mRNA_H-elongata_contig72051.14881.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig72051.14881.1
Unique NamemRNA_H-elongata_contig72051.14881.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig72051.14881.1 vs. uniprot
Match: D8LQ38_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ38_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 1.480e-15
Identity = 31/43 (72.09%), Postives = 37/43 (86.05%), Query Frame = 1 
Query:   34 CAICLASYEEEEAIKVLPCGHKFHAECLDCWLERRTLCPMCKA 162
            CAICLA+Y+EEE IKVLPCGH FH++CLD WLE +  CP+CKA
Sbjct:  141 CAICLAAYQEEEVIKVLPCGHDFHSDCLDPWLEVKAECPLCKA 183
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BLAST of mRNA_H-elongata_contig72051.14881.1 vs. uniprot
Match: A0A0D2MUW8_9CHLO (E3 ubiquitin-protein ligase n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MUW8_9CHLO)

HSP 1 Score: 72.4 bits (176), Expect = 5.670e-14
Identity = 26/45 (57.78%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:   25 AGMCAICLASYEEEEAIKVLPCGHKFHAECLDCWLERRTLCPMCK 159
            A  C ICL SYE+ E +K LPCGH +H+EC+D WLE+  +CP+CK
Sbjct:  202 ADECTICLGSYEDGEVLKQLPCGHSYHSECIDAWLEKSAVCPLCK 246
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BLAST of mRNA_H-elongata_contig72051.14881.1 vs. uniprot
Match: A0A2V3IJU4_9FLOR (E3 ubiquitin-protein ligase RNF12 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJU4_9FLOR)

HSP 1 Score: 70.1 bits (170), Expect = 7.660e-14
Identity = 26/42 (61.90%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:   34 CAICLASYEEEEAIKVLPCGHKFHAECLDCWLERRTLCPMCK 159
            CAICL  YE+ E+++ L C H FHAEC+D WLE+R+LCP+CK
Sbjct:  104 CAICLGPYEQGESVRHLTCNHAFHAECVDIWLEKRSLCPICK 145
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BLAST of mRNA_H-elongata_contig72051.14881.1 vs. uniprot
Match: A0A2P6NUT9_9EUKA (RING finger protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NUT9_9EUKA)

HSP 1 Score: 71.6 bits (174), Expect = 1.910e-13
Identity = 25/42 (59.52%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:   34 CAICLASYEEEEAIKVLPCGHKFHAECLDCWLERRTLCPMCK 159
            C+IC+  YE E+ ++VLPCGH FH EC+D WL++R LCP+CK
Sbjct:   82 CSICIGDYEAEQMVRVLPCGHDFHVECIDEWLKQRLLCPLCK 123
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BLAST of mRNA_H-elongata_contig72051.14881.1 vs. uniprot
Match: A0A1Y1KE25_PHOPY (RING-type domain-containing protein n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1KE25_PHOPY)

HSP 1 Score: 68.6 bits (166), Expect = 2.990e-13
Identity = 24/47 (51.06%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:   19 DSAGMCAICLASYEEEEAIKVLPCGHKFHAECLDCWLERRTLCPMCK 159
            D  G C ICL  YE EE IK++PC H+FH+EC+  WL +   CP+C+
Sbjct:   66 DDGGKCDICLKEYEAEELIKIMPCKHRFHSECIHAWLSKTNSCPLCR 112
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BLAST of mRNA_H-elongata_contig72051.14881.1 vs. uniprot
Match: A0A6V7NGK8_ANACO (RING-type E3 ubiquitin transferase n=1 Tax=Ananas comosus var. bracteatus TaxID=296719 RepID=A0A6V7NGK8_ANACO)

HSP 1 Score: 68.2 bits (165), Expect = 3.880e-13
Identity = 27/46 (58.70%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:   28 GMCAICLASYEEEEAIKVLP-CGHKFHAECLDCWLERRTLCPMCKA 162
            G CA+CLA +EE EA++VLP C H FH  C+D WL  RT CP+C+A
Sbjct:   70 GTCAVCLADFEEGEAVRVLPECAHCFHVACIDAWLRARTSCPVCRA 115
[Close]
BLAST of mRNA_H-elongata_contig72051.14881.1 vs. uniprot
Match: A0A6N2BLZ6_SOLCI (RING-type domain-containing protein n=3 Tax=Solanum subgen. Lycopersicon TaxID=49274 RepID=A0A6N2BLZ6_SOLCI)

HSP 1 Score: 69.3 bits (168), Expect = 7.370e-13
Identity = 26/51 (50.98%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:   10 RDEDSAGMCAICLASYEEEEAIKVLPCGHKFHAECLDCWLERRTLCPMCKA 162
            +D++    CAICL  Y+EE+ I  L CGH+FHAEC++ WL+R+  CP C+A
Sbjct:  177 KDDEEQDACAICLLEYKEEDNIGTLQCGHEFHAECINKWLQRKKSCPFCRA 227
[Close]
BLAST of mRNA_H-elongata_contig72051.14881.1 vs. uniprot
Match: A0A7J8LRP8_9ROSI (RING-type domain-containing protein n=1 Tax=Gossypium lobatum TaxID=34289 RepID=A0A7J8LRP8_9ROSI)

HSP 1 Score: 65.1 bits (157), Expect = 1.800e-12
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:   19 DSAGMCAICLASYEEEEAIKVLPCGHKFHAECLDCWL-ERRTLCPMCK 159
            D+   C ICLA YEEEE I+VLPC H+FH  C+D WL E   +CP+C+
Sbjct:   29 DTVDQCHICLAEYEEEEKIRVLPCQHEFHMSCVDKWLKEIHGVCPLCR 76
[Close]
BLAST of mRNA_H-elongata_contig72051.14881.1 vs. uniprot
Match: UPI0010A2D0AE (RING-H2 finger protein ATL20-like n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A2D0AE)

HSP 1 Score: 67.8 bits (164), Expect = 2.200e-12
Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    7 QRDEDSAGMCAICLASYEEEEAIKVLPCGHKFHAECLDCWLERRTLCPMCK 159
            Q ++D   +C ICLA Y E+E +++LPC H FH EC+D WL   + CP+CK
Sbjct:  167 QNNQDEHSVCFICLAKYAEKELVRILPCSHMFHLECVDKWLRIASSCPLCK 217
[Close]
BLAST of mRNA_H-elongata_contig72051.14881.1 vs. uniprot
Match: A0A6P5G9T4_ANACO (RING-type E3 ubiquitin transferase n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5G9T4_ANACO)

HSP 1 Score: 66.2 bits (160), Expect = 2.380e-12
Identity = 26/44 (59.09%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:   34 CAICLASYEEEEAIKVLP-CGHKFHAECLDCWLERRTLCPMCKA 162
            CA+CLA +EE EA++VLP C H FH  C+D WL  RT CP+C+A
Sbjct:   76 CAVCLADFEEGEAVRVLPECAHCFHVACIDAWLRARTSCPVCRA 119
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig72051.14881.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ38_ECTSI1.480e-1572.09RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A0D2MUW8_9CHLO5.670e-1457.78E3 ubiquitin-protein ligase n=1 Tax=Monoraphidium ... [more]
A0A2V3IJU4_9FLOR7.660e-1461.90E3 ubiquitin-protein ligase RNF12 n=1 Tax=Gracilar... [more]
A0A2P6NUT9_9EUKA1.910e-1359.52RING finger protein n=1 Tax=Planoprotostelium fung... [more]
A0A1Y1KE25_PHOPY2.990e-1351.06RING-type domain-containing protein n=1 Tax=Photin... [more]
A0A6V7NGK8_ANACO3.880e-1358.70RING-type E3 ubiquitin transferase n=1 Tax=Ananas ... [more]
A0A6N2BLZ6_SOLCI7.370e-1350.98RING-type domain-containing protein n=3 Tax=Solanu... [more]
A0A7J8LRP8_9ROSI1.800e-1256.25RING-type domain-containing protein n=1 Tax=Gossyp... [more]
UPI0010A2D0AE2.200e-1249.02RING-H2 finger protein ATL20-like n=1 Tax=Prosopis... [more]
A0A6P5G9T4_ANACO2.380e-1259.09RING-type E3 ubiquitin transferase n=1 Tax=Ananas ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig72051contigH-elongata_contig72051:2365..2982 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.4
Seed ortholog evalue1.9e-12
Seed eggNOG ortholog2880.D8LQ38
Preferred nameTTC3
KEGG koko:K15712
GOsGO:0000209,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005773,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010721,GO:0010769,GO:0010771,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019941,GO:0022008,GO:0022603,GO:0022604,GO:0030154,GO:0030163,GO:0031974,GO:0031981,GO:0032446,GO:0032501,GO:0032502,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0048519,GO:0048523,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051128,GO:0051129,GO:0051239,GO:0051241,GO:0051603,GO:0051960,GO:0051961,GO:0060284,GO:0065007,GO:0070013,GO:0070647,GO:0070936,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:2000026
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsKOG0800@1,KOG0800@2759
EC2.3.2.27
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-26_006260.1
Exons2
Model size165
Cds size135
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig72051.14881.1prot_H-elongata_contig72051.14881.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig72051 2395..2982 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931121.9397163-UTR-H-elongata_contig72051:2364..23941622931121.9397163-UTR-H-elongata_contig72051:2364..2394Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig72051 2365..2394 +
1691679707.1631916-UTR-H-elongata_contig72051:2364..23941691679707.1631916-UTR-H-elongata_contig72051:2364..2394Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig72051 2365..2394 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931122.054831-CDS-H-elongata_contig72051:2394..24361622931122.054831-CDS-H-elongata_contig72051:2394..2436Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72051 2395..2436 +
1691679707.1751535-CDS-H-elongata_contig72051:2394..24361691679707.1751535-CDS-H-elongata_contig72051:2394..2436Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72051 2395..2436 +
1622931122.0680714-CDS-H-elongata_contig72051:2889..29821622931122.0680714-CDS-H-elongata_contig72051:2889..2982Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72051 2890..2982 +
1691679707.1828797-CDS-H-elongata_contig72051:2889..29821691679707.1828797-CDS-H-elongata_contig72051:2889..2982Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig72051 2890..2982 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig72051.14881.1

>prot_H-elongata_contig72051.14881.1 ID=prot_H-elongata_contig72051.14881.1|Name=mRNA_H-elongata_contig72051.14881.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=45bp
MCAICLASYEEEEAIKVLPCGHKFHAECLDCWLERRTLCPMCKA*
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mRNA from alignment at H-elongata_contig72051:2365..2982+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig72051.14881.1 ID=mRNA_H-elongata_contig72051.14881.1|Name=mRNA_H-elongata_contig72051.14881.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=618bp|location=Sequence derived from alignment at H-elongata_contig72051:2365..2982+ (Himanthalia elongata Himel1 dioecious)
AGCTCGCAGCGAGATGAAGACAGCGCGGGCATGTGCGCCATCTGCCTAGC
TTCATACGAGGAAGAAGAAGCGGTGTGTAGCTTACCGAGTAGATGGGATA
ACAACTTGCTCGTACGTGCTGACCGTGTCGATCCTCCAACTAAGAGTGGG
CACTTCGCGGAAGTCTTTTAAGCATGTTTTTGACTTGGTATTGGAATCAG
TTCTGAAGTTGCATCGCGATAATAAATCGTGGGTGTGAACCGGGTATAGA
TGGGCTGATCACTTGAGTCCGTAGGTGGGATTGGTAGCCTGGCACGGTGA
AGGGTATTATATATCCCGTCAACAGAAAGTGATGGCCATCATAATATAAC
AAAAAGTATCGCTATACACACTACGTGGTCGTCCGCATTTGACATGATTG
GCACCACTTTAGCGCGGACCCTGTCTTTATAACTGACGGAAATAAACGGC
AGCGTATTGTAGTGCATGACTTTGTGCTTGTGCTCTTACTTTACAACTAA
CTCCCTTTTGCACGGTCCGTTACAGATCAAGGTGCTTCCCTGTGGACACA
AGTTTCACGCTGAGTGTCTAGACTGCTGGCTGGAGAGGAGAACGCTGTGT
CCTATGTGCAAGGCATGA
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Coding sequence (CDS) from alignment at H-elongata_contig72051:2365..2982+

>mRNA_H-elongata_contig72051.14881.1 ID=mRNA_H-elongata_contig72051.14881.1|Name=mRNA_H-elongata_contig72051.14881.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=270bp|location=Sequence derived from alignment at H-elongata_contig72051:2365..2982+ (Himanthalia elongata Himel1 dioecious)
ATGTGCGCCATCTGCCTAGCTTCATACGAGGAAGAAGAAGCGATGTGCGC
CATCTGCCTAGCTTCATACGAGGAAGAAGAAGCGATCAAGGTGCTTCCCT
GTGGACACAAGTTTCACGCTGAGTGTCTAGACTGCTGGCTGGAGAGGAGA
ACGCTGTGTCCTATGTGCAAGGCATGAATCAAGGTGCTTCCCTGTGGACA
CAAGTTTCACGCTGAGTGTCTAGACTGCTGGCTGGAGAGGAGAACGCTGT
GTCCTATGTGCAAGGCATGA
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