mRNA_H-elongata_contig72172.14887.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig72172.14887.1
Unique NamemRNA_H-elongata_contig72172.14887.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig72172.14887.1 vs. uniprot
Match: A0A6H5JGR2_9PHAE (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGR2_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 3.430e-36
Identity = 63/87 (72.41%), Postives = 73/87 (83.91%), Query Frame = 1
Query:   37 ALLEHMKSVHQRFFCGVCLESRPLFFSEHEVFHGAAALRKHESRPDGGHPLCRFCSRRRFFDNAALYEHMTGTHINCHLCPEEHQQR 297
            AL+EH+K  HQRF C +CLE RPLF SE EVF  A+ LRKHE+R +GGHPLCRFC++R FFDN ALY+HMTGTHINCHLCPEE+Q R
Sbjct:  329 ALMEHLKDFHQRFLCELCLEGRPLFLSEQEVFT-ASGLRKHEARVEGGHPLCRFCNKR-FFDNTALYDHMTGTHINCHLCPEENQHR 413          
BLAST of mRNA_H-elongata_contig72172.14887.1 vs. uniprot
Match: A0A836C9D8_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9D8_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.450e-22
Identity = 50/78 (64.10%), Postives = 54/78 (69.23%), Query Frame = 1
Query:   64 HQRFFCGVCLESRPLFFSEHEVFHGAAALRKHESRPDGGHPLCRFCSRRRFFDNAALYEHMTGTHINCHLCPEEHQQR 297
            HQR +C +CLE RPLF  E E+F  AAALRKHE    GGHPLCRFC  R F D AALY HM G HI+CHLC  EH  R
Sbjct:  168 HQRHYCALCLEHRPLFPPEQELF-SAAALRKHEQGV-GGHPLCRFCGARHF-DAAALYRHMNGAHISCHLCAPEHAHR 242          
BLAST of mRNA_H-elongata_contig72172.14887.1 vs. uniprot
Match: D8LKN7_ECTSI (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKN7_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 6.910e-22
Identity = 45/79 (56.96%), Postives = 56/79 (70.89%), Query Frame = 1
Query:   31 IEALLEHMKSVHQRFFCGVCLESRPLFFSEHEVFHGAAALRKHESRPDGGHPLCRFCSRRRFFDNAALYEHMTGTHINC 267
            I AL+EHMK  HQRF C +CLE RPLF SE EVF  A+ LRKHE++ +GGHPLCRFC++R F     L +H+  +H  C
Sbjct:  308 IGALMEHMKGFHQRFLCQLCLEGRPLFLSEQEVFT-ASGLRKHEAKVEGGHPLCRFCNKRYFRGEPQLRDHLRTSHFLC 385          
BLAST of mRNA_H-elongata_contig72172.14887.1 vs. uniprot
Match: A0A7S3Y343_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y343_HETAK)

HSP 1 Score: 85.1 bits (209), Expect = 2.280e-17
Identity = 45/98 (45.92%), Postives = 58/98 (59.18%), Query Frame = 1
Query:    7 VCLPCQLPIEALLEHMKSVHQ-RFFCGVCLESRPLFFSEHEVFHGAAALRKHESRPDGGHPLCRFCSRRRFFDNAALYEHMTGTHINCHLCPEEHQQR 297
            VC   Q    AL EH++  H  R  C +C+E RP F  E E++    ALRKHE+   GGHPLC+FC + RF+D AAL+ HM+  H  C LC  E  +R
Sbjct:  119 VCFAPQPGAAALREHLRRQHGGRAHCALCVEHRPKFLQEQELYT-PQALRKHEAALAGGHPLCKFC-QCRFYDGAALFRHMSAAHQTCPLCGPEGAER 214          
BLAST of mRNA_H-elongata_contig72172.14887.1 vs. uniprot
Match: A0A482T1K3_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T1K3_9ARCH)

HSP 1 Score: 74.3 bits (181), Expect = 2.250e-13
Identity = 40/102 (39.22%), Postives = 55/102 (53.92%), Query Frame = 1
Query:   31 IEALLEHMKSVHQRF-FCGVCLESRPLFFSEHEVFHGAAALRKH------------ESRPDGGHPLCRFCSRRRFFDNAALYEHMTGTHINCHLCPEEHQQR 297
            ++ LL+H++  HQ    C +CLE RPLF SEHEVF  A   ++H             +  + GHP CR C +  FFD +ALY+HM   H  C LC + +  R
Sbjct:  260 MKHLLQHLQRDHQNMSMCTLCLEHRPLFISEHEVFFNAHKYKQHLHGNVTGGMQSKNNLYNLGHPECRLC-KENFFDLSALYKHMNVKHYTCTLCEQSYMFR 360          
BLAST of mRNA_H-elongata_contig72172.14887.1 vs. uniprot
Match: UPI001D3B9444 (uncharacterized protein n=1 Tax=Ogataea philodendri TaxID=1378263 RepID=UPI001D3B9444)

HSP 1 Score: 73.2 bits (178), Expect = 5.380e-13
Identity = 34/87 (39.08%), Postives = 50/87 (57.47%), Query Frame = 1
Query:   34 EALLEHMKSVHQRFFCGVCLESRPLFFSEHEVFHGAAALRKHESRPDG----GHPLCRFCSRRRFFDNAALYEHMTGTHINCHLCPE 282
            + L EH+ S H R FC VC   R  F SE  ++  +  L +H++R D     GHP+C+FC+ +RF+ +  LY HM   H  CH+C +
Sbjct:   98 KQLNEHVHSQHDRSFCPVCANHRRAFISELRLYT-SRQLHQHQARGDQDGFKGHPMCKFCTGKRFYSDDELYVHMRDKHEKCHICDQ 183          
BLAST of mRNA_H-elongata_contig72172.14887.1 vs. uniprot
Match: A0A0L8RPK2_SACEU (RING-type E3 ubiquitin transferase n=2 Tax=Saccharomyces TaxID=4930 RepID=A0A0L8RPK2_SACEU)

HSP 1 Score: 72.0 bits (175), Expect = 1.410e-12
Identity = 33/81 (40.74%), Postives = 46/81 (56.79%), Query Frame = 1
Query:   46 EHMKSVHQRFFCGVCLESRPLFFSEHEVFHGAAALRKHESRPDG----GHPLCRFCSRRRFFDNAALYEHMTGTHINCHLC 276
            EH+KS H R  C +C   +  F +E E+F     LR H+S+ +     GHP+C FCS +RF+ +  LY HM   H  CH+C
Sbjct:  174 EHLKSEHSRMICLICATHKHAFPAELEIF-AQNQLRNHQSKGNSEGFKGHPMCAFCSGKRFYSDDELYVHMRNQHEKCHIC 253          
BLAST of mRNA_H-elongata_contig72172.14887.1 vs. uniprot
Match: A0A1S7HTR5_9SACH (RING-type E3 ubiquitin transferase n=3 Tax=Zygosaccharomyces TaxID=4953 RepID=A0A1S7HTR5_9SACH)

HSP 1 Score: 71.6 bits (174), Expect = 1.930e-12
Identity = 34/81 (41.98%), Postives = 46/81 (56.79%), Query Frame = 1
Query:   46 EHMKSVHQRFFCGVCLESRPLFFSEHEVFHGAAALRKHESRPDG----GHPLCRFCSRRRFFDNAALYEHMTGTHINCHLC 276
            EH+K  H +  C +C   +  F SE +++     LR H+SR DG    GHP+C FCS RRF+ +  LY HM   H  CH+C
Sbjct:  176 EHLKDEHNKTICMICAMFKHAFPSELKIYT-PNQLRNHQSRGDGEGFKGHPMCAFCSGRRFYSDDELYLHMRDQHEKCHIC 255          
BLAST of mRNA_H-elongata_contig72172.14887.1 vs. uniprot
Match: J8PJG9_SACAR (RING-type E3 ubiquitin transferase n=1 Tax=Saccharomyces arboricola (strain H-6 / AS 2.3317 / CBS 10644) TaxID=1160507 RepID=J8PJG9_SACAR)

HSP 1 Score: 71.2 bits (173), Expect = 2.630e-12
Identity = 33/81 (40.74%), Postives = 46/81 (56.79%), Query Frame = 1
Query:   46 EHMKSVHQRFFCGVCLESRPLFFSEHEVFHGAAALRKHESRPDG----GHPLCRFCSRRRFFDNAALYEHMTGTHINCHLC 276
            EH+K+ H +  C +C   +  F SE E+F     LR H+SR +     GHP+C FCS +RF+ +  LY HM   H  CH+C
Sbjct:  170 EHLKTEHNKMICLICATHKHAFPSELEIFT-QNQLRNHQSRGNSEGFKGHPMCAFCSGKRFYSDDELYVHMRNQHEKCHIC 249          
BLAST of mRNA_H-elongata_contig72172.14887.1 vs. uniprot
Match: H2AT89_KAZAF (RING-type E3 ubiquitin transferase n=1 Tax=Kazachstania africana (strain ATCC 22294 / BCRC 22015 / CBS 2517 / CECT 1963 / NBRC 1671 / NRRL Y-8276) TaxID=1071382 RepID=H2AT89_KAZAF)

HSP 1 Score: 70.9 bits (172), Expect = 3.590e-12
Identity = 34/86 (39.53%), Postives = 48/86 (55.81%), Query Frame = 1
Query:   34 EALLEHMKSVHQRFFCGVCLESRPLFFSEHEVFHGAAALRKHESRPDG-----GHPLCRFCSRRRFFDNAALYEHMTGTHINCHLC 276
            + L  H+KS H +  C +C + +  F  E ++F     LR H+S+ D      GHPLC FCS RRF+ +  LY HM  +H  CH+C
Sbjct:  168 QKLQSHLKSEHNKSICMICAQHKHAFPIELKIFT-PNQLRNHQSKGDSTIGFKGHPLCAFCSGRRFYSDDELYLHMRESHEKCHIC 252          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72172.14887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JGR2_9PHAE3.430e-3672.41RING-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
A0A836C9D8_9STRA1.450e-2264.10RING-type E3 ubiquitin transferase n=1 Tax=Tribone... [more]
D8LKN7_ECTSI6.910e-2256.96RING-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
A0A7S3Y343_HETAK2.280e-1745.92Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A482T1K3_9ARCH2.250e-1339.22Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
UPI001D3B94445.380e-1339.08uncharacterized protein n=1 Tax=Ogataea philodendr... [more]
A0A0L8RPK2_SACEU1.410e-1240.74RING-type E3 ubiquitin transferase n=2 Tax=Sacchar... [more]
A0A1S7HTR5_9SACH1.930e-1241.98RING-type E3 ubiquitin transferase n=3 Tax=Zygosac... [more]
J8PJG9_SACAR2.630e-1240.74RING-type E3 ubiquitin transferase n=1 Tax=Sacchar... [more]
H2AT89_KAZAF3.590e-1239.53RING-type E3 ubiquitin transferase n=1 Tax=Kazachs... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72172contigH-elongata_contig72172:1597..2556 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.5
Seed ortholog evalue4.6e-19
Seed eggNOG ortholog2880.D8LKN7
Preferred nameZNF598
KEGG koko:K22381
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006325,GO:0006412,GO:0006414,GO:0006417,GO:0006464,GO:0006513,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016043,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0016740,GO:0019222,GO:0019538,GO:0019787,GO:0030163,GO:0031323,GO:0031326,GO:0032268,GO:0032446,GO:0034248,GO:0034641,GO:0034645,GO:0036205,GO:0036211,GO:0043021,GO:0043022,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0044877,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0051276,GO:0060255,GO:0061630,GO:0061659,GO:0065007,GO:0070647,GO:0071704,GO:0071840,GO:0072344,GO:0080090,GO:0097159,GO:0140096,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:2000112,GO:2000765
EggNOG free text desc.rescue of stalled ribosome
EggNOG OGsCOG5236@1,KOG2231@2759
EC2.3.2.27
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSingle-stranded nucleic acid binding R3H
Ec32 orthologEc-03_001000.1
Exons2
Model size300
Cds size300
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931122.59273-CDS-H-elongata_contig72172:1596..18051622931122.59273-CDS-H-elongata_contig72172:1596..1805Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72172 1597..1805 +
1691679707.3310332-CDS-H-elongata_contig72172:1596..18051691679707.3310332-CDS-H-elongata_contig72172:1596..1805Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72172 1597..1805 +
1622931122.6156254-CDS-H-elongata_contig72172:2465..25561622931122.6156254-CDS-H-elongata_contig72172:2465..2556Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72172 2466..2556 +
1691679707.3437319-CDS-H-elongata_contig72172:2465..25561691679707.3437319-CDS-H-elongata_contig72172:2465..2556Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72172 2466..2556 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72172.14887.1prot_H-elongata_contig72172.14887.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig72172 1597..2556 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig72172.14887.1

>prot_H-elongata_contig72172.14887.1 ID=prot_H-elongata_contig72172.14887.1|Name=mRNA_H-elongata_contig72172.14887.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
VYVCLPCQLPIEALLEHMKSVHQRFFCGVCLESRPLFFSEHEVFHGAAAL
RKHESRPDGGHPLCRFCSRRRFFDNAALYEHMTGTHINCHLCPEEHQQR*
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mRNA from alignment at H-elongata_contig72172:1597..2556+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig72172.14887.1 ID=mRNA_H-elongata_contig72172.14887.1|Name=mRNA_H-elongata_contig72172.14887.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=960bp|location=Sequence derived from alignment at H-elongata_contig72172:1597..2556+ (Himanthalia elongata Himel1 dioecious)
GTATACGTGTGCCTCCCTTGCCAACTGCCGATAGAGGCCCTTTTGGAACA CATGAAAAGCGTCCACCAGCGCTTCTTCTGCGGCGTCTGCTTGGAGAGCC GCCCTCTGTTCTTCTCCGAGCACGAGGTCTTTCACGGTGCCGCCGCCCTC CGGAAGCACGAGTCGAGGCCGGACGGAGGGCATCCTTTGTGTCGCTTCTG CTCTCGGCGGTAGGTAAAGGGAGGGAGTTGATATATAATTAAAGGGATGT CTGGGTTGGAGGGGCGCGTCCGGCGTTCTTGCTCTCGCATGGAGGAGGCG CCGATAATATACTCATCGGCATACATATAATTATTTTTATTTAAAAACAT ACGAACTCATTGAAACCCTCCTCCGAACATCCACGCCTTCTTAGCACCGT GCGAGGTGTAGTCCAGGGGACCAACTATCGTCATTTTTGAGATGGTACAT AACTCTTTCTCTTTTGAGCACAAAATCGTCACATATAATTAATCGTATTC CCCAAAATCAATGACGTCATCGGGTCGACGGTATAATGTCAGAAAGAAGT CCACCATTATCCTTACCACTTACATTATCCATAATCTGGGGACTATGACG CTAAGCTAGAGCTTAGAAAGTGGGCTATAAAGAGATAAGGTTTTGTTTTT GTTTTTTGTACAAAGTTCTCCGTACTGAACACCTGAGTCTGCACGTTTTT CGATTTTTTGTTGTACTGTTTTCCCCCTCCCCCTCCCCCCCAAACGCAGC GATGGGAAAAGTTAGTGAGTGGAGGGAAGGTGAGACGAAAAAGAAAAAAG CCTCCTTCCTTGACGAAAATTTTAGGAAAATCGATCGTATACCTCTTTTC TTCTTCTCGACGGCGCGAGCAGGTTCTTCGATAACGCGGCCCTGTACGAG CACATGACGGGCACACACATCAACTGCCACCTGTGCCCCGAGGAGCATCA ACAACGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig72172:1597..2556+

>mRNA_H-elongata_contig72172.14887.1 ID=mRNA_H-elongata_contig72172.14887.1|Name=mRNA_H-elongata_contig72172.14887.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig72172:1597..2556+ (Himanthalia elongata Himel1 dioecious)
GTATACGTGTGCCTCCCTTGCCAACTGCCGATAGAGGCCCTTTTGGAACA
CATGAAAAGCGTCCACCAGCGCTTCTTCTGCGGCGTCTGCTTGGAGAGCC
GCCCTCTGTTCTTCTCCGAGCACGAGGTCTTTCACGGTGCCGCCGCCCTC
CGGAAGCACGAGTCGAGGCCGGACGGAGGGCATCCTTTGTGTCGCTTCTG
CTCTCGGCGGTATACGTGTGCCTCCCTTGCCAACTGCCGATAGAGGCCCT
TTTGGAACACATGAAAAGCGTCCACCAGCGCTTCTTCTGCGGCGTCTGCT
TGGAGAGCCGCCCTCTGTTCTTCTCCGAGCACGAGGTCTTTCACGGTGCC
GCCGCCCTCCGGAAGCACGAGTCGAGGCCGGACGGAGGGCATCCTTTGTG
TCGCTTCTGCTCTCGGCGCAGGTTCTTCGATAACGCGGCCCTGTACGAGC
ACATGACGGGCACACACATCAACTGCCACCTGTGCCCCGAGGAGCATCAA
CAACGGTGACAGGTTCTTCGATAACGCGGCCCTGTACGAGCACATGACGG
GCACACACATCAACTGCCACCTGTGCCCCGAGGAGCATCAACAACGGTGA
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