mRNA_H-elongata_contig72083.14884.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig72083.14884.1
Unique NamemRNA_H-elongata_contig72083.14884.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig72083.14884.1 vs. uniprot
Match: D8LU98_ECTSI (VOC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LU98_ECTSI)

HSP 1 Score: 450 bits (1158), Expect = 6.140e-153
Identity = 227/334 (67.96%), Postives = 265/334 (79.34%), Query Frame = 1
Query:    1 GENPVHRRAALRNSFIFLAG--AGVAAAVRS-----ESAIAIGDLFEFKDQARFAQHATLQVPDMAAALKFYVQGVGMKVLRTRAGPQFNTTVVGFGPEPLQVPPDFVFGVSSMGSYGSHFTLELNSQE-----GREGEEDVEVYYDPGNGVQYLQIAVDTYRISSVIKAGGVVESGYGYLQVLAPGGLRLNLLSGERRDPPMFVAVKAKDLKRSIKWYTDVAGMTQLPCPLARAPGSPFEPDQPQNSVFMAYEGEGFGVLLLPTRRGEYINPGSAFSLSVLVEDVDTIADDLGGTVNVDVVRGRKRSISVPDPDGYLITFVDYGDWKNELASL 966
            G  P  R   LRNS  FLAG  A +AAA  +      +A AIGDL+EFKDQARFAQHAT+QVPDMAAALKFYV GVGMKV+RTRAGP FNTTVVGFGPE L+VPP FVFGVSS   YG HFTLELNSQ+       +GEEDV+ +YDPGNGVQ+LQIAVD+YRIS V+KAGG++ESGYGYLQVLAPGGLRL LLSG RRDPPMF+AVK KD+KRS++WYTDVAGMT+ P P AR  GSPFEP+QP  SVFMAYEGE FGV+L+P  +G+ INPGS  S++VL EDV+ IA+ LGG V+VD  RG  +S++V DPDGY + FV+Y DW+ +L  L
Sbjct:   76 GAEPTGRGDFLRNSAAFLAGGSAAIAAATTAGAGFPSAAEAIGDLYEFKDQARFAQHATVQVPDMAAALKFYVDGVGMKVIRTRAGPLFNTTVVGFGPEALEVPPSFVFGVSSTNGYGGHFTLELNSQKEEAGAAEDGEEDVDFFYDPGNGVQFLQIAVDSYRISQVVKAGGIIESGYGYLQVLAPGGLRLKLLSGSRRDPPMFLAVKVKDMKRSVQWYTDVAGMTKFPFPRAREAGSPFEPEQPAGSVFMAYEGEAFGVVLIPAAKGDQINPGSVVSVAVLAEDVEKIAESLGGKVSVDSARGGGKSVAVADPDGYGVKFVEYSDWRGQLPRL 409          
BLAST of mRNA_H-elongata_contig72083.14884.1 vs. uniprot
Match: A0A835YIX3_9STRA (VOC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIX3_9STRA)

HSP 1 Score: 253 bits (646), Expect = 2.410e-76
Identity = 149/297 (50.17%), Postives = 190/297 (63.97%), Query Frame = 1
Query:   88 ESAIAIGDLFEFKDQARFAQHATLQVPDMAAALKFYVQGVGMKVLRTRA--GPQFNTTVVGFGPEPLQVPPDFVFGVSSMGSYGSHFTLELNSQEGREGEEDVEVYYDPGNGVQYLQIAVDTYRISSVIKAGGVVESGYGYLQVLAPGGLRLNLLSGERRDPPMFVAVKAKDLKRSIKWYTDVAGMTQLPCPLAR-APGSPFEPDQPQNSVFMAYEGEGFGVLLLPTRRGEY--INPGSAFS-LSVLVEDVDTIADDLGGTVNVDVVRGRKRSISV-PDPDGYLITFVDYGDWKNEL 957
            E   AIG+L E   Q RF QHA + VPD+ AA++FY +G+GM+V+R+RA      NTT V +GPE L VP D+  GVSS  +YG HF+LEL        + ++  +YDPGNGVQY+QIAVDTYRIS VI AGG V  GY        GGL++NL SG RRDP MFVA+K  DLK+S++WYTDV GM+Q P P AR A  S FEP QP+ SVFM Y+ +G GVLL+P  + +   I  GSA+S L+VL  DV+     +G  +      G   S++V  DPDGY    V+Y D+  EL
Sbjct:   91 EGCNAIGELPETLSQKRFVQHAVVNVPDIEAAIRFYTEGLGMRVVRSRADTSANTNTTFVAYGPEQLTVPKDWAPGVSSFAAYGGHFSLELVGPLNPPADGELP-FYDPGNGVQYIQIAVDTYRISKVIAAGGEVIFGY--------GGLKINLFSGVRRDPMMFVALKVSDLKKSVQWYTDVLGMSQFPYPKAREAVDSVFEPKQPKGSVFMGYDEDGSGVLLIPKDKKDKAPIVVGSAYSKLAVLATDVEDEGKRVGA-MYAGKAPGTSTSVAVVADPDGYTTVLVEYDDFAREL 377          
BLAST of mRNA_H-elongata_contig72083.14884.1 vs. uniprot
Match: A0A4D9D405_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D405_9STRA)

HSP 1 Score: 198 bits (504), Expect = 1.600e-55
Identity = 106/230 (46.09%), Postives = 149/230 (64.78%), Query Frame = 1
Query:   82 RSESAIAIGDLFEFKDQARFAQHATLQVPDMAAALKFYVQGVGMKVLRTRAGPQFNTTVVGFGPEPLQVPPDFVFGVSSMGSYGSHFTLELNSQEGREGEEDVEVYYDPGNGVQYLQIAVDTYRISSVIKAGGVVESGYGYLQVLAPGGLRLNLLSGERRDPPMFVAVKAKDLKRSIKWYTDVAGMTQLPCPLARAPGSPFEPDQPQNSVFMAYEGEGFGVLLLPTRRGE 771
            R  +A AIG+L E+    RF QH  + VPDMAAAL FY+ G+ M+VLR+R     N+T VG+GPE L+ P  +  GVSS   YG+HF LELN  E  + EE      DPGN   YLQ+AV + R+S + +AGG ++S YG++ V +PGGLR  ++ G RRDP M +A+   D++++  +Y +  GM + P PL+R P S +EP QP+ S F+A+  +GFG+LLLP  + E
Sbjct:   54 RPNAANAIGELPEWASNPRFTQHLVINVPDMAAALSFYIDGLQMQVLRSRLVGGQNSTFVGYGPETLKTPKGWYPGVSSFSMYGAHFALELN--EVLKTEEGDTPVLDPGNAAAYLQLAVPSLRLSKLAEAGGKIKSAYGWVLVDSPGGLRHQVIVGMRRDPIMMLALNVPDVQKASHFYVNSLGMQEQPYPLSRIPESIYEPKQPKGSRFLAFNEDGFGILLLPLPKKE 281          
BLAST of mRNA_H-elongata_contig72083.14884.1 vs. uniprot
Match: A0A7S2UZ58_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZ58_9STRA)

HSP 1 Score: 192 bits (487), Expect = 4.560e-54
Identity = 106/253 (41.90%), Postives = 148/253 (58.50%), Query Frame = 1
Query:   85 SESAIAIGDLFEFKDQARFAQHATLQVPDMAAALKFYVQGVGMKVLRTRAGPQFNTTVVGFGPEPLQVPPDFVFGVSSMGSYGSHFTLELNSQEGREGEEDVEVYYDPGNGVQYLQIAVDTYRISSVIKAGGVVESGYGYLQVLAPGGLRLNLLSGERRDPPMFVAVKAKDLKRSIKWYTDVAGMTQLPCPLARAPGSPFEPDQPQNSVFMAYEGEGFGVLLLPTRRGEYINPGSAFS-LSVLVEDVDTIADD 840
            S+   +IG+L EF D A+F QH  ++V DM AAL+F ++G+ M VLRTR     N T VG+GPE L  P DFV GVSS   YG HF+LEL S      E+      +PG  +QY+Q+A        +IKAGG++  GYGY  V+AP GL   +   + RDP  ++A+K KD+K+SI +Y  V GM +L   + R   S FEP QP+ SV M Y      +LL+P  R + I  G+ F+ L+++   V+ I  +
Sbjct:   26 SQPGWSIGELPEFSDDAKFIQHMVVRVEDMDAALEFCLKGLQMSVLRTRLVDGINGTFVGYGPEQLSPPEDFVPGVSSFARYGGHFSLELVSPT-TPLEQRKPFANNPGTALQYIQLAAPNLSFGKLIKAGGIITGGYGYADVIAPFGLPFRVFVADTRDPAQYIAMKVKDMKKSIAYYEKVLGMKKLSYEMLRVKDSSFEPIQPKGSVVMGYNENSCNILLIPATRQDTIEVGNVFAKLAIVTNGVEDIGKE 277          
BLAST of mRNA_H-elongata_contig72083.14884.1 vs. uniprot
Match: A0A0G4EHT2_VITBC (VOC domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EHT2_VITBC)

HSP 1 Score: 187 bits (476), Expect = 6.890e-52
Identity = 120/305 (39.34%), Postives = 166/305 (54.43%), Query Frame = 1
Query:  103 IGDLFEFKDQARFAQHATLQVPDMAAALKFYVQGVGMKVLRTRAGPQF--NTTVVGFGPEPL---QVPPDFVFGVSSMGSYGSHFTLELNSQ----EGREGEEDVEVY---YDPGNGVQYLQIAVDTYRISSVIKAGGVVESGYGYLQVLAPGGLRLNLLSGERRDPPMFVAVKAKDLKRSIKWYTDVAGMTQLPCPLARA-PGSPFEPDQPQNSVFMAYEGEGFGVLLLPT----RRGEYINPGSAFS-LSVLVEDVDTIADDLGGTVNVDVVRGRKRSISVPDPDGYLITFVDYGDWKNELAS 963
            +G L E ++  R+ QHA + VP M  AL FY +G+GM+V+RTR  P    N T VG+GPE L   +V   F  G+SS   YG+HFTLEL  +    E +  +ED +     Y+PGNGVQ+LQIA+   R+S + + GG +   YG+++V APGGL L ++ GERRDP MF     KDL  +  +Y    GM +LP   AR  P SP EP QPQ S +M Y  + FG+LL+       +   I  GS F  L++L  +V      L       V        +  D  GY +  V+Y D++ EL+ 
Sbjct:    1 MGTLPETQNLERYIQHAVVNVPKMDDALNFYTRGLGMRVIRTRTNPAKTNNVTFVGYGPETLDLKRVENGFRPGISSYNEYGAHFTLELIEKRVPPELKSDDEDAQPVVQAYEPGNGVQFLQIALPFLRVSQLAETGGNIRRAYGWIEVDAPGGLPLRIIIGERRDPFMFACFTVKDLSAAKSFYETRLGMRELPYQKARYNPDSPLEPKQPQESAYMGYSEDTFGLLLVQQDKKIAKKTPIEVGSVFDKLAILSRNVVEEGPSLNAGFTGPVPGIGTNVAAFKDAQGYGLVLVEYDDFEKELSD 305          
BLAST of mRNA_H-elongata_contig72083.14884.1 vs. uniprot
Match: A0A7S2UPT2_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UPT2_9STRA)

HSP 1 Score: 115 bits (287), Expect = 3.430e-24
Identity = 87/301 (28.90%), Postives = 139/301 (46.18%), Query Frame = 1
Query:   88 ESAIAIGDLFEFKDQARFA--QHATLQVPDMA---AALKFYVQGVGMKVLRTRAGPQFNTTVVGFGPEPLQVPPDFVFGVSSMGSYGSHFTLELNSQEGREGEEDVEVYYD-----PGNGVQYLQIAVDTYRISSVIKAGGVVESGYGYLQVLAPGGLRLNLLSGERRDPPMFVAVKAKDLKRSIKWYTDVAGMTQLPCPLARAPGSP--FEPDQPQNSVFMAYEGEGFGVLLLPTRRGEYINPGSAF-SLSVLVEDVDTIADDLGGTVNVDVVRGRKRSISVPDPDGYLITFVDYGDWKN 951
            ES  A+G L E  D    A  Q  T+ V D++   + ++F  QG   ++LR +       T +GFGPE L  P DFV  VSS    G H ++ +     R   + ++  Y      PG  + +LQ+AV  YRIS ++  GG V   +G++ V++P GL +  + G   DP MFVA+   ++  S  +Y ++ G  +   P +R       FEP QP  SV+MA      GVLL+P  +   +     F S++++     + +                   S+ DP G  I+F+    ++ 
Sbjct:  138 ESLAAMGSLPELSDPNTNAILQGVTVSVADLSQQESMIQFLTQGFSFQILRQQTTDSITDTWLGFGPEQLSTPSDFVVPVSSFAKNGGHASIHI-----RYDAKTMDAPYRKGDPVPGTSIAFLQVAVPAYRISQMVANGGNVLDAFGFVNVVSPCGLPMRGIVGIWPDPIMFVAINCDNVATSRDFYENL-GFQEQDYPYSRPSNGAGQFEPMQPLRSVYMAQSSNCMGVLLVPAEKRNKVKRNPIFQSMNIVYTPSSSTSSS-----------SESSPPSLVDPSGNTISFMSTNTFEE 421          
BLAST of mRNA_H-elongata_contig72083.14884.1 vs. uniprot
Match: A0A5B8MYG2_9CHLO (Putative glyoxalase n=3 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MYG2_9CHLO)

HSP 1 Score: 111 bits (278), Expect = 4.970e-23
Identity = 90/282 (31.91%), Postives = 134/282 (47.52%), Query Frame = 1
Query:  139 FAQHATLQVPDMAAALKFYVQGVGMKVLRTRAGPQFNTTVVGFGPEPLQVPPDFVFGVSSMGSYGSHFTLELNSQEGREGEEDVEVYYDPGNGVQYLQIAV-DTYRISSVIKAGGVVESGYGYLQVLAPGGLRLNLLSGERRDPPMFVAVKAKDLKRSIKWYTDVAGMTQLPCPLARAPGSPFEPDQPQNSVFMAYEG--EGFGVLLLPTRRGEYINPGSAFSLSVLVEDVDTIADDLGG-------TVNVDVVRGRKRSISVPDPDGYLITFVDYGDWKNE 954
            F QHA L+V D+  ++KF+ QG+GMKV RTR     N   V FGPE L              + G  F LEL         E+     D  N  Q+ Q A+ ++ R++ V  +GG +  G+GY ++ AP G ++ +    RRDP   V V   D+  + K+Y  V GM        +  G  FEP + + SV M Y    E  G+LL+P    +  +   +  ++VL +DV+   + L         T  V    G K S++VP  +G  + FVDY D++ E
Sbjct:  154 FLQHAVLEVKDLDKSVKFWTQGLGMKVNRTRG----NQAFVSFGPETLTA------------ADGGKFALELV--------ENPSTTQD--NSGQFFQFALSNSLRVNRVANSGGDITFGFGYFEITAPDGYKVVVYIENRRDPFDLVGVYVNDVDAAAKYYERVFGMAADRSYGDKEVGR-FEPARIKGSVLMTYGAADENTGILLVPKSSSKEASSVQSIKIAVLDKDVNERKEKLVAAGLTPKFTGEVPGTGGTKVSLAVPR-EGVPLVFVDYNDFERE 407          
BLAST of mRNA_H-elongata_contig72083.14884.1 vs. uniprot
Match: A0A8J5XKT4_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XKT4_DIALT)

HSP 1 Score: 92.8 bits (229), Expect = 9.460e-17
Identity = 61/185 (32.97%), Postives = 94/185 (50.81%), Query Frame = 1
Query:  157 LQVPDMAAALKFYVQGVGMKVLRT-RAGPQ-FNTTVVGFGPEPLQVPPDFVFGVSSMGSYGSHFTLELNSQEGRE--------GEEDVEVYYDPGNGVQYLQIAVDTYRISSVIKAGGVVESGYGYLQVLAPGGLRLNLLSGERRDPPMFVAVKAKDLKRSIKWYTDVAGMTQLPCPLARAPGSP 681
            ++VPD+AAA +F++ G+ M  LR+ R GP      VVG+G E L                G  F+LEL     R            D E        + Y+Q+ V   RIS ++++GG +ES YGY++V +PGGL + +++  RRDP  FVA++  D++ +  +Y    GM ++P P  R    P
Sbjct:  131 VRVPDLAAARRFWLDGLKMSELRSSRVGPDGAEGIVVGYGREGLDEDD------------GGKFSLELVQASARAPAPARLALDAPDAEA----AGALLYVQLRVPNVRISGLVQSGGAIESAYGYVEVTSPGGLAVRVITAPRRDPVEFVALRVPDVEAAAAYYERAFGMRRIPSPPRRTERGP 299          
BLAST of mRNA_H-elongata_contig72083.14884.1 vs. uniprot
Match: A0A835Z3V5_9STRA (Metal ion binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3V5_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 5.600e-15
Identity = 78/288 (27.08%), Postives = 137/288 (47.57%), Query Frame = 1
Query:  139 FAQHATLQVPDMAAALKFYVQGVGMKVLRTRAGPQFNTTVVGFGPEPLQVPPDFVFGVSSMGSYGSHFTLELNSQEGREGEEDVEVYYDPGNGVQYLQIAVDTYRISSVIKA----GGVVESGY---GYLQVLAPGGLRLNLLSGERRDPPMFVAVKAKDLKRSIKWYTDVAGMTQLPCPLARAPGSPFEPDQPQNSVFMAYEGEGFGVLLLPTRRGEYINPGSAFS-LSVLVEDVDTIADDLGGTV--NVDVVR-----GRKRSISVPDPDGYLITFVDYGDWKNEL 957
            F QHA L+V D++A +KF+ +G+GMK++R R      T  + +G E L           S G  G +F LEL   +        +  Y  G+  +YL + +    ++  I+A    G +V   +    ++++ +P G+ + + SG RRDP   VA  + D+K +  +Y D   M +    L +  G P   D P     + Y+G    V+L+  +    +  G  F  +++L ++   +AD +  T    V+ V      G K + ++ DP+ + + FVDY D++ EL
Sbjct:   52 FIQHAVLKVNDLSANIKFWCEGLGMKLVRERTIDNVRTVFLAYGKETL-----------SSGD-GGYFALELTQAQ--------KPVYGVGSSFKYLGLTLPDKPMTLGIRATDAGGEIVPHWFLEKDFVEIKSPDGVPVRVKSGARRDPVTVVAFGSNDVKATQAYYKDTLRMKEQRGGLLKLLG-PLAGDGP----VLGYDGSDVSVVLV--KEDAPVTQGQIFDKIAILTKNTVGMADAISKTNYGKVEFVGEAPGIGTKVADTI-DPEFHDVVFVDYDDFEKEL 311          
BLAST of mRNA_H-elongata_contig72083.14884.1 vs. uniprot
Match: A0A6H5K0L5_9PHAE (VOC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0L5_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.630e-13
Identity = 91/327 (27.83%), Postives = 140/327 (42.81%), Query Frame = 1
Query:   58 GAGVAAAVRSESAIAIGDLFEFKDQARFAQHATLQVPDMAAALKFYVQGVGMKVLRTRAGPQFNTTVVGFGPEPLQVPPDFVFGVSSMGSYGSHFTLELNSQEGREGEEDVEVYYDP--------GNGVQYLQIAVDTYRISSVIK---AGG-VVESGYG---YLQVLAPGGLRLNLLSGERRDPPMFVAVKAKDLKRSIKWYTDVAGMTQLPCPLARAPGSPFEPDQPQNSVFMAYEGEGFGVLLLPTRRGEYINPGSAFSLSVLVEDVDTIADDL---GG--TVNVDVVR-------GRKRSISVPDPDGYLITFVDYGDWKNEL 957
            G G+A +  S +A   G          F QHA  +VPDM   +KF+ +G+GMKV+R R         V +G E LQ               G +F+LEL               YDP        G   QYL + + +   +   K   AGG VV   +G   +++  +P G  + +  G+RRDP   VA   +   ++  ++ +V GM +    L +  G P   D  + S    Y+  G  V L P    +    G+   L+VL +D   +AD +   GG  T   DV+        G K + ++ D +G  + FVDY D++ E+
Sbjct:   75 GVGIAVSPGSSTAADGGAPKGLPASGYFVQHAVFKVPDMDEEVKFFTEGLGMKVVRQREVNGVRNVFVAYGDESLQTKD------------GGYFSLEL--------------VYDPKAPPGYSTGGPFQYLGLTLSSTLATIAYKVDAAGGTVVPHWFGTKDFVEATSPSGTTVRVKEGKRRDPFSVVAFGTQFPDKATAYFHNVLGMKEQDAGLLKVLG-PLAGDALRLS---GYDKAGVSVALNPVD-SKIFEGGTFGKLAVLTKDTKALADKVSASGGAKTGGGDVLFAGEVPGIGTKVANTI-DFEGRGVVFVDYDDFEGEM 369          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72083.14884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D8LU98_ECTSI6.140e-15367.96VOC domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835YIX3_9STRA2.410e-7650.17VOC domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A4D9D405_9STRA1.600e-5546.09Uncharacterized protein n=3 Tax=Monodopsidaceae Ta... [more]
A0A7S2UZ58_9STRA4.560e-5441.90Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A0G4EHT2_VITBC6.890e-5239.34VOC domain-containing protein n=1 Tax=Vitrella bra... [more]
A0A7S2UPT2_9STRA3.430e-2428.90Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A5B8MYG2_9CHLO4.970e-2331.91Putative glyoxalase n=3 Tax=Chloropicon primus Tax... [more]
A0A8J5XKT4_DIALT9.460e-1732.97Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
A0A835Z3V5_9STRA5.600e-1527.08Metal ion binding protein n=1 Tax=Tribonema minus ... [more]
A0A6H5K0L5_9PHAE1.630e-1327.83VOC domain-containing protein n=2 Tax=Ectocarpus T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72083contigH-elongata_contig72083:456..1909 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score402.1
Seed ortholog evalue2e-109
Seed eggNOG ortholog2880.D8LU98
EggNOG free text desc.methylglyoxal metabolic process
EggNOG OGsCOG0346@1,KOG2943@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1454
Cds size798
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72083.14884.1prot_H-elongata_contig72083.14884.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig72083 627..1424 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931122.39196-UTR-H-elongata_contig72083:455..6261622931122.39196-UTR-H-elongata_contig72083:455..626Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig72083 456..626 +
1691679707.270682-UTR-H-elongata_contig72083:455..6261691679707.270682-UTR-H-elongata_contig72083:455..626Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig72083 456..626 +
1622931122.4164164-UTR-H-elongata_contig72083:1424..19091622931122.4164164-UTR-H-elongata_contig72083:1424..1909Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig72083 1425..1909 +
1691679707.294058-UTR-H-elongata_contig72083:1424..19091691679707.294058-UTR-H-elongata_contig72083:1424..1909Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig72083 1425..1909 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931122.4046693-CDS-H-elongata_contig72083:626..14241622931122.4046693-CDS-H-elongata_contig72083:626..1424Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72083 627..1424 +
1691679707.2824697-CDS-H-elongata_contig72083:626..14241691679707.2824697-CDS-H-elongata_contig72083:626..1424Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72083 627..1424 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig72083.14884.1

>prot_H-elongata_contig72083.14884.1 ID=prot_H-elongata_contig72083.14884.1|Name=mRNA_H-elongata_contig72083.14884.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=266bp
MAAALKFYVQGVGMKVLRTRAGPQFNTTVVGFGPEPLQVPPDFVFGVSSM
GSYGSHFTLELNSQEGREGEEDVEVYYDPGNGVQYLQIAVDTYRISSVIK
AGGVVESGYGYLQVLAPGGLRLNLLSGERRDPPMFVAVKAKDLKRSIKWY
TDVAGMTQLPCPLARAPGSPFEPDQPQNSVFMAYEGEGFGVLLLPTRRGE
YINPGSAFSLSVLVEDVDTIADDLGGTVNVDVVRGRKRSISVPDPDGYLI
TFVDYGDWKNELASL*
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mRNA from alignment at H-elongata_contig72083:456..1909+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig72083.14884.1 ID=mRNA_H-elongata_contig72083.14884.1|Name=mRNA_H-elongata_contig72083.14884.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1454bp|location=Sequence derived from alignment at H-elongata_contig72083:456..1909+ (Himanthalia elongata Himel1 dioecious)
GGGGAAAATCCTGTCCACAGGAGAGCCGCCCTGCGCAATTCTTTTATTTT TCTCGCGGGAGCTGGCGTGGCAGCTGCGGTGCGCTCAGAGTCTGCGATCG CCATTGGAGACCTATTCGAGTTTAAGGACCAAGCGCGGTTCGCCCAGCAC GCGACGCTTCAAGTGCCTGACATGGCAGCAGCGCTCAAGTTTTATGTCCA GGGCGTTGGAATGAAGGTTCTACGAACGCGAGCAGGGCCTCAATTCAACA CGACCGTCGTCGGGTTTGGGCCTGAGCCTCTACAAGTGCCCCCAGACTTT GTGTTTGGCGTCAGCTCGATGGGGTCGTACGGAAGCCATTTCACCCTGGA GCTCAACTCGCAGGAGGGGCGGGAGGGCGAGGAAGACGTCGAAGTCTACT ACGACCCGGGCAACGGTGTCCAGTACCTGCAGATTGCTGTCGACACGTAC CGAATTTCATCTGTTATCAAGGCGGGAGGTGTCGTTGAGTCTGGCTACGG TTACCTCCAGGTCCTTGCACCTGGTGGTTTGCGTCTGAATCTGTTGAGCG GCGAACGGAGAGATCCCCCGATGTTTGTCGCTGTCAAGGCGAAAGATCTC AAGAGGTCAATAAAATGGTATACGGACGTCGCAGGTATGACTCAGTTGCC GTGCCCCCTAGCGCGGGCGCCAGGATCGCCTTTTGAGCCAGACCAGCCTC AGAATAGCGTCTTCATGGCCTACGAGGGGGAAGGATTTGGCGTTTTGCTC CTGCCTACCAGGCGTGGAGAGTACATAAATCCCGGAAGCGCATTTTCTCT TTCTGTGCTGGTAGAAGATGTTGACACGATTGCCGATGACCTTGGGGGCA CGGTGAATGTAGACGTCGTTAGGGGGAGAAAGCGATCTATTTCTGTGCCC GATCCCGACGGTTACCTCATCACATTCGTAGATTACGGGGACTGGAAAAA TGAGCTTGCGAGCCTATAATAGCTGGCTGGGTTCAACGCACTTTGCGCGT TGTTGTTTTTCCGGTGCCGCCGAGGGATTGTCACACATTTGCAAGATAAC GATTCAGATCCACACAGTAATAATAATGATGTCGAGAGGCTCGTGGTAAC CATATAGTCTTAACGCCAGGATAGTACTTGTTGTGACTCTAGAGAGAAAG AGAGGATCCGCCGGTGAGGGGAATGCTTCCGCGTTAAAGGCGTGTGAGGC GGGGATGCCGACATTATCCTCGTAGAAAAACGGTCAAGGGTGTTCCTTGT GTTTTGTTTGGCTGTCTGAACTATTTTCTCGGGGGCGAAAAAATATGTTC AAGTGAAAGGGTTCATTCTGAGCGTGGGCCGTGGTGTACCAACTTGTGGA TAGCGAAGCGTAGAGCATTAGGGTAGCAAATACTTGTTTATCAGTAGGGA TTAAGACACTCGGTTTACCTGACTCATTGCACCAAACAGTGGACGAACCT ACCC
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Coding sequence (CDS) from alignment at H-elongata_contig72083:456..1909+

>mRNA_H-elongata_contig72083.14884.1 ID=mRNA_H-elongata_contig72083.14884.1|Name=mRNA_H-elongata_contig72083.14884.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1596bp|location=Sequence derived from alignment at H-elongata_contig72083:456..1909+ (Himanthalia elongata Himel1 dioecious)
ATGGCAGCAGCGCTCAAGTTTTATGTCCAGGGCGTTGGAATGAAGGTTCT
ACGAACGCGAGCAGGGCCTCAATTCAACACGACCGTCGTCGGGTTTGGGC
CTGAGCCTCTACAAGTGCCCCCAGACTTTGTGTTTGGCGTCAGCTCGATG
GGGTCGTACGGAAGCCATTTCACCCTGGAGCTCAACTCGCAGGAGGGGCG
GGAGGGCGAGGAAGACGTCGAAGTCTACTACGACCCGGGCAACGGTGTCC
AGTACCTGCAGATTGCTGTCGACACGTACCGAATTTCATCTGTTATCAAG
GCGGGAGGTGTCGTTGAGTCTGGCTACGGTTACCTCCAGGTCCTTGCACC
TGGTGGTTTGCGTCTGAATCTGTTGAGCGGCGAACGGAGAGATCCCCCGA
TGTTTGTCGCTGTCAAGGCGAAAGATCTCAAGAGGTCAATAAAATGGTAT
ACGGACGTCGCAGGTATGACTCAGTTGCCGTGCCCCCTAGCGCGGGCGCC
AGGATCGCCTTTTGAGCCAGACCAGCCTCAGAATAGCGTCTTCATGGCCT
ACGAGGGGGAAGGATTTGGCGTTTTGCTCCTGCCTACCAGGCGTGGAGAG
TACATAAATCCCGGAAGCGCATTTTCTCTTTCTGTGCTGGTAGAAGATGT
TGACACGATTGCCGATGACCTTGGGGGCACGGTGAATGTAGACGTCGTTA
GGGGGAGAAAGCGATCTATTTCTGTGCCCGATCCCGACGGTTACCTCATC
ACATTCGTAGATTACGGGGACTGGAAAAATGAGCTTGCGAGCCTATAAAT
GGCAGCAGCGCTCAAGTTTTATGTCCAGGGCGTTGGAATGAAGGTTCTAC
GAACGCGAGCAGGGCCTCAATTCAACACGACCGTCGTCGGGTTTGGGCCT
GAGCCTCTACAAGTGCCCCCAGACTTTGTGTTTGGCGTCAGCTCGATGGG
GTCGTACGGAAGCCATTTCACCCTGGAGCTCAACTCGCAGGAGGGGCGGG
AGGGCGAGGAAGACGTCGAAGTCTACTACGACCCGGGCAACGGTGTCCAG
TACCTGCAGATTGCTGTCGACACGTACCGAATTTCATCTGTTATCAAGGC
GGGAGGTGTCGTTGAGTCTGGCTACGGTTACCTCCAGGTCCTTGCACCTG
GTGGTTTGCGTCTGAATCTGTTGAGCGGCGAACGGAGAGATCCCCCGATG
TTTGTCGCTGTCAAGGCGAAAGATCTCAAGAGGTCAATAAAATGGTATAC
GGACGTCGCAGGTATGACTCAGTTGCCGTGCCCCCTAGCGCGGGCGCCAG
GATCGCCTTTTGAGCCAGACCAGCCTCAGAATAGCGTCTTCATGGCCTAC
GAGGGGGAAGGATTTGGCGTTTTGCTCCTGCCTACCAGGCGTGGAGAGTA
CATAAATCCCGGAAGCGCATTTTCTCTTTCTGTGCTGGTAGAAGATGTTG
ACACGATTGCCGATGACCTTGGGGGCACGGTGAATGTAGACGTCGTTAGG
GGGAGAAAGCGATCTATTTCTGTGCCCGATCCCGACGGTTACCTCATCAC
ATTCGTAGATTACGGGGACTGGAAAAATGAGCTTGCGAGCCTATAA
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