sbjct:  323 QDPATGEPMDHFRNTPVEKKQAVRTYERFSQVVSHLLQPNGRVLVVSEWGGRSVKAETANNNGVEEIEGGRGGWFPGGARDLGIVNDERSLARSSS-SPPRRVFNLHFFVEARTPKEERELKRWQERPGARWIAFGSPPPRAHGCKEVYSYVTGREREGGRGGNERKEEGKKDRLPWAWNRNKAASDAREGDDDAEGVDDGTVALASXXXXXXXXXXXXXXGGLMSYTRYGECPTWYGTGRMCGLDVQARRVDSFASLPAKLREEVLKVDPEFEAGPPGTMGEVRRAAREQRLEREEERRRKGKRSLRRP 631
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BLAST of mRNA_H-elongata_contig72224.14893.1 vs. uniprot
Match: D7FYF1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYF1_ECTSI)

HSP 1 Score: 323 bits (829), Expect = 4.050e-106
Identity = 194/310 (62.58%), Postives = 223/310 (71.94%), Query Frame = 1 
Query:   16 QDPQTREPMDFFRNTPVEKKQMVRTYERFSQVISHLLQPNGRVLVVGEWGGRSVKAETANSNGVEDIDGVGNDY---GFFNRVSGFGQNS---SPSSP-RRVFNLHFFVEARTPGEERKLKKWQNRPGAKWIAFGPIPPRAHGCKEAYSYVTGSE--AGERAEQRRKQKRAR----GKISKAAVVDAAEGG-----VAEATESTASSGAGG------------LMSYTRYGECPTWYGTGRMCGLDVQARRVGSFESLPKKLKERVLQVDPDFDAGPAGTLEECRLLAARER-DKKEEQRRKKKWSLRRP 852
            QDP T EPMD FRNTPVEKKQ VRTYERFSQV+SHLLQPNGRVLVV EW GRSVKAETAN+NGVE+I+G    +   G  +  SG  + S   SPSSP RRVFNLHFFVEARTP EER+LK+WQ RPGA+WIAFG  PPRAHGCKE YSYVTGSE   G    +R++ K+AR       SKAA  DA EG      V + + + ASS                LMSYTRYGECPTWYGTGRMCGLDVQARRV SF SLP KL+E+VL+VDP+F+ GP GT+ E R  A  +R +++EE+RRK + SLRRP
Sbjct:   89 QDPATGEPMDHFRNTPVEKKQAVRTYERFSQVVSHLLQPNGRVLVVSEWDGRSVKAETANNNGVEEIEGGRGGWFPGGARDLGSGKDERSLSRSPSSPPRRVFNLHFFVEARTPKEERELKRWQERPGARWIAFGSPPPRAHGCKEVYSYVTGSEREGGGGGNERKEGKKARLPWAWNRSKAAS-DAREGDDNAEVVDDGSVALASSSXXXXXXXXXXXXXXXLMSYTRYGECPTWYGTGRMCGLDVQARRVDSFSSLPAKLREKVLEVDPEFEVGPPGTMGEVRRAAREQRLEREEERRRKGRRSLRRP 397
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BLAST of mRNA_H-elongata_contig72224.14893.1 vs. uniprot
Match: A0A835YPS0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPS0_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 5.610e-18
Identity = 51/125 (40.80%), Postives = 64/125 (51.20%), Query Frame = 1 
Query:  370 RPGAKWIAFGPIPPRAHGCKEAYSYVTGSEAGERAEQRRKQKRARGKISKAAVVDAAEGGVAEATESTASSGAGGLMSYTRYGECPTWYGTGRMCGLDVQARRVGSFESLPKKLKERVLQVDPDF 744
            R G KWI  GP PP  +GCKE+Y+YV                             A EGG     ++       GLM+Y RYGECP+WY  G+MC LD+QARRV SF +LPK L+  V ++ P F
Sbjct:  152 RRGNKWIGIGPSPPPEYGCKESYTYV-----------------------------AREGGQDGEPDT-------GLMTYHRYGECPSWYAPGKMCSLDMQARRVESFSALPKPLQSAVRKLVPSF 240
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BLAST of mRNA_H-elongata_contig72224.14893.1 vs. uniprot
Match: A0A7S2K1Q5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K1Q5_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 2.000e-5
Identity = 42/146 (28.77%), Postives = 66/146 (45.21%), Query Frame = 1 
Query:  373 PGAKWIAFGP----IPPRAHGCKEAYSYVTGSEAGERAEQR------------------RKQKRARGKISKAAVVDAAEGGVAEATESTASSGAGGLMSYTRYGECPTWYGTGRMCGLDVQARRVGSFESLPKKLKERVLQVDPDF 744
            P +K + FG     I    +G +E+YSY   + AG R   R                  ++ +   G ++  A+++ AE      T++T        + Y+RYGECP WYG G+MC L++  +R+ SF   P  L  R+    P F
Sbjct:    1 PRSKLVQFGKDDRSIEQTRYGARESYSYTFSTTAGARIGIRSVLQFGTNLRRLLYQQYSKRFQNNSGDVNNNALLETAEDTTTLYTDAT--------VRYSRYGECPPWYGPGKMCTLELVGKRIDSFRDAPP-LAARIASEVPGF 137
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72224.14893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K8Z3_9PHAE1.080e-10762.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYF1_ECTSI4.050e-10662.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YPS0_9STRA5.610e-1840.80Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2K1Q5_9STRA2.000e-528.77Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72224contigH-elongata_contig72224:199..1433 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionankyrin repeat protein
Ec32 orthologEc-08_003820.1
Exons2
Model size882
Cds size882
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931123.271835-CDS-H-elongata_contig72224:198..9001622931123.271835-CDS-H-elongata_contig72224:198..900Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72224 199..900 -
1691679707.5532682-CDS-H-elongata_contig72224:198..9001691679707.5532682-CDS-H-elongata_contig72224:198..900Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72224 199..900 -
1622931123.290285-CDS-H-elongata_contig72224:1253..14331622931123.290285-CDS-H-elongata_contig72224:1253..1433Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72224 1254..1433 -
1691679707.5614696-CDS-H-elongata_contig72224:1253..14331691679707.5614696-CDS-H-elongata_contig72224:1253..1433Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72224 1254..1433 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72224.14893.1prot_H-elongata_contig72224.14893.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig72224 199..1433 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig72224.14893.1

>prot_H-elongata_contig72224.14893.1 ID=prot_H-elongata_contig72224.14893.1|Name=mRNA_H-elongata_contig72224.14893.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=294bp
MYVQPQDPQTREPMDFFRNTPVEKKQMVRTYERFSQVISHLLQPNGRVLV
VGEWGGRSVKAETANSNGVEDIDGVGNDYGFFNRVSGFGQNSSPSSPRRV
FNLHFFVEARTPGEERKLKKWQNRPGAKWIAFGPIPPRAHGCKEAYSYVT
GSEAGERAEQRRKQKRARGKISKAAVVDAAEGGVAEATESTASSGAGGLM
SYTRYGECPTWYGTGRMCGLDVQARRVGSFESLPKKLKERVLQVDPDFDA
GPAGTLEECRLLAARERDKKEEQRRKKKWSLRRPSLQGSAGNV*
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mRNA from alignment at H-elongata_contig72224:199..1433-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig72224.14893.1 ID=mRNA_H-elongata_contig72224.14893.1|Name=mRNA_H-elongata_contig72224.14893.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1235bp|location=Sequence derived from alignment at H-elongata_contig72224:199..1433- (Himanthalia elongata Himel1 dioecious)
ATGTATGTTCAACCTCAGGATCCACAAACTCGAGAACCGATGGATTTCTT
CCGCAACACCCCGGTTGAAAAGAAGCAAATGGTGCGAACATACGAGCGCT
TCTCGCAGGTGATCTCCCACCTCTTGCAGCCCAACGGCAGGGTGCTGGTG
GTGGGCGAATGGGGCGGCCGTTCGGTTAAGGTGAGGTATGCCCGGGTACC
TTCGAGACGCTTACCGCACGCCTCTCTCCCTTTTTCTGCGTATCGTTTTA
AAATTGCGAGCGAACCTATTGTTGCGGCGCGCCTGTAGAATTTTCCTGCA
GCAAACGCCTGCGAGACCGAAACGTGCAAGCGCCGTTTTGGAGACTACCG
ACGATGGGTTTTGTTTCTCCTCCCTCAACAAACTCCGCCAAGCGTTCATC
GACAAGGAAGCAGCCCATGCGTTTTGCTTGAGGGCCCTATACACAGGCAG
CAACATTTAGACTACTACGCTTGTCTTCGCCTTGATTGCCCCCCACCTAC
GGTCCCATCCAACGTTCTTCCCAAAACATCAAGGCGGAAACGGCGAACAG
CAACGGGGTGGAAGATATTGACGGTGTAGGAAACGATTACGGATTCTTCA
ACCGTGTGTCTGGTTTTGGGCAAAACTCTTCACCCTCTTCGCCGCGGCGC
GTTTTCAACCTGCACTTCTTCGTCGAGGCTAGAACCCCCGGGGAAGAGCG
AAAGCTCAAGAAATGGCAGAACCGACCGGGTGCAAAGTGGATTGCCTTCG
GTCCTATCCCTCCCCGGGCTCACGGCTGCAAAGAAGCCTACAGCTACGTT
ACCGGGAGTGAGGCGGGTGAGAGAGCAGAGCAACGGCGGAAGCAAAAAAG
AGCGCGTGGGAAGATAAGCAAGGCCGCTGTCGTGGACGCCGCAGAGGGGG
GCGTGGCAGAAGCGACAGAGTCAACGGCATCGAGCGGGGCGGGAGGGCTT
ATGTCGTACACGAGGTACGGCGAGTGCCCGACGTGGTACGGCACGGGACG
AATGTGCGGCTTGGACGTGCAGGCAAGGCGTGTCGGTTCGTTCGAGTCTC
TTCCGAAGAAGTTAAAGGAGAGAGTGCTGCAGGTCGACCCCGACTTCGAT
GCGGGTCCTGCAGGCACTCTGGAGGAGTGCAGGCTGCTCGCGGCACGGGA
GCGGGACAAGAAGGAGGAACAGAGGCGAAAAAAAAAATGGTCGCTACGAC
GGCCGTCTCTGCAAGGTTCCGCGGGCAATGTGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig72224:199..1433-

>mRNA_H-elongata_contig72224.14893.1 ID=mRNA_H-elongata_contig72224.14893.1|Name=mRNA_H-elongata_contig72224.14893.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1764bp|location=Sequence derived from alignment at H-elongata_contig72224:199..1433- (Himanthalia elongata Himel1 dioecious)
ATGTATGTTCAACCTCAGGATCCACAAACTCGAGAACCGATGGATTTCTT
CCGCAACACCCCGGTTGAAAAGAAGCAAATGGTGCGAACATACGAGCGCT
TCTCGCAGGTGATCTCCCACCTCTTGCAGCCCAACGGCAGGGTGCTGGTG
GTGGGCGAATGGGGCGGCCGTTCGGTTAAGATGTATGTTCAACCTCAGGA
TCCACAAACTCGAGAACCGATGGATTTCTTCCGCAACACCCCGGTTGAAA
AGAAGCAAATGGTGCGAACATACGAGCGCTTCTCGCAGGTGATCTCCCAC
CTCTTGCAGCCCAACGGCAGGGTGCTGGTGGTGGGCGAATGGGGCGGCCG
TTCGGTTAAGGCGGAAACGGCGAACAGCAACGGGGTGGAAGATATTGACG
GTGTAGGAAACGATTACGGATTCTTCAACCGTGTGTCTGGTTTTGGGCAA
AACTCTTCACCCTCTTCGCCGCGGCGCGTTTTCAACCTGCACTTCTTCGT
CGAGGCTAGAACCCCCGGGGAAGAGCGAAAGCTCAAGAAATGGCAGAACC
GACCGGGTGCAAAGTGGATTGCCTTCGGTCCTATCCCTCCCCGGGCTCAC
GGCTGCAAAGAAGCCTACAGCTACGTTACCGGGAGTGAGGCGGGTGAGAG
AGCAGAGCAACGGCGGAAGCAAAAAAGAGCGCGTGGGAAGATAAGCAAGG
CCGCTGTCGTGGACGCCGCAGAGGGGGGCGTGGCAGAAGCGACAGAGTCA
ACGGCATCGAGCGGGGCGGGAGGGCTTATGTCGTACACGAGGTACGGCGA
GTGCCCGACGTGGTACGGCACGGGACGAATGTGCGGCTTGGACGTGCAGG
CAAGGCGTGTCGGTTCGTTCGAGTCTCTTCCGAAGAAGTTAAAGGAGAGA
GTGCTGCAGGTCGACCCCGACTTCGATGCGGGTCCTGCAGGCACTCTGGA
GGAGTGCAGGCTGCTCGCGGCACGGGAGCGGGACAAGAAGGAGGAACAGA
GGCGAAAAAAAAAATGGTCGCTACGACGGCCGTCTCTGCAAGGTTCCGCG
GGCAATGTGTAGGCGGAAACGGCGAACAGCAACGGGGTGGAAGATATTGA
CGGTGTAGGAAACGATTACGGATTCTTCAACCGTGTGTCTGGTTTTGGGC
AAAACTCTTCACCCTCTTCGCCGCGGCGCGTTTTCAACCTGCACTTCTTC
GTCGAGGCTAGAACCCCCGGGGAAGAGCGAAAGCTCAAGAAATGGCAGAA
CCGACCGGGTGCAAAGTGGATTGCCTTCGGTCCTATCCCTCCCCGGGCTC
ACGGCTGCAAAGAAGCCTACAGCTACGTTACCGGGAGTGAGGCGGGTGAG
AGAGCAGAGCAACGGCGGAAGCAAAAAAGAGCGCGTGGGAAGATAAGCAA
GGCCGCTGTCGTGGACGCCGCAGAGGGGGGCGTGGCAGAAGCGACAGAGT
CAACGGCATCGAGCGGGGCGGGAGGGCTTATGTCGTACACGAGGTACGGC
GAGTGCCCGACGTGGTACGGCACGGGACGAATGTGCGGCTTGGACGTGCA
GGCAAGGCGTGTCGGTTCGTTCGAGTCTCTTCCGAAGAAGTTAAAGGAGA
GAGTGCTGCAGGTCGACCCCGACTTCGATGCGGGTCCTGCAGGCACTCTG
GAGGAGTGCAGGCTGCTCGCGGCACGGGAGCGGGACAAGAAGGAGGAACA
GAGGCGAAAAAAAAAATGGTCGCTACGACGGCCGTCTCTGCAAGGTTCCG
CGGGCAATGTGTAG
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