mRNA_H-elongata_contig7205.14880.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig7205.14880.1
Unique NamemRNA_H-elongata_contig7205.14880.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig7205.14880.1 vs. uniprot
Match: A0A6H5JAE9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAE9_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 3.190e-17
Identity = 56/100 (56.00%), Postives = 70/100 (70.00%), Query Frame = 3 
Query:  966 LEFDDDDG--------VARRSGICDGDIEGDDAFVVAAQKKKLSSWLSSLEIRPSDALRYADNLVADGFDSGEALKGVREDDLIQYGMKKGHARLVVRTL 1241
            L+F D+ G        VA  +G  DG  +G +A VV    ++L++WLS L+IR  DA RYA  LVADGFDS EAL+GVRE++L+QYGMKKGHARLVVR L
Sbjct:  415 LDFGDETGDQHTTSAAVANGTGGNDGAEDGGEAVVV----QRLATWLSGLKIREPDASRYAGRLVADGFDSEEALRGVREEELLQYGMKKGHARLVVRLL 510
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BLAST of mRNA_H-elongata_contig7205.14880.1 vs. uniprot
Match: D8LG39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG39_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 2.760e-15
Identity = 45/64 (70.31%), Postives = 54/64 (84.38%), Query Frame = 3 
Query: 1050 AAQKKKLSSWLSSLEIRPSDALRYADNLVADGFDSGEALKGVREDDLIQYGMKKGHARLVVRTL 1241
            AA  ++L++WLS L+IR  DA RYA  LVADGFDS EAL+GVRE++L+QYGMKKGHARLVVR L
Sbjct:  821 AAVVERLAAWLSGLKIREPDASRYAGRLVADGFDSEEALRGVREEELLQYGMKKGHARLVVRLL 884
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BLAST of mRNA_H-elongata_contig7205.14880.1 vs. uniprot
Match: A0A7S2BLB3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BLB3_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.270e-8
Identity = 36/61 (59.02%), Postives = 42/61 (68.85%), Query Frame = 3 
Query: 1068 LSSWL-SSLEIRPSDALRYADNLVADGFDSGEALKGVREDDLIQYGMKKGHARLVVRTLAR 1247
            LS WL +S  IR  DA RYA  LV DGFD   AL+   EDDLI YG K+GHARLV+R L++
Sbjct:   68 LSRWLETSCHIRSVDAERYAKLLVDDGFDCIHALEMTSEDDLIGYGFKRGHARLVLRELSK 128
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig7205.14880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JAE9_9PHAE3.190e-1756.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LG39_ECTSI2.760e-1570.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2BLB3_9STRA1.270e-859.02Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig7205contigH-elongata_contig7205:139..3065 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.0
Seed ortholog evalue6.8e-16
Seed eggNOG ortholog2880.D8LG39
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat
Ec32 orthologEc-11_002050.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size2316
Cds size1248
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig7205.14880.1prot_H-elongata_contig7205.14880.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig7205 153..2011 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931121.8375397-UTR-H-elongata_contig7205:138..1521622931121.8375397-UTR-H-elongata_contig7205:138..152Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7205 139..152 +
1691679707.116273-UTR-H-elongata_contig7205:138..1521691679707.116273-UTR-H-elongata_contig7205:138..152Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7205 139..152 +
1622931121.8972216-UTR-H-elongata_contig7205:2011..30651622931121.8972216-UTR-H-elongata_contig7205:2011..3065Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7205 2012..3065 +
1691679707.1523626-UTR-H-elongata_contig7205:2011..30651691679707.1523626-UTR-H-elongata_contig7205:2011..3065Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig7205 2012..3065 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931121.8535717-CDS-H-elongata_contig7205:152..3161622931121.8535717-CDS-H-elongata_contig7205:152..316Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7205 153..316 +
1691679707.127692-CDS-H-elongata_contig7205:152..3161691679707.127692-CDS-H-elongata_contig7205:152..316Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7205 153..316 +
1622931121.8678377-CDS-H-elongata_contig7205:633..16151622931121.8678377-CDS-H-elongata_contig7205:633..1615Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7205 634..1615 +
1691679707.1354196-CDS-H-elongata_contig7205:633..16151691679707.1354196-CDS-H-elongata_contig7205:633..1615Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7205 634..1615 +
1622931121.8811285-CDS-H-elongata_contig7205:1909..20111622931121.8811285-CDS-H-elongata_contig7205:1909..2011Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7205 1910..2011 +
1691679707.143168-CDS-H-elongata_contig7205:1909..20111691679707.143168-CDS-H-elongata_contig7205:1909..2011Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig7205 1910..2011 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig7205.14880.1

>prot_H-elongata_contig7205.14880.1 ID=prot_H-elongata_contig7205.14880.1|Name=mRNA_H-elongata_contig7205.14880.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=416bp
MTGGDTLSEEEDEEKWDPQWTRFRRRQALARKEEKETEGLGRRRRRGAWG
VTAQRRDEDEAREIVVAANDKLREVTKERDMHREKTLSLQRALEAVLKEC
ETMAATATSVAEKNSVAAEGAIAMGDDEGAETSRGPASEPDSVSIPAGDV
PTSVGRETRTILESRAAQRKSDPGLNVARIADTKDPLERVGDLSASSEIS
ESETDAEVDDDVNEDIISVHGSGDVNDDDDAVTTVTTENTDNTPVGIGEA
RGGVRFSNSDMPQHSLLSFVEDVDDTPRDGGGGGGTTSSGDAAKQSSWGR
APEAKSSSRGGGDSGNLLEFDDDDGVARRSGICDGDIEGDDAFVVAAQKK
KLSSWLSSLEIRPSDALRYADNLVADGFDSGEALKGVREDDLIQYGMKKG
HARLVVRTLARGFRL*
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mRNA from alignment at H-elongata_contig7205:139..3065+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig7205.14880.1 ID=mRNA_H-elongata_contig7205.14880.1|Name=mRNA_H-elongata_contig7205.14880.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2927bp|location=Sequence derived from alignment at H-elongata_contig7205:139..3065+ (Himanthalia elongata Himel1 dioecious)
AGGTCCCGTTCGAGATGACTGGGGGAGACACCTTGAGCGAGGAAGAAGAT
GAGGAGAAGTGGGATCCTCAGTGGACGCGGTTCAGAAGACGGCAGGCGTT
GGCGCGGAAAGAGGAAAAGGAGACGGAGGGGCTGGGGCGTCGAAGGAGGA
GAGGGGCGTGGGGCGTCACCGCCCAGAGGTGCGGAGTCGCTGCTTCGCTG
CTCTCTACCGACCTCACTATGCACTGCAGATGGAAACTAACTCCCCCGCT
CGTACGTGCTTGCGCGCGTGCGGGATTTCGATGGCCTCTTGGATCGGCAA
TAAGAACCCGATGATTATTATTATTATTTTTTATAGTGTGTCCGTGTATT
TTTCTTGTTTCCTATTTTCTGCGTGGCGCTTCGTATTCGATGGCAAGGCT
CCCTCGTCTCCTTGATCTATCTCTTGAAGCCACCCTTCGTCCCGCCGCCC
GTCCGTGCGTTCTTTCGTCTCGTTATCCTTGGCCTCTACTGCTAGGCGCG
ACGAAGATGAGGCGCGCGAGATCGTGGTGGCCGCGAACGATAAGCTCCGA
GAGGTTACCAAAGAGCGTGATATGCATCGCGAGAAGACCTTGTCGCTCCA
ACGAGCGCTCGAGGCCGTCCTCAAAGAATGCGAGACGATGGCCGCCACCG
CCACGTCTGTTGCAGAAAAAAATTCAGTGGCAGCGGAAGGAGCTATAGCG
ATGGGAGACGATGAGGGTGCGGAGACGTCAAGAGGGCCGGCGTCGGAGCC
TGATTCGGTGTCGATTCCAGCAGGAGACGTCCCGACGTCGGTCGGGCGTG
AGACGAGAACGATACTAGAGTCCCGGGCGGCCCAGCGGAAATCAGATCCC
GGGTTGAATGTTGCCCGCATTGCAGACACAAAGGACCCATTGGAACGTGT
TGGCGACTTGAGCGCGAGCTCGGAGATTTCCGAGTCGGAGACCGACGCGG
AAGTAGACGATGACGTCAACGAGGACATCATCAGTGTTCACGGCAGTGGC
GATGTAAACGACGACGACGATGCCGTGACAACTGTAACGACCGAGAACAC
CGACAACACGCCAGTTGGTATCGGGGAAGCCCGAGGAGGCGTGCGTTTCT
CTAATAGCGACATGCCGCAACATTCTTTGCTATCCTTCGTCGAGGATGTT
GACGATACACCTCGCGACGGCGGCGGCGGCGGCGGTACCACTTCCTCGGG
GGACGCGGCGAAGCAGAGTAGTTGGGGTCGTGCGCCTGAAGCCAAATCAT
CTAGCCGGGGAGGGGGCGATTCGGGCAATTTGTTGGAGTTTGACGATGAT
GACGGCGTTGCTCGTCGCTCAGGCATTTGCGATGGTGATATCGAAGGAGA
CGACGCCTTTGTCGTTGCCGCTCAGAAAAAGAAGCTCTCCTCATGGCTGT
CGAGTCTGGAGATTCGACCATCGGACGCGTTGCGGTACGCAGACAACCTG
GTCGCAGACGGGTTCGATAGCGGAGAGGTAAGTGGGGTGGGGGAGTGAGG
GGGGGCACACTCCAATCAATGGTTGTCTCGTTACAGAATACGGTGGGTCG
CGCTGTGTGGAGGCGTTTGTCTCGTAGGTCATTGCCTCGCCATTTTTACT
TGCTCGAGAATGAAGATTTACTACTGTTCAGTTCCCACAGAGAGCCATCC
ATGCTCCCGACGACGATGTCTCCCTTTACCCCACGAGGCCTAATCCCCCC
CCCCCTCCCGCCGTCTCGCTTCCTTACCACTCGTGCGTGCAATCAATGTG
GTGGTGATTTATACCGTACAGGCCTTGAAGGGTGTCCGCGAGGACGATCT
GATCCAGTACGGCATGAAGAAGGGCCACGCGAGACTCGTTGTTCGTACCC
TTGCGAGAGGCTTCAGGCTTTAGACGTCATAGTCTACGACAGTGGTGCAC
GGTACGCAGGAAGAGAAAGCCAAGGGAACATTACAGCTCTTGCCGGGGCC
CTTTGAAAAAATCAGCCTATTTTGTTTTGTAAACTGGGTTTATATGAGTG
TGTTCGTACGTGTCTGGCGGAGTTCTTGTCGTGGGAGATGTTGCCATAGT
CTAATATGGAGAACAATCAACCTTAAATGTATTTACGAGGAAGCGTATTG
TATGTTCTGCTCAGCCAGTCAAAAATGTACCATAAATGAAACGTTAGCAA
CCAACGTGTGGTCCGTTTGTGTACTCCCTCCGCGTACAAAAGAAGGTGCA
TAAGTAGTTGGACAGGGTTTCCATACCAGCGATCTAGTTAGTCCGAAATA
TCCGCAATGAAAAACTCAGAGCGGGCGTTTGTTAGTTTTATTAGCGTGTG
TTTTCGGGGTTTGTTGATCAGACCATCGCATTACTTTACGAAGATCGCGG
TGTTGGAACCAAACAACCGTTCCATGTGTCTCGTGTATCAGGTTCGGCGA
ATTTGGCATTGCCAGTCAGCCGAACGGGCTGCTCCCAGGATGTGAGCCGT
GTTGGTCAAAATAAGTTTCGTGCGTTAGACAGACTGAGCCCTTTCGGTGG
ACTACTTGTAGCTCGGGCCAAAATGGTTGGGAAGAAGGTTGGCTACGATC
GGGGACAAGATGCTCGCGCCACAACGGAGTCTGATCATGCGATTGGATTG
AATTATTTCAACCAAGGCGGGACTCTCATTTTGGAAAGGAAATTATTTTG
CCTAGAGAGAGGTCAAGACGAGTATTCGCGTTTTCATCACAACGAAGTGT
AAATAAATGAGAGAAAAAGCCTCCTAAAATAGTGTGTTATTAAAATACTG
CTGCTGCAGTGTTATTTACGTCTTCCGGTAAGCGGCCTGTCTCTCCGTAT
GCAAGGTCGTGAGTGCGCGATCGGGCGTTATATTGATAAATTCACCACAC
ATTATATGCTTCGTGCTTGCAAATCAAGGGAAAGCTGTGCACGCTATTTT
TTATGGCAACTGCTCTAGACATTCTGG
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Coding sequence (CDS) from alignment at H-elongata_contig7205:139..3065+

>mRNA_H-elongata_contig7205.14880.1 ID=mRNA_H-elongata_contig7205.14880.1|Name=mRNA_H-elongata_contig7205.14880.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2496bp|location=Sequence derived from alignment at H-elongata_contig7205:139..3065+ (Himanthalia elongata Himel1 dioecious)
ATGACTGGGGGAGACACCTTGAGCGAGGAAGAAGATGAGGAGAAGTGGGA
TCCTCAGTGGACGCGGTTCAGAAGACGGCAGGCGTTGGCGCGGAAAGAGG
AAAAGGAGACGGAGGGGCTGGGGCGTCGAAGGAGGAGAGGGGCGTGGGGC
GTCACCGCCCAGAGATGACTGGGGGAGACACCTTGAGCGAGGAAGAAGAT
GAGGAGAAGTGGGATCCTCAGTGGACGCGGTTCAGAAGACGGCAGGCGTT
GGCGCGGAAAGAGGAAAAGGAGACGGAGGGGCTGGGGCGTCGAAGGAGGA
GAGGGGCGTGGGGCGTCACCGCCCAGAGGCGCGACGAAGATGAGGCGCGC
GAGATCGTGGTGGCCGCGAACGATAAGCTCCGAGAGGTTACCAAAGAGCG
TGATATGCATCGCGAGAAGACCTTGTCGCTCCAACGAGCGCTCGAGGCCG
TCCTCAAAGAATGCGAGACGATGGCCGCCACCGCCACGTCTGTTGCAGAA
AAAAATTCAGTGGCAGCGGAAGGAGCTATAGCGATGGGAGACGATGAGGG
TGCGGAGACGTCAAGAGGGCCGGCGTCGGAGCCTGATTCGGTGTCGATTC
CAGCAGGAGACGTCCCGACGTCGGTCGGGCGTGAGACGAGAACGATACTA
GAGTCCCGGGCGGCCCAGCGGAAATCAGATCCCGGGTTGAATGTTGCCCG
CATTGCAGACACAAAGGACCCATTGGAACGTGTTGGCGACTTGAGCGCGA
GCTCGGAGATTTCCGAGTCGGAGACCGACGCGGAAGTAGACGATGACGTC
AACGAGGACATCATCAGTGTTCACGGCAGTGGCGATGTAAACGACGACGA
CGATGCCGTGACAACTGTAACGACCGAGAACACCGACAACACGCCAGTTG
GTATCGGGGAAGCCCGAGGAGGCGTGCGTTTCTCTAATAGCGACATGCCG
CAACATTCTTTGCTATCCTTCGTCGAGGATGTTGACGATACACCTCGCGA
CGGCGGCGGCGGCGGCGGTACCACTTCCTCGGGGGACGCGGCGAAGCAGA
GTAGTTGGGGTCGTGCGCCTGAAGCCAAATCATCTAGCCGGGGAGGGGGC
GATTCGGGCAATTTGTTGGAGTTTGACGATGATGACGGCGTTGCTCGTCG
CTCAGGCATTTGCGATGGTGATATCGAAGGAGACGACGCCTTTGTCGTTG
CCGCTCAGAAAAAGAAGCTCTCCTCATGGCTGTCGAGTCTGGAGATTCGA
CCATCGGACGCGTTGCGGTACGCAGACAACCTGGTCGCAGACGGGTTCGA
TAGCGGAGAGGCGCGACGAAGATGAGGCGCGCGAGATCGTGGTGGCCGCG
AACGATAAGCTCCGAGAGGTTACCAAAGAGCGTGATATGCATCGCGAGAA
GACCTTGTCGCTCCAACGAGCGCTCGAGGCCGTCCTCAAAGAATGCGAGA
CGATGGCCGCCACCGCCACGTCTGTTGCAGAAAAAAATTCAGTGGCAGCG
GAAGGAGCTATAGCGATGGGAGACGATGAGGGTGCGGAGACGTCAAGAGG
GCCGGCGTCGGAGCCTGATTCGGTGTCGATTCCAGCAGGAGACGTCCCGA
CGTCGGTCGGGCGTGAGACGAGAACGATACTAGAGTCCCGGGCGGCCCAG
CGGAAATCAGATCCCGGGTTGAATGTTGCCCGCATTGCAGACACAAAGGA
CCCATTGGAACGTGTTGGCGACTTGAGCGCGAGCTCGGAGATTTCCGAGT
CGGAGACCGACGCGGAAGTAGACGATGACGTCAACGAGGACATCATCAGT
GTTCACGGCAGTGGCGATGTAAACGACGACGACGATGCCGTGACAACTGT
AACGACCGAGAACACCGACAACACGCCAGTTGGTATCGGGGAAGCCCGAG
GAGGCGTGCGTTTCTCTAATAGCGACATGCCGCAACATTCTTTGCTATCC
TTCGTCGAGGATGTTGACGATACACCTCGCGACGGCGGCGGCGGCGGCGG
TACCACTTCCTCGGGGGACGCGGCGAAGCAGAGTAGTTGGGGTCGTGCGC
CTGAAGCCAAATCATCTAGCCGGGGAGGGGGCGATTCGGGCAATTTGTTG
GAGTTTGACGATGATGACGGCGTTGCTCGTCGCTCAGGCATTTGCGATGG
TGATATCGAAGGAGACGACGCCTTTGTCGTTGCCGCTCAGAAAAAGAAGC
TCTCCTCATGGCTGTCGAGTCTGGAGATTCGACCATCGGACGCGTTGCGG
TACGCAGACAACCTGGTCGCAGACGGGTTCGATAGCGGAGAGGCCTTGAA
GGGTGTCCGCGAGGACGATCTGATCCAGTACGGCATGAAGAAGGGCCACG
CGAGACTCGTTGTTCGTACCCTTGCGAGAGGCTTCAGGCTTTAGGCCTTG
AAGGGTGTCCGCGAGGACGATCTGATCCAGTACGGCATGAAGAAGGGCCA
CGCGAGACTCGTTGTTCGTACCCTTGCGAGAGGCTTCAGGCTTTAG
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